Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005918

Physical Location & Seq

Genomic Coordinates Forward (+)

7939516 .. 7943818

Gene Structure 4303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG099300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1752 bp

ATGAAGAGCTATTTGGGTTATGATCAAGGACCAGCTTCTAGGACAAGGGGTACAAAGAAGACAAGACTCACACCTTATGATGAAGCTGCCTACTCTTCTCGTTCAGCCTCACCAAAATTTGGTCCAGTAAAAACCAGTCAAGAAGATAACCAAACTAGTAGTGATCACCAGGTATTGTGGGGTAAAGATGTTCAAAAACCTGCCTCAACTGATCAACAATCCTCTGCTCTATCTGCATTATGGTTGCCAGAAAAGCAGAAACTTGAGCTGGTTCTTGACATACTACAGAGGAGAGATACCAATGAAATATTTGCGGAGCCAGTTAACCCCAATGAGGTACAGGATTATTATGAAATTATCGAAGAGCCTATGGATTTTGGGACCATGAGGGCTAAACTACATGACGGAATGTATAAAAATCTTCAGCAATTTGAGCATGATGCATTTTTAGTAACAGAGAATGCAATGCATTTCAATTCCTCAGCTACCATTTATTTTAGACAGGCACGCTCCATACATGACTTAGCTAAGAAGGTATTTCACATTTTGAAAACCTATCCTGAGAAGTTGGAGTCAGAATTCTCAGAGGCTAGAAAAAGAACTGGTAGGAGGTCCCAAGTTGAAGTTGGAAAGTCACACTCATGTCCTAAAGTTGCTACAAATATGAAACACCTTGGCATGAAAATTGGTGATTCATCAAAAGCTATGCGATCCTCGCTTAGTGGTTCATTAAATACCAGGAAATGTCTAGCAAAAACTGGATGCTCTGGTACTGATACACAAGAGCAGAAACTTCTTTCTGGGACTAAAGATGATGGAAGATCTATGTCTTTCGAAGCAGATCGACGCTACACATATCGACCTTGGAGATCCTTCCTCAGTGAGAATGAGTCTGTTGGTTTGACGTTATCCACTGATCTAAAACAACTTGAGCATGTAAATCGCCAGGATATTGGTTACAGAGAAAGCTTGATGTCATTTGTCAAAGATTTAGGACCAACAGCTAAGATGATTGCTAGAAAGAAGATACTTGGATGTCTCCAACTGCAAGAGAGTGACTTTCCTTTGGCATCTACTAGTACCCAACGAGCACCTACCACTACTGCTTTTGCTGCAGCACCCTCTCATGGCAGGCATCCTACAATCATGAAGACCACTCGCACTACATTTCAGCTTCCATCCAGTGGTGACCAAAATAAGTCACATGCTGAATTTTATCCAAATCATAGGAATGAGATTCGTCAGTTGGATTTTTATCCCTTGAAACCTCACAATGGATCAGACTGCAGTAGCATAGCTTCTGGGTTCCAAAACACCAGCAACAAGTCAACAGCAATGATACTAAACCAAGGGAAGTTTCCTAATCAATTACAGTCTTTGGTATCACCTTCAGAGTCTCATTCTAATGTGTTGAGAAACCTGGAAATTGCAAGTCTTAGTAATGAGAGCTGCACATATAAATTGACTCCAGCGCCTTTGAGAGGAGATGATGATGAAACAAAAGCTAATCAAGGCCGAAGTCATGAATTTAGAAGCTTATCTCACACTAGCCAAATGCCAAAACCAGACCAAGTCAATCCAGCAGTGGCTCGACAGTTCGCATTCGATCTGCCATATTTGAGAGCTCAACTCGGTAAGATAAGTTCTTCTGGTCAGGATCGATTCTTGCATAATGGTTTAAGTGGTGAACTGAACTTTTCTGATAATATAGTTACCAGAGACACTCAATATGTACCTGCCATGAAGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0002576 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006810 GO:0006887 GO:0006996 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016192 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032940 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043966 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045055 GO:0046903 GO:0051179 GO:0051234 GO:0051276 GO:0070013 GO:0070775 GO:0070776 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain

Protein Analysis

583

Amino Acids

65.45

Weight (kDa)

9.12

Isoelectric Point (pI)

