Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Reverse (-)

6042785 .. 6046289

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026786

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2274 bp

ATGGAGGCCATCCAACCAAACCCTATCGAAACCCTGGATCACCAACCTCCCTCCGAACCCCCCGCCTCCTACAACCACCACCCTCCTTCGGAATCTCTAGTCTCCGATTACAAGGACCCCTCTCCGTCCCCATCTCAAACCCTAGCCTCCCAGGCCGCCGCCGCTGTCGAGAACGGAAATTCCGCCGACGCCGGCAAGGCGGTTGCTCTGCTGATATCGGAGAACGGACTGACCAACACGCAGAGCGGGACGACCGACCGGGAAGTCTCCGGCGGAGAGGAGGAGACCACGAGCAGACGGCGCCGTCGCAGCCGGTGGGACCCGCAGCCTGAGTCGGAGAACCAGGGGGACGAGTCCGGTAGCGGGAAGAGGAAGAGGAAGTCGCGGTGGGCCGCCGAGGAGCCCAAGCCAGTGGTTCAGCTGCCGGATTTCATGGGAGGTATAGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTCTCTTCGGGTTTGCCTTTGGATGACAGACCCGAAGGAGCTAGGTCTCCGTCGCCGGAGCCGGTGTATGATAACATGGGGATTAGGATTAATACTAGAGAGTTTCGAGCGCGTGAGAGGTTGAATAGAGAGAGGCAGGAGATTATTGCTCAGATTCTTAAGAGGAACCCTAACTATAAGCCTCCGGCGGATTACAGGCCGCCTAAGCTTCACAAGAAGCTGTACATTCCCATGAAGGAGTACCCTGGTTATAATTTTATTGGGCTTATTATCGGTCCAAGGGGTAATACTCAGAAGAGGATGGAGAAAGAAACTGGTGCGAAGATTGTGATTAGGGGGAAAGGGTCTGTGAAGGAGGGTAGGTTGCAACAGAAGAGGGATTTGAAGCCTGATCCGTCGGAGAATGAGGACTTGCATGTTCTGGTTGAGGCTGACACGCAAGATGCTCTTGATGCCGCAGCTGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTCAGGGAACTCGCAGCCTTGAATGGGACTATAAGGGATGAGGAGTATTGTAGGTTATGTGGTGAGCCTGGGCATCGTCAGTATGCATGTCCATCACGAACCTCAACCTTTAAGAGTGATGTGCTCTGTAAGATATGTGGTGATGGTGGGCATCCTACTATTGATTGTCCGATGAAGGGTACATCTGGGAAGAAAATGGACGATGAGTATCAGAATTTTTTGGCTGAGTTAGGTGGGACAGTTCCCGAGTCAGCAACTAAGCAGACTGCTACTCTGGCTCTTGGCCCAGGGACTTCAGTAAGCAATCCTCCGTGGTCTAACAGTGGTGGGAGTGCTAGCAGTGCATCACATCCAGGGTTGGGTTTTTCTGGAATTAAGCCTACTACAAAGGAACATGACGACACAAATTTGTACATTGGATACTTGCCACCTACACTTGAGGATGATGGTTTGATCGGTATGTTTTCACAGTTCGGTGACATTGTGATGGCCAAAGTTATCAAGGACCGGGTTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCAGATGGCTAATAATGCTATTGCAAGCATGAATGGCTTTCGGCTTGAGGGGCGATCAATTGCTGTCAGAGTTGCTGGCAAGCCTCCCCAGCCTGTTGTGCCTCCCGGACCGCCAGCTTCGGCAATGCCGTCATACCCTGTTTCCAGTCAGCCTGTTGGTGCCTATCCCTCTCAGCAGTTTGCCCCAGGTGGTCCTCTTGGGAATGCACCACCTACTAGCTATGCGGGTACTCCGGTTCCATGGGGACCTCCGGTTCCTCCTCCTTATGCTCCTTATGTCCCTCCCCCTCCTCCTAGTTCAGCAATGTTTTATCCTCCCATGAGTCAACCTATGGCTGGTTATGGTCCACGGTACCCTCCTCCCCCTGGTGCACCACCTCAGCTGCCCTCCAGTGAAGCACAGCAGAGTTACCCTCCTCCAGGAGTTCAATCTGAAAACCCTACCCAATCTTTACCAACTAATATGTATGGGAGCTCTTTACCGGCAATGCCACCAAATGGTCAACACGCTTATCCTCCATCTTCATATGGTTACTCATCTTACTACAACGCTGTTCCACCTCCCCCTCCCTCAACTACAGACCAATCTCAGAACATTGTTGACAGGACTAATGTTTCTTGGAGCTCTTGTCAACGTGATTTCTTACCTCTTGCCATGACTTTGTTGGAAGTTTGGGACTCACATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

