Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

20393636 .. 20398231

Gene Structure 4596 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27230.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2271 bp

ATGGAGGCCGTCCCACCAAACCCTATCGAAACCCTAGATCACCAACCCGCCTCCAACAACCACAACCCTCCGGAGTCTATAGTCTCCGATTACAAAGACCCGTCCCCGCCGCCATCGCAAACCCTAGCCTTCCACGCCGCCGCCGAGAACGGCACTCCGGCCGACGCCAGCAAGGCGGTCGCTCTGTTGATCTCGGAGAACGGACTGACCAACACGCAGAGCGGCACGACCGACAGGGAGGTCTCCCTCTCCGGCGGAGAGGAGGAGACCACGAGCAGGCGCCGCCGCCGCAGCCGGTGGGACCCGCAGCCTGAGTCGGAGAGCCAGGGGGATGAGTCCGGCAGCGGGAAGAGGAAGCGGAAGTCGCGGTGGGCGGCGGAGGAGCCCAAGCCGGTGGTTCAGTTGCCGGATTTTATGGGAGGTATAGAATTCGATCCCGAGATTCAAGCTTTGAATAGTCGGCTCCTTGAGATTAGTCGGATGCTCTCTTCGGGTTTGCCTCTGGATGACAGACCCGAAGGAGCTAGGTCTCCGTCGCCGGAGCCTGTGTATGATAACATGGGGATTAGAATTAACACCAGAGAGTTTCGAGCGCGTGAGAGGTTGAATAGAGAGAGGCAGGAAATTATTGCTCAGATTCTTAAGCGGAACCCTAATTACAAGCCTCCGGCGGATTACAGGCCGCCGAAGCTTCACAAGAAGCTTTACATTCCAATGAAAGAGTACCCCGGTTACAATTTTATCGGGCTTATAATCGGCCCGAGGGGGAATACTCAGAAGAGGATGGAGAAAGAGACCGGGGCGAAGATTGTCATCAGGGGGAAGGGGTCTGTGAAGGAGGGGAGGTTGCAACAGAAGAGGGATTTGAAACCTGATCCGTCGGAGAATGAGGACTTGCATGTTCTGGTTGAGGCTGATACGCAAGACGCTCTGGATGCTGCGGCTGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTCGCAGCCTTGAATGGGACTATTAGGGATGAGGAGTATTGTAGGTTATGTGGTGAGCCTGGGCATCGTCAGTATGCGTGTCCATCACGAACTTCGACCTTTAAGAGTGATGTGCTTTGCAAGATATGTGGTGATGGTGGGCATCCTACTATTGATTGTCCGATGAAGGGGACATCTGGGAAGAAGATGGATGATGAGTATCAGAATTTTTTAGCTGAGTTAGGTGGGACAGTTCCTGAGTCAGCAACTAAGCAGACGGCTACTCTGGCTCTTGGTCCAGGGACTTCAGCGAGCAATCCTCCGTGGTCTAATAGTGGGGGGAGTGCTACCGGTGCATCACATCCAGGGTTGGGTTTTTCTGGGATTAAGCCTACTACAAAGGAACATGACGACACAAATCTGTACATTGGGTACCTGCCACCTACACTTGAGGATGATGGTTTGATCGGTATGTTTTCACAGTTTGGTGACATTGTGATGGCCAAAGTAATCAAGGACAGGGTTACTGGATTGAGTAAAGGTTATGGATTCGTGAAGTATGCTGATGTTCAGATGGCTAATAATGCTATTGCAAGCATGAATGGCTATAAGCTTGAAGGGCGATCAATTGCTGTCAGAGTTGCTGGCAAGCCTCCCCAGACTGTTGTGCCTCCTGGGCCGCCGGCTTCGGTGATGCCATCATACCCTGTTTCCAGTCAGCCTGTTGGTGCCTATCCCTCCCAGCATTTTAACCCAGGTGGTCCTCCTGCTCCACCTATGTATTCGGGTAACCCAGTTCCATGGGGAACCCCTGCTCCACCTCCTTATGCTCCTTATGCTCCTCCCCCTCCTCCTGGTTCGAACATGTACTACCCTCCTATGAGTCAGCCTATGGCCGGTTATGGTGCACGATACCCTCCTCCCCCTGGTGCACCACCTCCACCCTCCAGTGAAGCACAGCAGAGTTACCCTCCTCCAGGAGTTCAATCTGAAAATTCTAGCCAACCTATACCAACTAATATGTATGGGAGCTCTCTGCCAGCAATGCCACCAAATGGCCAACATACTTATCCTGCATCTTCATATGGTTACTCATCTTACTACAATGCTGTTCCACCTCCTCCTCCACCTCCCTCAACTGCAGACCAATCTCAGAGCATTGGTAATGTGCCATGGGCAACAAGTACTCCCCCTCCCCCTCCTGCGCCTTCTACAGAGAAAGCAACCTATGGTGCAGATGCAGAGTATGAGAAGTTCATGGCAGAGACTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

757

Amino Acids

81.63

Weight (kDa)

5.95

Isoelectric Point (pI)

60.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	120 - 227	5.8e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	241 - 323	7.4e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	473 - 542	3.6e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	752
AasI	GACNNNNNNGTC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	1440
Acc65I	GGTACC	1 cut(s)	1428
AccB1I	GGYRCC	3 cut(s)	279, 1428, 1724
AccB7I	CCANNNNNTGG	1 cut(s)	2051
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	2 cut(s)	367, 595
AccIII	TCCGGA	1 cut(s)	70
AclWI	GGATC	2 cut(s)	428, 869
AcoI	YGGCCR	4 cut(s)	159, 1497, 1890, 2053
AcsI	RAATTY	3 cut(s)	428, 1222, 1990
AcuI	CTGAAG	1 cut(s)	1287
AcyI	GRCGYC	2 cut(s)	165, 280
AfaI	GTAC	5 cut(s)	725, 1421, 1430, 1865, 2182
AflII	CTTAAG	1 cut(s)	641
AflIII	ACRYGT	1 cut(s)	1860
AgeI	ACCGGT	1 cut(s)	1346
AgsI	TTSAA	8 cut(s)	446, 454, 607, 868, 988, 1030, 1613, 1982
AjnI	CCWGG	9 cut(s)	324, 1075, 1294, 1360, 1669, 1750, 1849, 1921, 1972
AloI	GAACNNNNNNTCC	2 cut(s)	1795, 1827
AluBI	AGCT	9 cut(s)	449, 524, 691, 703, 961, 1009, 1232, 1609, 2028
AluI	AGCT	9 cut(s)	449, 524, 691, 703, 961, 1009, 1232, 1609, 2028
Alw21I	GWGCWC	3 cut(s)	1906, 1930, 2030
Alw26I	GTCTC	6 cut(s)	88, 247, 260, 534, 788, 2255
Alw44I	GTGCAC	2 cut(s)	1902, 1926
AlwI	GGATC	2 cut(s)	428, 869
AlwNI	CAGNNNCTG	1 cut(s)	1253
Ama87I	CYCGRG	2 cut(s)	437, 760
Aor13HI	TCCGGA	1 cut(s)	70
AoxI	GGCC	8 cut(s)	6, 159, 680, 757, 1497, 1673, 1890, 2053
ApaLI	GTGCAC	2 cut(s)	1902, 1926
ApeKI	GCWGC	6 cut(s)	291, 307, 342, 938, 967, 1022
ApoI	RAATTY	3 cut(s)	428, 1222, 1990
AsiGI	ACCGGT	1 cut(s)	1346
Asp718I	GGTACC	1 cut(s)	1428