54.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bromodomain	PF00439	91 - 170	1.2e-20	Bromodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005918)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g09360 FvH4_7g26330
malus_domestica	MD01G1172400.v1.1 MD04G1178300.v1.1 MD07G1238700.v1.1
prunus_persica	Prupe.2G267500_v2.0.a1 Prupe.6G298300_v2.0.a1
pyrus_communis	pycom01g18390 pycom07g21470
rosa_chinensis	RchiOBHm_Chr1g0372791 RchiOBHm_Chr3g0459751
rosa_laevigata	RLG00000025060 RLG00000026872
rosa_multiflora	Rmu_co8360863.1_g000001 Rmu_sc0000240.1_g000036 Rmu_ssc0000024.1_g000009
rosa_roxburghii	Rroxscaffold_6G00420000
rosa_rugosa	Rorug01G0374300 Rorug03G0038100
rosa_samantha	Rh1AG383100 Rh1BG346800 Rh1CG360100 Rh1DG377700 Rh3AG096600 Rh3BG099300 Rh3CG101200 Rh3DG100600
rosa_wichuraiana	Rw1G033730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	208, 1744
AccB7I	CCANNNNNTGG	2 cut(s)	119, 1184
AciI	CCGC	1 cut(s)	314
AclWI	GGATC	4 cut(s)	705, 864, 1285, 1665
AcsI	RAATTY	4 cut(s)	116, 578, 1211, 1526
AcuI	CTGAAG	2 cut(s)	407, 1374
AfaI	GTAC	5 cut(s)	52, 339, 772, 1081, 1734
AfiI	CCNNNNNNNGG	6 cut(s)	119, 334, 1127, 1184, 1274, 1481
AgsI	TTSAA	5 cut(s)	194, 475, 550, 623, 1264
AhlI	ACTAGT	2 cut(s)	155, 1076
AjnI	CCWGG	4 cut(s)	168, 737, 945, 1419
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 1341, 1373
Alw21I	GWGCWC	2 cut(s)	1093, 1627
Alw26I	GTCTC	3 cut(s)	1043, 1401, 1713
AlwI	GGATC	4 cut(s)	705, 864, 1285, 1665
AoxI	GGCC	1 cut(s)	1513
ApeKI	GCWGC	4 cut(s)	86, 1112, 1115, 1449
ApoI	RAATTY	4 cut(s)	116, 578, 1211, 1526
AspLEI	GCGC	1 cut(s)	1474
AspS9I	GGNCC	5 cut(s)	29, 122, 381, 612, 995
AsuHPI	GGTGA	6 cut(s)	102, 158, 701, 1199, 1377, 1697
AsuII	TTCGAA	1 cut(s)	834
AvaII	GGWCC	5 cut(s)	29, 122, 381, 612, 995
BanII	GRGCYC	1 cut(s)	1627
BarI	GAAGNNNNNNTAC	2 cut(s)	1282, 1314
BbsI	GAAGAC	2 cut(s)	65, 1157
Bbv12I	GWGCWC	2 cut(s)	1093, 1627
BbvCI	CCTCAGC	1 cut(s)	481
BbvI	GCAGC	4 cut(s)	73, 1099, 1127, 1436
BccI	CCATC	2 cut(s)	809, 1186
BcgI	CGANNNNNNTGC	2 cut(s)	923, 957
BciT130I	CCWGG	4 cut(s)	170, 739, 947, 1421
BclI	TGATCA	3 cut(s)	22, 163, 211
BcoDI	GTCTC	3 cut(s)	1043, 1401, 1713
BcuI	ACTAGT	2 cut(s)	155, 1076
BfaI	CTAG	7 cut(s)	39, 156, 591, 749, 1017, 1077, 1548
BfmI	CTRYAG	3 cut(s)	284, 1113, 1285
BfoI	RGCGCY	1 cut(s)	1475