758

Amino Acids

82.06

Weight (kDa)

5.87

Isoelectric Point (pI)

61.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	126 - 233	5.8e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	247 - 329	7.5e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	479 - 548	2.2e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	753
AasI	GACNNNNNNGTC	2 cut(s)	263, 303
Acc65I	GGTACC	1 cut(s)	1935
AccB1I	GGYRCC	3 cut(s)	300, 1742, 1935
AccB7I	CCANNNNNTGG	1 cut(s)	2081
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	2 cut(s)	385, 613
AclWI	GGATC	3 cut(s)	45, 446, 887
AcoI	YGGCCR	1 cut(s)	1515
AcsI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
AcuI	CTGAAG	1 cut(s)	1305
AcyI	GRCGYC	2 cut(s)	189, 301
AfaI	GTAC	7 cut(s)	725, 743, 1207, 1439, 1574, 1813, 1937
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	7 cut(s)	464, 472, 625, 886, 1006, 1048, 2012
AloI	GAACNNNNNNTCC	4 cut(s)	164, 196, 1821, 1853
Alw21I	GWGCWC	4 cut(s)	1152, 1957, 2060, 2210
Alw26I	GTCTC	4 cut(s)	106, 271, 278, 552
Alw44I	GTGCAC	1 cut(s)	1953
AlwI	GGATC	3 cut(s)	45, 446, 887
Ama87I	CYCGRG	1 cut(s)	1271
AoxI	GGCC	6 cut(s)	6, 153, 390, 698, 1309, 1515
ApaLI	GTGCAC	1 cut(s)	1953
ApeKI	GCWGC	7 cut(s)	309, 325, 421, 959, 985, 1040, 1966
ApoI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
AseI	ATTAAT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	1935
AspLEI	GCGC	2 cut(s)	303, 613
AsuC2I	CCSGG	3 cut(s)	260, 1535, 1689
AsuHPI	GGTGA	4 cut(s)	32, 1100, 1178, 1514
AsuNHI	GCTAGC	1 cut(s)	1361
AvaI	CYCGRG	1 cut(s)	1271
AvaII	GGWCC	8 cut(s)	115, 319, 776, 1531, 1691, 1775, 1829, 1928
BaeGI	GKGCMC	1 cut(s)	1957
BaeI	ACNNNNGTAYC	2 cut(s)	1803, 1836
BalI	TGGCCA	1 cut(s)	1517
BanI	GGYRCC	3 cut(s)	300, 1742, 1935
BanII	GRGCYC	3 cut(s)	405, 2060, 2210
BauI	CACGAG	1 cut(s)	289
Bbv12I	GWGCWC	4 cut(s)	1152, 1957, 2060, 2210
BbvCI	CCTCAGC	1 cut(s)	1962
BbvI	GCAGC	7 cut(s)	321, 337, 408, 971, 997, 1052, 1953
BceAI	ACGGC	3 cut(s)	288, 314, 1696
BciVI	GTATCC	1 cut(s)	1439
BcnI	CCSGG	3 cut(s)	260, 1535, 1689
BcoDI	GTCTC	4 cut(s)	106, 271, 278, 552
BfaI	CTAG	7 cut(s)	98, 143, 543, 597, 1362, 1800, 1878
BfmI	CTRYAG	1 cut(s)	2160
BfoI	RGCGCY	1 cut(s)	304
BfrI	CTTAAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	1439
BglI	GCCNNNNNGGC	2 cut(s)	152, 197
Bme18I	GGWCC	8 cut(s)	115, 319, 776, 1531, 1691, 1775, 1829, 1928
BmeT110I	CYCGRG	1 cut(s)	1271
