Rw1G033730

platelet degranulation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0005918
Physical Location & Seq
Reverse (-)
61694298 .. 61697236
2939 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G033730.1

Sequence Viewer

Length: 933 bp
ATGATGTGGAATGGGGACCGTAGACAGAGTTTACGTATATTTGCACTTGAAACACAGAAGAAGCAGCAAAAAGAGAACCAGAATCTGAATCAGGGAAAAAAGGCTGGTAGTACTAGTACCAAAGATCATCAGACAAATGCTGCTGTTATGTCATCTGGAAATCCTTTACCAGAAAGAAGCAAGCTTCAACTGTTGCTTGAACCAATGGATTTTGGCACGATTACAGCAAAACTCAATGGAGGAAGCTACAAAGCACCGCAAGAATTTGAGCATGATGCAACACTGGTATGGAGCAATGCTATGCTTTTCAACGATTCAAGTACCCTTTATTATAAAGAGGCTCGTTTGATAAGAAATCTAGCGACGAAGTTGTTTAATTCTTTGAAAACTGACCCTGAGAGCTTTGTGGAAATATCAAAATCTGTCTATCTCAGCCCACAAGAACTAGTGCAGAATAAGCAGAATAGTACTGGATACACAGAAAGCCTGCTGCAGTTTGTTAAAGATCTAGGGCCTACTGCTAATACATTTGCATGTTGGAAGTTACAAAGGACAATGGGAATTCTGACTCTACCAGATCCTTATTTGGAAGTTCCAACTTATCTGCTCAGGGGTAAGAATGTCCAAGTAGCTGACATATCTTCTTTAGAGCAGAAGATACCGGCTGCAAAAGGTTATGGTTCTTCATCTTCTTCGTCAGCAGCATGGCTTTTCCAATTTATGTCTGGAGCAACTCAGAGCCCAGCCTCTCACACAAGTTACTCTAGCAATGTGGAGGAGGCAGGCCAAGACTGGAAACGGTTCAGGCCAACAGAGGCACCACCACAGCCTGTTTCTAGCCGGCTGTTCCAGCCGCAATCAACATCGGCTGGGCCCTCACAGTGGGGAGACATTGGTGCATCAACCTCTAACGCAAAGCCTAGAAGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bromodomain

Protein Analysis

310

Amino Acids

34.36

Weight (kDa)

9.33

Isoelectric Point (pI)