AspLEI	GCGC	3 cut(s)	282, 595, 2203
AspS9I	GGNCC	5 cut(s)	301, 758, 1292, 1673, 1757
AsuC2I	CCSGG	2 cut(s)	729, 799
AsuHPI	GGTGA	5 cut(s)	32, 1082, 1160, 1496, 1699
AsuII	TTCGAA	1 cut(s)	1856
AvaI	CYCGRG	2 cut(s)	437, 760
AvaII	GGWCC	3 cut(s)	301, 1292, 1757
BaeGI	GKGCMC	2 cut(s)	1906, 1930
BalI	TGGCCA	2 cut(s)	1499, 2055
BanI	GGYRCC	3 cut(s)	279, 1428, 1724
BanII	GRGCYC	2 cut(s)	387, 2030
BauI	CACGAG	1 cut(s)	271
Bbv12I	GWGCWC	3 cut(s)	1906, 1930, 2030
BbvI	GCAGC	6 cut(s)	303, 319, 354, 925, 979, 1034
BceAI	ACGGC	2 cut(s)	166, 1290
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	9 cut(s)	326, 1077, 1296, 1362, 1671, 1752, 1851, 1923, 1974
BcnI	CCSGG	2 cut(s)	729, 799
BcoDI	GTCTC	6 cut(s)	88, 247, 260, 534, 788, 2255
BfaI	CTAG	4 cut(s)	35, 125, 525, 1995
BfmI	CTRYAG	3 cut(s)	78, 2136, 2208
BfoI	RGCGCY	1 cut(s)	283
BfrI	CTTAAG	1 cut(s)	641
BfuAI	ACCTGC	1 cut(s)	1440
BglI	GCCNNNNNGGC	2 cut(s)	173, 1672
BmcAI	AGTACT	1 cut(s)	2182
Bme18I	GGWCC	3 cut(s)	301, 1292, 1757
BmeT110I	CYCGRG	2 cut(s)	437, 760
BmgT120I	GGNCC	5 cut(s)	301, 758, 1292, 1673, 1757
BmrI	ACTGGG	1 cut(s)	1784
BmsI	GCATC	8 cut(s)	471, 925, 1090, 1168, 1361, 1680, 2081, 2224
BmuI	ACTGGG	1 cut(s)	1784
BplI	GAGNNNNNCTC	4 cut(s)	1300, 1332, 1951, 1983
BpmI	CTGGAG	2 cut(s)	1927, 1956
Bpu10I	CCTNAGC	1 cut(s)	1010
Bpu14I	TTCGAA	1 cut(s)	1856
BpuEI	CTTGAG	2 cut(s)	488, 1466
BpuMI	CCSGG	2 cut(s)	729, 799
BsaBI	GATNNNNATC	2 cut(s)	812, 1215
BsaHI	GRCGYC	2 cut(s)	165, 280
BsaI	GGTCTC	4 cut(s)	247, 260, 534, 788
BsaWI	WCCGGW	2 cut(s)	70, 1346
Bse118I	RCCGGY	5 cut(s)	294, 391, 1346, 1678, 1892
Bse1I	ACTGG	4 cut(s)	1528, 1710, 1790, 1944
Bse3DI	GCAATG	1 cut(s)	2046
Bse8I	GATNNNNATC	2 cut(s)	812, 1215
BseAI	TCCGGA	1 cut(s)	70
BseBI	CCWGG	9 cut(s)	326, 1077, 1296, 1362, 1671, 1752, 1851, 1923, 1974
BseJI	GATNNNNATC	2 cut(s)	812, 1215
BseMI	GCAATG	1 cut(s)	2046
BseMII	CTCAG	6 cut(s)	303, 647, 788, 1224, 1245, 2162
BseNI	ACTGG	4 cut(s)	1528, 1710, 1790, 1944
BseSI	GKGCMC	2 cut(s)	1906, 1930
BseX3I	CGGCCG	1 cut(s)	159
BseXI	GCAGC	6 cut(s)	303, 319, 354, 925, 979, 1034
BseYI	CCCAGC	2 cut(s)	944, 1737
BsgI	GTGCAG	1 cut(s)	2250