BfuAI	ACCTGC	2 cut(s)	208, 1744
BglII	AGATCT	1 cut(s)	821
BisI	GCNGC	4 cut(s)	87, 1113, 1116, 1450
BlsI	GCNGC	4 cut(s)	88, 1114, 1117, 1451
Bme1390I	CCNGG	4 cut(s)	170, 739, 947, 1421
Bme18I	GGWCC	5 cut(s)	29, 122, 381, 612, 995
BmgT120I	GGNCC	5 cut(s)	29, 122, 381, 612, 995
BmiI	GGNNCC	4 cut(s)	318, 382, 614, 1307
BmrFI	CCNGG	4 cut(s)	170, 739, 947, 1421
BmsI	GCATC	4 cut(s)	430, 752, 1079, 1144
BpiI	GAAGAC	2 cut(s)	65, 1157
BplI	GAGNNNNNCTC	2 cut(s)	1614, 1646
BpmI	CTGGAG	1 cut(s)	1452
Bpu10I	CCTNAGC	1 cut(s)	481
Bpu14I	TTCGAA	1 cut(s)	834
BpuEI	CTTGAG	2 cut(s)	284, 950
Bsa29I	ATCGAT	1 cut(s)	1660
BsaBI	GATNNNNATC	1 cut(s)	1254
BsaJI	CCNNGG	3 cut(s)	673, 863, 1348
Bsc4I	CCNNNNNNNGG	6 cut(s)	119, 334, 1127, 1184, 1274, 1481
Bse1I	ACTGG	6 cut(s)	125, 135, 320, 607, 763, 1182
Bse3DI	GCAATG	2 cut(s)	471, 1341
Bse8I	GATNNNNATC	1 cut(s)	1254
BseBI	CCWGG	4 cut(s)	170, 739, 947, 1421
BseCI	ATCGAT	1 cut(s)	1660
BseDI	CCNNGG	3 cut(s)	673, 863, 1348
BseGI	GGATG	4 cut(s)	767, 1040, 1135, 1178
BseJI	GATNNNNATC	1 cut(s)	1254
BseLI	CCNNNNNNNGG	6 cut(s)	119, 334, 1127, 1184, 1274, 1481
BseMI	GCAATG	2 cut(s)	471, 1341
BseMII	CTCAG	4 cut(s)	495, 552, 597, 892
BseNI	ACTGG	6 cut(s)	125, 135, 320, 607, 763, 1182
BseRI	GAGGAG	2 cut(s)	304, 1497
BseXI	GCAGC	4 cut(s)	73, 1099, 1127, 1436
BsgI	GTGCAG	1 cut(s)	1435
BshFI	GGCC	1 cut(s)	1515
BshVI	ATCGAT	1 cut(s)	1660
BsiHKAI	GWGCWC	2 cut(s)	1093, 1627
BslFI	GGGAC	3 cut(s)	394, 598, 817
BslI	CCNNNNNNNGG	6 cut(s)	119, 334, 1127, 1184, 1274, 1481
BsmAI	GTCTC	3 cut(s)	1043, 1401, 1713
BsmFI	GGGAC	3 cut(s)	394, 598, 817
BsmI	GAATGC	2 cut(s)	466, 1601
BsnI	GGCC	1 cut(s)	1515
Bsp119I	TTCGAA	1 cut(s)	834
Bsp1286I	GDGCHC	2 cut(s)	1093, 1627
BspACI	CCGC	1 cut(s)	314
BspANI	GGCC	1 cut(s)	1515
BspCNI	CTCAG	4 cut(s)	494, 553, 596, 891
BspDI	ATCGAT	1 cut(s)	1660
BspHI	TCATGA	2 cut(s)	1146, 1522
BspLI	GGNNCC	4 cut(s)	318, 382, 614, 1307
BspMAI	CTGCAG	2 cut(s)	1117, 1289
BspMI	ACCTGC	2 cut(s)	208, 1744
BspPI	GGATC	4 cut(s)	705, 864, 1285, 1665
BspQI	GCTCTTC	1 cut(s)	357
BspT104I	TTCGAA	1 cut(s)	834
BsrDI	GCAATG	2 cut(s)	471, 1341
BsrI	ACTGG	6 cut(s)	125, 135, 320, 607, 763, 1182
BssECI	CCNNGG	3 cut(s)	673, 863, 1348
BssT1I	CCWWGG	3 cut(s)	673, 863, 1348
Bst2UI	CCWGG	4 cut(s)	170, 739, 947, 1421
Bst4CI	ACNGT	2 cut(s)	1374, 1596