BmsI	GCATC	6 cut(s)	489, 934, 943, 1108, 1186, 1379
BmtI	GCTAGC	1 cut(s)	1365
BplI	GAGNNNNNCTC	2 cut(s)	1981, 2013
BpmI	CTGGAG	2 cut(s)	1957, 1986
Bpu10I	CCTNAGC	3 cut(s)	705, 1028, 1962
BpuEI	CTTGAG	3 cut(s)	506, 1484, 1649
BpuMI	CCSGG	3 cut(s)	260, 1535, 1689
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaHI	GRCGYC	2 cut(s)	189, 301
BsaI	GGTCTC	2 cut(s)	278, 552
BsaWI	WCCGGW	3 cut(s)	356, 1816, 1834
BsaXI	ACNNNNNCTCC	6 cut(s)	551, 581, 848, 878, 2197, 2227
Bse118I	RCCGGY	4 cut(s)	191, 312, 562, 2065
Bse1I	ACTGG	5 cut(s)	410, 820, 1546, 1728, 1974
Bse3DI	GCAATG	3 cut(s)	1713, 1893, 2076
Bse8I	GATNNNNATC	1 cut(s)	1233
BseJI	GATNNNNATC	1 cut(s)	1233
BseMI	GCAATG	3 cut(s)	1713, 1893, 2076
BseMII	CTCAG	8 cut(s)	321, 665, 806, 1042, 1242, 1769, 1976, 2186
BseNI	ACTGG	5 cut(s)	410, 820, 1546, 1728, 1974
BseRI	GAGGAG	8 cut(s)	293, 296, 413, 1082, 1833, 1863, 1932, 1989
BseSI	GKGCMC	1 cut(s)	1957
BseXI	GCAGC	7 cut(s)	321, 337, 408, 971, 997, 1052, 1953
BseYI	CCCAGC	2 cut(s)	962, 1671
Bsh1236I	CGCG	2 cut(s)	385, 613
Bsh1285I	CGRYCG	2 cut(s)	255, 259
BshFI	GGCC	6 cut(s)	8, 155, 392, 700, 1311, 1517
BshNI	GGYRCC	3 cut(s)	300, 1742, 1935
BsiEI	CGRYCG	2 cut(s)	255, 259
BsiHKAI	GWGCWC	4 cut(s)	1152, 1957, 2060, 2210
BsiHKCI	CYCGRG	1 cut(s)	1271
BslFI	GGGAC	9 cut(s)	112, 262, 332, 362, 1066, 1276, 1330, 1842, 1847
BsmAI	GTCTC	4 cut(s)	106, 271, 278, 552
BsmFI	GGGAC	9 cut(s)	112, 262, 332, 362, 1066, 1276, 1330, 1842, 1847
BsmI	GAATGC	1 cut(s)	1792
BsnI	GGCC	6 cut(s)	8, 155, 392, 700, 1311, 1517
Bso31I	GGTCTC	2 cut(s)	278, 552
BsoBI	CYCGRG	1 cut(s)	1271
Bsp1286I	GDGCHC	5 cut(s)	405, 1152, 1957, 2060, 2210
Bsp1407I	TGTACA	2 cut(s)	723, 1437
Bsp143I	GATC	5 cut(s)	37, 451, 892, 1479, 1637
Bsp19I	CCATGG	1 cut(s)	1823
BspANI	GGCC	6 cut(s)	8, 155, 392, 700, 1311, 1517
BspCNI	CTCAG	8 cut(s)	322, 664, 805, 1041, 1243, 1768, 1975, 2185
BspFNI	CGCG	2 cut(s)	385, 613
BspOI	GCTAGC	1 cut(s)	1365
BspPI	GGATC	3 cut(s)	45, 446, 887
BspT107I	GGYRCC	3 cut(s)	300, 1742, 1935
BspTI	CTTAAG	1 cut(s)	659
BspTNI	GGTCTC	2 cut(s)	278, 552
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	3 cut(s)	1713, 1893, 2076
BsrFI	RCCGGY	4 cut(s)	191, 312, 562, 2065
BsrGI	TGTACA	2 cut(s)	723, 1437
BsrI	ACTGG	5 cut(s)	410, 820, 1546, 1728, 1974
BssAI	RCCGGY	4 cut(s)	191, 312, 562, 2065
BssMI	GATC	5 cut(s)	37, 451, 892, 1479, 1637