Bsh1236I	CGCG	2 cut(s)	367, 595
Bsh1285I	CGRYCG	3 cut(s)	162, 180, 231
BshFI	GGCC	8 cut(s)	8, 161, 682, 759, 1499, 1675, 1892, 2055
BshNI	GGYRCC	3 cut(s)	279, 1428, 1724
BshTI	ACCGGT	1 cut(s)	1346
BsiEI	CGRYCG	3 cut(s)	162, 180, 231
BsiHKAI	GWGCWC	3 cut(s)	1906, 1930, 2030
BsiHKCI	CYCGRG	2 cut(s)	437, 760
BslFI	GGGAC	6 cut(s)	88, 314, 1048, 1201, 1258, 1312
BsmAI	GTCTC	6 cut(s)	88, 247, 260, 534, 788, 2255
BsmFI	GGGAC	6 cut(s)	88, 314, 1048, 1201, 1258, 1312
BsnI	GGCC	8 cut(s)	8, 161, 682, 759, 1499, 1675, 1892, 2055
Bso31I	GGTCTC	4 cut(s)	247, 260, 534, 788
BsoBI	CYCGRG	2 cut(s)	437, 760
Bsp119I	TTCGAA	1 cut(s)	1856
Bsp1286I	GDGCHC	4 cut(s)	387, 1906, 1930, 2030
Bsp13I	TCCGGA	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	1419
Bsp143I	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
Bsp19I	CCATGG	2 cut(s)	1796, 2168
BspANI	GGCC	8 cut(s)	8, 161, 682, 759, 1499, 1675, 1892, 2055
BspCNI	CTCAG	6 cut(s)	304, 646, 787, 1225, 1246, 2161
BspEI	TCCGGA	1 cut(s)	70
BspFNI	CGCG	2 cut(s)	367, 595
BspMAI	CTGCAG	1 cut(s)	2140
BspMI	ACCTGC	1 cut(s)	1440
BspPI	GGATC	2 cut(s)	428, 869
BspT104I	TTCGAA	1 cut(s)	1856
BspT107I	GGYRCC	3 cut(s)	279, 1428, 1724
BspTI	CTTAAG	1 cut(s)	641
BspTNI	GGTCTC	4 cut(s)	247, 260, 534, 788
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	2046
BsrFI	RCCGGY	5 cut(s)	294, 391, 1346, 1678, 1892
BsrGI	TGTACA	1 cut(s)	1419
BsrI	ACTGG	4 cut(s)	1528, 1710, 1790, 1944
BssAI	RCCGGY	5 cut(s)	294, 391, 1346, 1678, 1892
BssMI	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
BssNI	GRCGYC	2 cut(s)	165, 280
BssSI	CACGAG	1 cut(s)	271
BssT1I	CCWWGG	2 cut(s)	1796, 2168
Bst2BI	CACGAG	1 cut(s)	271
Bst2UI	CCWGG	9 cut(s)	326, 1077, 1296, 1362, 1671, 1752, 1851, 1923, 1974
Bst4CI	ACNGT	3 cut(s)	1249, 1479, 1660
Bst6I	CTCTTC	4 cut(s)	344, 493, 773, 851
BstACI	GRCGYC	2 cut(s)	165, 280
BstAFI	CTTAAG	1 cut(s)	641
BstAUI	TGTACA	1 cut(s)	1419
BstBI	TTCGAA	1 cut(s)	1856
BstC8I	GCNNGC	8 cut(s)	169, 278, 1309, 1591, 1642, 1646, 1680, 2037
BstDEI	CTNAG	8 cut(s)	312, 633, 774, 1010, 1233, 1254, 1266, 2148
BstDSI	CCRYGG	3 cut(s)	1319, 1796, 2168
BstEII	GGTNACC	1 cut(s)	1784