54.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bromodomain PF00439 67 - 115 2.4e-11 Bromodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 817
AccI GTMKAC 1 cut(s) 22
AciI CCGC 2 cut(s) 257, 854
AclWI GGATC 1 cut(s) 572
AcsI RAATTY 2 cut(s) 263, 561
AfaI GTAC 4 cut(s) 112, 118, 322, 469
AfiI CCNNNNNNNGG 1 cut(s) 882
AgsI TTSAA 6 cut(s) 50, 188, 200, 310, 318, 385
AhlI ACTAGT 2 cut(s) 113, 445
AluBI AGCT 4 cut(s) 184, 246, 402, 632
AluI AGCT 4 cut(s) 184, 246, 402, 632
Alw26I GTCTC 1 cut(s) 882
AlwI GGATC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 85
AoxI GGCC 4 cut(s) 512, 784, 806, 872
ApaI GGGCCC 1 cut(s) 876
ApeKI GCWGC 5 cut(s) 64, 140, 490, 665, 701
ApoI RAATTY 2 cut(s) 263, 561
Asp700I GAANNNNTTC 1 cut(s) 800
AspS9I GGNCC 4 cut(s) 16, 512, 872, 873
AvaII GGWCC 1 cut(s) 16
BaeGI GKGCMC 1 cut(s) 876
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 2 cut(s) 743, 876
BbvI GCAGC 5 cut(s) 76, 127, 477, 652, 713
BciVI GTATCC 1 cut(s) 467
BcoDI GTCTC 1 cut(s) 882
BcuI ACTAGT 2 cut(s) 113, 445
BfaI CTAG 7 cut(s) 114, 359, 446, 509, 765, 837, 921
BfmI CTRYAG 1 cut(s) 491
BfuI GTATCC 1 cut(s) 467
BglII AGATCT 1 cut(s) 505
BisI GCNGC 6 cut(s) 65, 141, 491, 666, 702, 854
BlsI GCNGC 6 cut(s) 66, 142, 492, 667, 703, 855
BmcAI AGTACT 2 cut(s) 112, 469
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 4 cut(s) 16, 512, 872, 873
BmiI GGNNCC 3 cut(s) 17, 819, 874
BmsI GCATC 2 cut(s) 265, 908
BpmI CTGGAG 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 608
BsaAI YACGTR 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 882
Bse118I RCCGGY 2 cut(s) 661, 840
Bse1I ACTGG 3 cut(s) 288, 475, 797
Bse3DI GCAATG 2 cut(s) 301, 775
BseLI CCNNNNNNNGG 1 cut(s) 882
BseMI GCAATG 2 cut(s) 301, 775
BseMII CTCAG 4 cut(s) 387, 445, 622, 749
BseNI ACTGG 3 cut(s) 288, 475, 797
BseRI GAGGAG 1 cut(s) 791
BseSI GKGCMC 1 cut(s) 876
BseXI GCAGC 5 cut(s) 76, 127, 477, 652, 713
BseYI CCCAGC 2 cut(s) 742, 869
BsgI GTGCAG 1 cut(s) 470
BshFI GGCC 4 cut(s) 514, 786, 808, 874
BshNI GGYRCC 1 cut(s) 817
BsiSI CCGG 2 cut(s) 662, 841
BslFI GGGAC 1 cut(s) 29
BslI CCNNNNNNNGG 1 cut(s) 882
BsmAI GTCTC 1 cut(s) 882
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 4 cut(s) 514, 786, 808, 874
Bsp120I GGGCCC 1 cut(s) 872
Bsp1286I GDGCHC 2 cut(s) 743, 876
Bsp143I GATC 3 cut(s) 124, 505, 577
BspACI CCGC 2 cut(s) 257, 854
BspANI GGCC 4 cut(s) 514, 786, 808, 874
BspCNI CTCAG 4 cut(s) 388, 444, 621, 748
BspLI GGNNCC 3 cut(s) 17, 819, 874
BspMAI CTGCAG 1 cut(s) 495
BspPI GGATC 1 cut(s) 572
BspT107I GGYRCC 1 cut(s) 817
BsrDI GCAATG 2 cut(s) 301, 775
BsrFI RCCGGY 2 cut(s) 661, 840
BsrI ACTGG 3 cut(s) 288, 475, 797
BssAI RCCGGY 2 cut(s) 661, 840
BssMI GATC 3 cut(s) 124, 505, 577
Bst4CI ACNGT 4 cut(s) 20, 192, 801, 882
BstBAI YACGTR 1 cut(s) 35
BstC8I GCNNGC 4 cut(s) 182, 488, 784, 842
BstDEI CTNAG 4 cut(s) 396, 431, 608, 735
BstKTI GATC 3 cut(s) 127, 508, 580
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 3 cut(s) 124, 505, 577
BstMWI GCNNNNNNNGC 2 cut(s) 457, 850
BstNSI RCATGY 1 cut(s) 537
BstSFI CTRYAG 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 876
BstSNI TACGTA 1 cut(s) 35
BstV1I GCAGC 5 cut(s) 76, 127, 477, 652, 713
BstX2I RGATCY 2 cut(s) 505, 577
BstYI RGATCY 2 cut(s) 505, 577
BsuI GTATCC 1 cut(s) 467
BsuRI GGCC 4 cut(s) 514, 786, 808, 874
BtsIMutI CAGTG 2 cut(s) 281, 887
Cac8I GCNNGC 4 cut(s) 182, 488, 784, 842
CaiI CAGNNNCTG 1 cut(s) 85
Cfr10I RCCGGY 2 cut(s) 661, 840
Cfr13I GGNCC 4 cut(s) 16, 512, 872, 873
Csp6I GTAC 4 cut(s) 111, 117, 321, 468
CviAII CATG 3 cut(s) 272, 534, 705
CviQI GTAC 4 cut(s) 111, 117, 321, 468
DdeI CTNAG 4 cut(s) 396, 431, 608, 735
DpnI GATC 3 cut(s) 126, 507, 579
DpnII GATC 3 cut(s) 124, 505, 577
Eco105I TACGTA 1 cut(s) 35
Eco24I GRGCYC 2 cut(s) 743, 876
Eco47I GGWCC 1 cut(s) 16
EcoO109I RGGNCCY 2 cut(s) 512, 873
EcoRI GAATTC 1 cut(s) 561
EcoT38I GRGCYC 2 cut(s) 743, 876
FaeI CATG 3 cut(s) 275, 537, 708