Bst6I	CTCTTC	2 cut(s)	100, 357
BstBI	TTCGAA	1 cut(s)	834
BstC8I	GCNNGC	2 cut(s)	508, 1133
BstDEI	CTNAG	9 cut(s)	481, 523, 528, 561, 583, 719, 878, 1005, 1436
BstEII	GGTNACC	1 cut(s)	1187
BstENI	CCTNNNNNAGG	1 cut(s)	1479
BstF5I	GGATG	4 cut(s)	767, 1040, 1135, 1178
BstH2I	RGCGCY	1 cut(s)	1475
BstHHI	GCGC	1 cut(s)	1474
BstMAI	GTCTC	3 cut(s)	1043, 1401, 1713
BstMWI	GCNNNNNNNGC	5 cut(s)	233, 253, 433, 715, 1112
BstNI	CCWGG	4 cut(s)	170, 739, 947, 1421
BstNSI	RCATGY	2 cut(s)	938, 1208
BstPI	GGTNACC	1 cut(s)	1187
BstSCI	CCNGG	4 cut(s)	168, 737, 945, 1419
BstSFI	CTRYAG	3 cut(s)	284, 1113, 1285
BstV1I	GCAGC	4 cut(s)	73, 1099, 1127, 1436
BstV2I	GAAGAC	2 cut(s)	65, 1157
BstX2I	RGATCY	2 cut(s)	821, 869
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	2 cut(s)	821, 869
Bsu15I	ATCGAT	1 cut(s)	1660
BsuRI	GGCC	1 cut(s)	1515
BsuTUI	ATCGAT	1 cut(s)	1660
BtsCI	GGATG	4 cut(s)	767, 1040, 1135, 1178
BtsI	GCAGTG	1 cut(s)	1590
BtsIMutI	CAGTG	4 cut(s)	886, 912, 1189, 1590
BveI	ACCTGC	2 cut(s)	208, 1744
Cac8I	GCNNGC	2 cut(s)	508, 1133
CciI	TCATGA	2 cut(s)	1146, 1522
CfoI	GCGC	1 cut(s)	1474
Cfr13I	GGNCC	5 cut(s)	29, 122, 381, 612, 995
ClaI	ATCGAT	1 cut(s)	1660
CseI	GACGC	1 cut(s)	855
CsiI	ACCWGGT	1 cut(s)	168
Csp6I	GTAC	5 cut(s)	51, 338, 771, 1080, 1733
CviQI	GTAC	5 cut(s)	51, 338, 771, 1080, 1733
DdeI	CTNAG	9 cut(s)	481, 523, 528, 561, 583, 719, 878, 1005, 1436
Eam1104I	CTCTTC	2 cut(s)	100, 357
EarI	CTCTTC	2 cut(s)	100, 357
Ecl136II	GAGCTC	1 cut(s)	1625
Eco130I	CCWWGG	3 cut(s)	673, 863, 1348
Eco24I	GRGCYC	1 cut(s)	1627
Eco47I	GGWCC	5 cut(s)	29, 122, 381, 612, 995
Eco53kI	GAGCTC	1 cut(s)	1625
Eco57I	CTGAAG	2 cut(s)	407, 1374
Eco91I	GGTNACC	1 cut(s)	1187
EcoICRI	GAGCTC	1 cut(s)	1625
EcoNI	CCTNNNNNAGG	1 cut(s)	1479
EcoO109I	RGGNCCY	1 cut(s)	612
EcoO65I	GGTNACC	1 cut(s)	1187
EcoRI	GAATTC	1 cut(s)	578
EcoRII	CCWGG	4 cut(s)	168, 737, 945, 1419
EcoT14I	CCWWGG	3 cut(s)	673, 863, 1348
EcoT22I	ATGCAT	2 cut(s)	445, 471
EcoT38I	GRGCYC	1 cut(s)	1627
ErhI	CCWWGG	3 cut(s)	673, 863, 1348
FaqI	GGGAC	3 cut(s)	394, 598, 817
FbaI	TGATCA	3 cut(s)	22, 163, 211
Fnu4HI	GCNGC	4 cut(s)	87, 1113, 1116, 1450
FokI	GGATG	4 cut(s)	774, 1047, 1122, 1165
FriOI	GRGCYC	1 cut(s)	1627
Fsp4HI	GCNGC	4 cut(s)	87, 1113, 1116, 1450
FspBI	CTAG	7 cut(s)	39, 156, 591, 749, 1017, 1077, 1548
GlaI	GCGC	1 cut(s)	1473