BstENI	CCTNNNNNAGG	1 cut(s)	1971
BstFNI	CGCG	2 cut(s)	367, 595
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	3 cut(s)	282, 595, 2203
BstKTI	GATC	6 cut(s)	40, 192, 436, 877, 1464, 1622
BstMAI	GTCTC	6 cut(s)	88, 247, 260, 534, 788, 2255
BstMBI	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
BstMCI	CGRYCG	3 cut(s)	162, 180, 231
BstNI	CCWGG	9 cut(s)	326, 1077, 1296, 1362, 1671, 1752, 1851, 1923, 1974
BstNSI	RCATGY	2 cut(s)	902, 1864
BstPI	GGTNACC	1 cut(s)	1784
BstSFI	CTRYAG	3 cut(s)	78, 2136, 2208
BstSLI	GKGCMC	2 cut(s)	1906, 1930
BstUI	CGCG	2 cut(s)	367, 595
BstV1I	GCAGC	6 cut(s)	303, 319, 354, 925, 979, 1034
BstXI	CCANNNNNNTGG	2 cut(s)	394, 1797
BstZI	CGGCCG	1 cut(s)	159
BsuRI	GGCC	8 cut(s)	8, 161, 682, 759, 1499, 1675, 1892, 2055
BtgI	CCRYGG	3 cut(s)	1319, 1796, 2168
BtgZI	GCGATG	1 cut(s)	99
BtsIMutI	CAGTG	1 cut(s)	1951
BveI	ACCTGC	1 cut(s)	1440
Cac8I	GCNNGC	8 cut(s)	169, 278, 1309, 1591, 1642, 1646, 1680, 2037
CaiI	CAGNNNCTG	1 cut(s)	1253
CfoI	GCGC	3 cut(s)	282, 595, 2203
Cfr10I	RCCGGY	5 cut(s)	294, 391, 1346, 1678, 1892
Cfr13I	GGNCC	5 cut(s)	301, 758, 1292, 1673, 1757
CseI	GACGC	2 cut(s)	173, 935
Csp6I	GTAC	5 cut(s)	724, 1420, 1429, 1864, 2181
CspAI	ACCGGT	1 cut(s)	1346
CspCI	CAANNNNNGTGG	2 cut(s)	1126, 1161
CviAII	CATG	8 cut(s)	559, 899, 1403, 1594, 1797, 1861, 2169, 2254
CviQI	GTAC	5 cut(s)	724, 1420, 1429, 1864, 2181
DdeI	CTNAG	8 cut(s)	312, 633, 774, 1010, 1233, 1254, 1266, 2148
DinI	GGCGCC	1 cut(s)	281
DpnI	GATC	6 cut(s)	39, 191, 435, 876, 1463, 1621
DpnII	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
DrdI	GACNNNNNNGTC	1 cut(s)	239
DseDI	GACNNNNNNGTC	1 cut(s)	239
EaeI	YGGCCR	4 cut(s)	159, 1497, 1890, 2053
EagI	CGGCCG	1 cut(s)	159
Eam1104I	CTCTTC	4 cut(s)	344, 493, 773, 851
EarI	CTCTTC	4 cut(s)	344, 493, 773, 851
EciI	GGCGGA	3 cut(s)	270, 392, 686
Ecl136II	GAGCTC	1 cut(s)	2028
EclXI	CGGCCG	1 cut(s)	159
Eco130I	CCWWGG	2 cut(s)	1796, 2168
Eco24I	GRGCYC	2 cut(s)	387, 2030
Eco31I	GGTCTC	4 cut(s)	247, 260, 534, 788
Eco47I	GGWCC	3 cut(s)	301, 1292, 1757
Eco52I	CGGCCG	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	2028