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 271, 533, 704
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 6 cut(s) 65, 141, 491, 666, 702, 854
FriOI GRGCYC 2 cut(s) 743, 876
Fsp4HI GCNGC 6 cut(s) 65, 141, 491, 666, 702, 854
FspBI CTAG 7 cut(s) 114, 359, 446, 509, 765, 837, 921
GluI GCNGC 6 cut(s) 65, 141, 491, 666, 702, 854
GsaI CCCAGC 2 cut(s) 746, 873
GsuI CTGGAG 1 cut(s) 747
HaeIII GGCC 4 cut(s) 514, 786, 808, 874
HapII CCGG 2 cut(s) 662, 841
Hin1II CATG 3 cut(s) 275, 537, 708
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 4 cut(s) 82, 88, 314, 568
HpaII CCGG 2 cut(s) 662, 841
Hpy166II GTNNAC 2 cut(s) 23, 32
Hpy188I TCNGA 4 cut(s) 87, 132, 567, 738
Hpy188III TCNNGA 2 cut(s) 156, 726
Hpy8I GTNNAC 2 cut(s) 23, 32
Hpy99I CGWCG 1 cut(s) 367
HpyAV CCTTC 1 cut(s) 918
HpyCH4III ACNGT 4 cut(s) 20, 192, 801, 882
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 7 cut(s) 44, 278, 451, 493, 533, 668, 899
HpyF10VI GCNNNNNNNGC 2 cut(s) 457, 850
HpyF3I CTNAG 4 cut(s) 396, 431, 608, 735
HpySE526I ACGT 1 cut(s) 34
Hsp92II CATG 3 cut(s) 275, 537, 708
KroI GCCGGC 1 cut(s) 840
KroNI GCCGGC 1 cut(s) 842
Kzo9I GATC 3 cut(s) 124, 505, 577
LmnI GCTCC 2 cut(s) 291, 728
Lsp1109I GCAGC 5 cut(s) 76, 127, 477, 652, 713
LweI GCATC 2 cut(s) 265, 908
MaeI CTAG 7 cut(s) 114, 359, 446, 509, 765, 837, 921
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 2 cut(s) 543, 758
MalI GATC 3 cut(s) 126, 507, 579
MboI GATC 3 cut(s) 124, 505, 577
MboII GAAGA 6 cut(s) 70, 633, 667, 675, 681, 684
MflI RGATCY 2 cut(s) 505, 577
MhlI GDGCHC 2 cut(s) 743, 876
MluCI AATT 4 cut(s) 263, 376, 561, 716
MlyI GAGTC 1 cut(s) 562
MmeI TCCRAC 2 cut(s) 518, 620
MnlI CCTC 8 cut(s) 233, 331, 757, 769, 772, 808, 886, 916
MroNI GCCGGC 1 cut(s) 840
MroXI GAANNNNTTC 1 cut(s) 800
MseI TTAA 2 cut(s) 375, 501
MslI CAYNNNNRTG 2 cut(s) 286, 532
MspI CCGG 2 cut(s) 662, 841
MwoI GCNNNNNNNGC 2 cut(s) 457, 850
NaeI GCCGGC 1 cut(s) 842
NdeII GATC 3 cut(s) 124, 505, 577
NgoMIV GCCGGC 1 cut(s) 840
NlaIII CATG 3 cut(s) 275, 537, 708
NlaIV GGNNCC 3 cut(s) 17, 819, 874
NspI RCATGY 1 cut(s) 537
PdiI GCCGGC 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 3 cut(s) 82, 88, 314
PkrI GCNGC 6 cut(s) 66, 142, 492, 667, 703, 855
PleI GAGTC 1 cut(s) 562
PpsI GAGTC 1 cut(s) 562
Ppu21I YACGTR 1 cut(s) 35
PsiI TTATAA 1 cut(s) 333
PspFI CCCAGC 2 cut(s) 742, 869
PspN4I GGNNCC 3 cut(s) 17, 819, 874
PspOMI GGGCCC 1 cut(s) 872
PspPI GGNCC 4 cut(s) 16, 512, 872, 873
PstI CTGCAG 1 cut(s) 495
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 505, 577
RsaI GTAC 4 cut(s) 112, 118, 322, 469
RsaNI GTAC 4 cut(s) 111, 117, 321, 468
RseI CAYNNNNRTG 2 cut(s) 286, 532
SaqAI TTAA 2 cut(s) 375, 501
SatI GCNGC 6 cut(s) 65, 141, 491, 666, 702, 854
Sau3AI GATC 3 cut(s) 124, 505, 577
Sau96I GGNCC 4 cut(s) 16, 512, 872, 873
ScaI AGTACT 2 cut(s) 112, 469
SchI GAGTC 1 cut(s) 562
SduI GDGCHC 2 cut(s) 743, 876
SetI ASST 8 cut(s) 37, 186, 248, 404, 634, 676, 908, 929
SfaNI GCATC 2 cut(s) 265, 908
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 286, 532
SnaBI TACGTA 1 cut(s) 35
SpeI ACTAGT 2 cut(s) 113, 445
Sse9I AATT 4 cut(s) 263, 376, 561, 716
SsiI CCGC 2 cut(s) 257, 854
SspMI CTAG 7 cut(s) 114, 359, 446, 509, 765, 837, 921
TaaI ACNGT 4 cut(s) 20, 192, 801, 882
TaiI ACGT 1 cut(s) 37
TasI AATT 4 cut(s) 263, 376, 561, 716
TatI WGTACW 2 cut(s) 110, 467
TauI GCSGC 1 cut(s) 856
TfiI GAWTC 3 cut(s) 82, 88, 314
Tru1I TTAA 2 cut(s) 375, 501
Tru9I TTAA 2 cut(s) 375, 501
TscAI CASTG 2 cut(s) 288, 887
TseI GCWGC 5 cut(s) 64, 140, 490, 665, 701
TspDTI ATGAA 1 cut(s) 675
TspRI CASTG 2 cut(s) 288, 887
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 2 cut(s) 263, 561
XceI RCATGY 1 cut(s) 537
XcmI CCANNNNNNNNNTGG 1 cut(s) 722
XmiI GTMKAC 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 7 cut(s) 114, 359, 446, 509, 765, 837, 921
ZrmI AGTACT 2 cut(s) 112, 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.