GluI	GCNGC	4 cut(s)	87, 1113, 1116, 1450
GsuI	CTGGAG	1 cut(s)	1452
HaeII	RGCGCY	1 cut(s)	1475
HaeIII	GGCC	1 cut(s)	1515
HgaI	GACGC	1 cut(s)	855
HhaI	GCGC	1 cut(s)	1474
Hin6I	GCGC	1 cut(s)	1472
HinP1I	GCGC	1 cut(s)	1472
HincII	GTYRAC	2 cut(s)	325, 1329
HindII	GTYRAC	2 cut(s)	325, 1329
HindIII	AAGCTT	2 cut(s)	967, 1534
HinfI	GANTC	8 cut(s)	66, 572, 692, 890, 1237, 1394, 1465, 1662
HpaI	GTTAAC	1 cut(s)	325
HphI	GGTGA	6 cut(s)	102, 158, 701, 1199, 1377, 1697
Hpy166II	GTNNAC	3 cut(s)	325, 1329, 1688
Hpy188I	TCNGA	5 cut(s)	577, 586, 1282, 1393, 1702
Hpy188III	TCNNGA	6 cut(s)	140, 275, 560, 1147, 1523, 1655
Hpy8I	GTNNAC	3 cut(s)	325, 1329, 1688
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	3 cut(s)	526, 883, 1398
HpyCH4III	ACNGT	2 cut(s)	1374, 1596
HpyCH4IV	ACGT	1 cut(s)	905
HpyF10VI	GCNNNNNNNGC	5 cut(s)	233, 253, 433, 715, 1112
HpyF3I	CTNAG	9 cut(s)	481, 523, 528, 561, 583, 719, 878, 1005, 1436
HpySE526I	ACGT	1 cut(s)	905
HspAI	GCGC	1 cut(s)	1472
Ksp22I	TGATCA	3 cut(s)	22, 163, 211
KspAI	GTTAAC	1 cut(s)	325
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	2 cut(s)	316, 515
Lsp1109I	GCAGC	4 cut(s)	73, 1099, 1127, 1436
LweI	GCATC	4 cut(s)	430, 752, 1079, 1144
MabI	ACCWGGT	1 cut(s)	168
MaeI	CTAG	7 cut(s)	39, 156, 591, 749, 1017, 1077, 1548
MaeII	ACGT	1 cut(s)	905
MaeIII	GTNAC	7 cut(s)	451, 633, 956, 1055, 1187, 1200, 1711
MflI	RGATCY	2 cut(s)	821, 869
MhlI	GDGCHC	2 cut(s)	1093, 1627
MlyI	GAGTC	5 cut(s)	60, 581, 899, 1403, 1459
MmeI	TCCRAC	4 cut(s)	549, 607, 1066, 1227
Mph1103I	ATGCAT	2 cut(s)	445, 471
MseI	TTAA	3 cut(s)	324, 731, 1679
MslI	CAYNNNNRTG	3 cut(s)	640, 1230, 1404
MspR9I	CCNGG	4 cut(s)	170, 739, 947, 1421
Mva1269I	GAATGC	2 cut(s)	466, 1601
MvaI	CCWGG	4 cut(s)	170, 739, 947, 1421
MwoI	GCNNNNNNNGC	5 cut(s)	233, 253, 433, 715, 1112
NlaIV	GGNNCC	4 cut(s)	318, 382, 614, 1307
NmuCI	GTSAC	4 cut(s)	633, 1055, 1187, 1200
NsiI	ATGCAT	2 cut(s)	445, 471
NspI	RCATGY	2 cut(s)	938, 1208
NspV	TTCGAA	1 cut(s)	834
PagI	TCATGA	2 cut(s)	1146, 1522
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	2 cut(s)	466, 1601
PfeI	GAWTC	3 cut(s)	692, 1237, 1662
PflFI	GACNNNGTC	1 cut(s)	1571
PflMI	CCANNNNNTGG	2 cut(s)	119, 1184
PkrI	GCNGC	4 cut(s)	88, 1114, 1117, 1451
PleI	GAGTC	5 cut(s)	60, 580, 898, 1402, 1459
PpsI	GAGTC	5 cut(s)	60, 580, 898, 1402, 1459