Eco57I	CTGAAG	1 cut(s)	1287
Eco88I	CYCGRG	2 cut(s)	437, 760
Eco91I	GGTNACC	1 cut(s)	1784
EcoICRI	GAGCTC	1 cut(s)	2028
EcoNI	CCTNNNNNAGG	1 cut(s)	1971
EcoO109I	RGGNCCY	1 cut(s)	301
EcoO65I	GGTNACC	1 cut(s)	1784
EcoRI	GAATTC	1 cut(s)	428
EcoRII	CCWGG	9 cut(s)	324, 1075, 1294, 1360, 1669, 1750, 1849, 1921, 1972
EcoT14I	CCWWGG	2 cut(s)	1796, 2168
EcoT38I	GRGCYC	2 cut(s)	387, 2030
EgeI	GGCGCC	1 cut(s)	281
EheI	GGCGCC	1 cut(s)	281
ErhI	CCWWGG	2 cut(s)	1796, 2168
FaeI	CATG	8 cut(s)	562, 902, 1406, 1597, 1800, 1864, 2172, 2257
FaqI	GGGAC	6 cut(s)	88, 314, 1048, 1201, 1258, 1312
FatI	CATG	8 cut(s)	558, 898, 1402, 1593, 1796, 1860, 2168, 2253
FauI	CCCGC	4 cut(s)	55, 114, 312, 338
FauNDI	CATATG	1 cut(s)	2080
FriOI	GRGCYC	2 cut(s)	387, 2030
FspBI	CTAG	4 cut(s)	35, 125, 525, 1995
GlaI	GCGC	3 cut(s)	281, 594, 2202
GsaI	CCCAGC	2 cut(s)	948, 1741
GsuI	CTGGAG	2 cut(s)	1927, 1956
HaeII	RGCGCY	1 cut(s)	283
HaeIII	GGCC	8 cut(s)	8, 161, 682, 759, 1499, 1675, 1892, 2055
HgaI	GACGC	2 cut(s)	173, 935
HhaI	GCGC	3 cut(s)	282, 595, 2203
Hin1I	GRCGYC	2 cut(s)	165, 280
Hin1II	CATG	8 cut(s)	562, 902, 1406, 1597, 1800, 1864, 2172, 2257
Hin6I	GCGC	3 cut(s)	280, 593, 2201
HinP1I	GCGC	3 cut(s)	280, 593, 2201
HindIII	AAGCTT	4 cut(s)	447, 689, 701, 1607
HinfI	GANTC	8 cut(s)	74, 314, 335, 442, 637, 1256, 1545, 1879
HphI	GGTGA	5 cut(s)	32, 1082, 1160, 1496, 1699
Hpy166II	GTNNAC	2 cut(s)	1904, 1928
Hpy188III	TCNNGA	7 cut(s)	71, 437, 503, 932, 1104, 1253, 1549
Hpy8I	GTNNAC	2 cut(s)	1904, 1928
Hpy99I	CGWCG	3 cut(s)	167, 538, 883
HpyAV	CCTTC	7 cut(s)	139, 512, 817, 829, 1177, 1607, 2214
HpyCH4III	ACNGT	3 cut(s)	1249, 1479, 1660
HpyF3I	CTNAG	8 cut(s)	312, 633, 774, 1010, 1233, 1254, 1266, 2148
Hsp92I	GRCGYC	2 cut(s)	165, 280
Hsp92II	CATG	8 cut(s)	562, 902, 1406, 1597, 1800, 1864, 2172, 2257
HspAI	GCGC	3 cut(s)	280, 593, 2201
KasI	GGCGCC	1 cut(s)	279
KflI	GGGWCCC	1 cut(s)	301
Kpn2I	TCCGGA	1 cut(s)	70
KpnI	GGTACC	1 cut(s)	1432
KroI	GCCGGC	1 cut(s)	1678
KroNI	GCCGGC	1 cut(s)	1680
Kzo9I	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
LmnI	GCTCC	9 cut(s)	382, 468, 521, 541, 1771, 1816, 1831, 1840, 2025
Lsp1109I	GCAGC	6 cut(s)	303, 319, 354, 925, 979, 1034
LweI	GCATC	8 cut(s)	471, 925, 1090, 1168, 1361, 1680, 2081, 2224
MaeI	CTAG	4 cut(s)	35, 125, 525, 1995
MaeIII	GTNAC	6 cut(s)	731, 1484, 1519, 1784, 1961, 2084
MalI	GATC	6 cut(s)	39, 191, 435, 876, 1463, 1621
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
MboII	GAAGA	8 cut(s)	361, 480, 790, 817, 868, 1210, 1213, 2067
MfeI	CAATTG	1 cut(s)	1623
MhlI	GDGCHC	4 cut(s)	387, 1906, 1930, 2030
MlsI	TGGCCA	2 cut(s)	1499, 2055
MluCI	AATT	8 cut(s)	428, 570, 624, 655, 736, 1222, 1623, 1990
MluNI	TGGCCA	2 cut(s)	1499, 2055
Mly113I	GGCGCC	1 cut(s)	280
MlyI	GAGTC	5 cut(s)	83, 323, 344, 1265, 1888
MmeI	TCCRAC	4 cut(s)	78, 297, 458, 861
Mox20I	TGGCCA	2 cut(s)	1499, 2055
MroI	TCCGGA	1 cut(s)	70
MroNI	GCCGGC	1 cut(s)	1678
MscI	TGGCCA	2 cut(s)	1499, 2055
MseI	TTAA	5 cut(s)	573, 642, 1119, 1383, 1746
MslI	CAYNNNNRTG	2 cut(s)	713, 1493
Msp20I	TGGCCA	2 cut(s)	1499, 2055
MspA1I	CMGCKG	1 cut(s)	345
MspCI	CTTAAG	1 cut(s)	641
MunI	CAATTG	1 cut(s)	1623
MvaI	CCWGG	9 cut(s)	326, 1077, 1296, 1362, 1671, 1752, 1851, 1923, 1974
MvnI	CGCG	2 cut(s)	367, 595
NaeI	GCCGGC	1 cut(s)	1680
NarI	GGCGCC	1 cut(s)	280
NciI	CCSGG	2 cut(s)	729, 799
NcoI	CCATGG	2 cut(s)	1796, 2168
NdeI	CATATG	1 cut(s)	2080
NdeII	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
NgoMIV	GCCGGC	1 cut(s)	1678
NlaIII	CATG	8 cut(s)	562, 902, 1406, 1597, 1800, 1864, 2172, 2257
NmeAIII	GCCGAG	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	1484
NspI	RCATGY	2 cut(s)	902, 1864
NspV	TTCGAA	1 cut(s)	1856
PciI	ACATGT	1 cut(s)	1860
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PdiI	GCCGGC	1 cut(s)	1680
PfeI	GAWTC	3 cut(s)	442, 637, 1545
PflMI	CCANNNNNTGG	1 cut(s)	2051
PfoI	TCCNGGA	1 cut(s)	1972
PinAI	ACCGGT	1 cut(s)	1346
PleI	GAGTC	5 cut(s)	82, 322, 343, 1264, 1887
PluTI	GGCGCC	1 cut(s)	283
PpsI	GAGTC	5 cut(s)	82, 322, 343, 1264, 1887
PpuMI	RGGWCCY	1 cut(s)	301
PscI	ACATGT	1 cut(s)	1860
PsiI	TTATAA	1 cut(s)	752
Psp124BI	GAGCTC	1 cut(s)	2030
Psp5II	RGGWCCY	1 cut(s)	301
Psp6I	CCWGG	9 cut(s)	324, 1075, 1294, 1360, 1669, 1750, 1849, 1921, 1972
PspEI	GGTNACC	1 cut(s)	1784
PspFI	CCCAGC	2 cut(s)	944, 1737