PpuMI	RGGWCCY	1 cut(s)	612
Psp124BI	GAGCTC	1 cut(s)	1627
Psp5II	RGGWCCY	1 cut(s)	612
Psp6I	CCWGG	4 cut(s)	168, 737, 945, 1419
PspEI	GGTNACC	1 cut(s)	1187
PspGI	CCWGG	4 cut(s)	168, 737, 945, 1419
PspN4I	GGNNCC	4 cut(s)	318, 382, 614, 1307
PspPI	GGNCC	5 cut(s)	29, 122, 381, 612, 995
PspPPI	RGGWCCY	1 cut(s)	612
PsrI	GAACNNNNNNTAC	2 cut(s)	1627, 1659
PstI	CTGCAG	2 cut(s)	1117, 1289
PsuI	RGATCY	2 cut(s)	821, 869
PsyI	GACNNNGTC	1 cut(s)	1571
RsaI	GTAC	5 cut(s)	52, 339, 772, 1081, 1734
RsaNI	GTAC	5 cut(s)	51, 338, 771, 1080, 1733
RseI	CAYNNNNRTG	3 cut(s)	640, 1230, 1404
SacI	GAGCTC	1 cut(s)	1627
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	3 cut(s)	324, 731, 1679
SatI	GCNGC	4 cut(s)	87, 1113, 1116, 1450
Sau96I	GGNCC	5 cut(s)	29, 122, 381, 612, 995
SchI	GAGTC	5 cut(s)	60, 581, 899, 1403, 1459
ScrFI	CCNGG	4 cut(s)	170, 739, 947, 1421
SduI	GDGCHC	2 cut(s)	1093, 1627
SexAI	ACCWGGT	1 cut(s)	168
SfaNI	GCATC	4 cut(s)	430, 752, 1079, 1144
SfcI	CTRYAG	3 cut(s)	284, 1113, 1285
SfuI	TTCGAA	1 cut(s)	834
SinI	GGWCC	5 cut(s)	29, 122, 381, 612, 995
SmiMI	CAYNNNNRTG	3 cut(s)	640, 1230, 1404
SmlI	CTYRAG	2 cut(s)	263, 929
SmoI	CTYRAG	2 cut(s)	263, 929
SpeI	ACTAGT	2 cut(s)	155, 1076
SsiI	CCGC	1 cut(s)	314
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	7 cut(s)	39, 156, 591, 749, 1017, 1077, 1548
SstI	GAGCTC	1 cut(s)	1627
StyD4I	CCNGG	4 cut(s)	168, 737, 945, 1419
StyI	CCWWGG	3 cut(s)	673, 863, 1348
TaaI	ACNGT	2 cut(s)	1374, 1596
TaiI	ACGT	1 cut(s)	908
TaqI	TCGA	7 cut(s)	360, 834, 844, 859, 1591, 1605, 1660
TfiI	GAWTC	3 cut(s)	692, 1237, 1662
Tru1I	TTAA	3 cut(s)	324, 731, 1679
Tru9I	TTAA	3 cut(s)	324, 731, 1679
TscAI	CASTG	4 cut(s)	886, 919, 1189, 1590
TseFI	GTSAC	4 cut(s)	633, 1055, 1187, 1200
TseI	GCWGC	4 cut(s)	86, 1112, 1115, 1449
Tsp45I	GTSAC	4 cut(s)	633, 1055, 1187, 1200
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	4 cut(s)	886, 919, 1189, 1590
Tth111I	GACNNNGTC	1 cut(s)	1571
Van91I	CCANNNNNTGG	2 cut(s)	119, 1184
VpaK11BI	GGWCC	5 cut(s)	29, 122, 381, 612, 995
XagI	CCTNNNNNAGG	1 cut(s)	1479
XapI	RAATTY	4 cut(s)	116, 578, 1211, 1526
XceI	RCATGY	2 cut(s)	938, 1208
XcmI	CCANNNNNNNNNTGG	1 cut(s)	623
XspI	CTAG	7 cut(s)	39, 156, 591, 749, 1017, 1077, 1548
Zsp2I	ATGCAT	2 cut(s)	445, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.