PspGI	CCWGG	9 cut(s)	324, 1075, 1294, 1360, 1669, 1750, 1849, 1921, 1972
PspPI	GGNCC	5 cut(s)	301, 758, 1292, 1673, 1757
PspPPI	RGGWCCY	1 cut(s)	301
PsrI	GAACNNNNNNTAC	6 cut(s)	641, 673, 1850, 1882, 2234, 2266
PstI	CTGCAG	1 cut(s)	2140
PstNI	CAGNNNCTG	1 cut(s)	1253
RsaI	GTAC	5 cut(s)	725, 1421, 1430, 1865, 2182
RsaNI	GTAC	5 cut(s)	724, 1420, 1429, 1864, 2181
RseI	CAYNNNNRTG	2 cut(s)	713, 1493
SacI	GAGCTC	1 cut(s)	2030
SaqAI	TTAA	5 cut(s)	573, 642, 1119, 1383, 1746
Sau3AI	GATC	6 cut(s)	37, 189, 433, 874, 1461, 1619
Sau96I	GGNCC	5 cut(s)	301, 758, 1292, 1673, 1757
ScaI	AGTACT	1 cut(s)	2182
SchI	GAGTC	5 cut(s)	83, 323, 344, 1265, 1888
SduI	GDGCHC	4 cut(s)	387, 1906, 1930, 2030
SfaNI	GCATC	8 cut(s)	471, 925, 1090, 1168, 1361, 1680, 2081, 2224
SfcI	CTRYAG	3 cut(s)	78, 2136, 2208
SfoI	GGCGCC	1 cut(s)	281
SfuI	TTCGAA	1 cut(s)	1856
SinI	GGWCC	3 cut(s)	301, 1292, 1757
SmiMI	CAYNNNNRTG	2 cut(s)	713, 1493
SmlI	CTYRAG	3 cut(s)	467, 641, 1445
SmoI	CTYRAG	3 cut(s)	467, 641, 1445
Sse9I	AATT	8 cut(s)	428, 570, 624, 655, 736, 1222, 1623, 1990
SspDI	GGCGCC	1 cut(s)	279
SspMI	CTAG	4 cut(s)	35, 125, 525, 1995
SstI	GAGCTC	1 cut(s)	2030
StyI	CCWWGG	2 cut(s)	1796, 2168
TaaI	ACNGT	3 cut(s)	1249, 1479, 1660
TaqI	TCGA	5 cut(s)	27, 432, 589, 1112, 1856
TaqII	GACCGA	1 cut(s)	245
TasI	AATT	8 cut(s)	428, 570, 624, 655, 736, 1222, 1623, 1990
TatI	WGTACW	3 cut(s)	1419, 1863, 2180
TfiI	GAWTC	3 cut(s)	442, 637, 1545
Tru1I	TTAA	5 cut(s)	573, 642, 1119, 1383, 1746
Tru9I	TTAA	5 cut(s)	573, 642, 1119, 1383, 1746
TscAI	CASTG	1 cut(s)	1951
TseFI	GTSAC	1 cut(s)	1484
TseI	GCWGC	6 cut(s)	291, 307, 342, 938, 967, 1022
Tsp45I	GTSAC	1 cut(s)	1484
TspDTI	ATGAA	5 cut(s)	731, 1196, 1610, 2067, 2242
TspGWI	ACGGA	4 cut(s)	216, 522, 867, 1308
TspRI	CASTG	1 cut(s)	1951
Van91I	CCANNNNNTGG	1 cut(s)	2051
Vha464I	CTTAAG	1 cut(s)	641
VneI	GTGCAC	2 cut(s)	1902, 1926
VpaK11BI	GGWCC	3 cut(s)	301, 1292, 1757
XagI	CCTNNNNNAGG	1 cut(s)	1971
XapI	RAATTY	3 cut(s)	428, 1222, 1990
XceI	RCATGY	2 cut(s)	902, 1864
XspI	CTAG	4 cut(s)	35, 125, 525, 1995
ZrmI	AGTACT	1 cut(s)	2182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.