BssNI	GRCGYC	2 cut(s)	189, 301
BssSI	CACGAG	1 cut(s)	289
BssT1I	CCWWGG	2 cut(s)	779, 1823
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
Bst6I	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
BstACI	GRCGYC	2 cut(s)	189, 301
BstAFI	CTTAAG	1 cut(s)	659
BstAUI	TGTACA	2 cut(s)	723, 1437
BstC8I	GCNNGC	6 cut(s)	193, 1363, 1609, 1660, 1664, 1698
BstDSI	CCRYGG	3 cut(s)	1337, 1823, 1931
BstENI	CCTNNNNNAGG	1 cut(s)	2001
BstFNI	CGCG	2 cut(s)	385, 613
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	303, 613
BstKTI	GATC	5 cut(s)	40, 454, 895, 1482, 1640
BstMAI	GTCTC	4 cut(s)	106, 271, 278, 552
BstMBI	GATC	5 cut(s)	37, 451, 892, 1479, 1637
BstMCI	CGRYCG	2 cut(s)	255, 259
BstNSI	RCATGY	2 cut(s)	920, 1116
BstSFI	CTRYAG	1 cut(s)	2160
BstSLI	GKGCMC	1 cut(s)	1957
BstUI	CGCG	2 cut(s)	385, 613
BstV1I	GCAGC	7 cut(s)	321, 337, 408, 971, 997, 1052, 1953
BstXI	CCANNNNNNTGG	1 cut(s)	412
BsuI	GTATCC	1 cut(s)	1439
BsuRI	GGCC	6 cut(s)	8, 155, 392, 700, 1311, 1517
BtgI	CCRYGG	3 cut(s)	1337, 1823, 1931
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	4 cut(s)	417, 1354, 1372, 1981
Cac8I	GCNNGC	6 cut(s)	193, 1363, 1609, 1660, 1664, 1698
CfoI	GCGC	2 cut(s)	303, 613
Cfr10I	RCCGGY	4 cut(s)	191, 312, 562, 2065
CpoI	CGGWCCG	1 cut(s)	1691
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	7 cut(s)	724, 742, 1206, 1438, 1573, 1812, 1936
CspI	CGGWCCG	1 cut(s)	1691
CviQI	GTAC	7 cut(s)	724, 742, 1206, 1438, 1573, 1812, 1936
DinI	GGCGCC	1 cut(s)	302
DpnI	GATC	5 cut(s)	39, 453, 894, 1481, 1639
DpnII	GATC	5 cut(s)	37, 451, 892, 1479, 1637
DrdI	GACNNNNNNGTC	2 cut(s)	263, 303
DseDI	GACNNNNNNGTC	2 cut(s)	263, 303
EaeI	YGGCCR	1 cut(s)	1515
Eam1104I	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
EarI	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
EciI	GGCGGA	3 cut(s)	172, 288, 704
Ecl136II	GAGCTC	2 cut(s)	2058, 2208
Eco130I	CCWWGG	2 cut(s)	779, 1823
Eco24I	GRGCYC	3 cut(s)	405, 2060, 2210
Eco31I	GGTCTC	2 cut(s)	278, 552
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	8 cut(s)	115, 319, 776, 1531, 1691, 1775, 1829, 1928
Eco53kI	GAGCTC	2 cut(s)	2058, 2208
Eco57I	CTGAAG	1 cut(s)	1305
Eco88I	CYCGRG	1 cut(s)	1271
EcoICRI	GAGCTC	2 cut(s)	2058, 2208
EcoNI	CCTNNNNNAGG	1 cut(s)	2001
EcoO109I	RGGNCCY	3 cut(s)	115, 319, 1829
EcoRI	GAATTC	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	2 cut(s)	779, 1823
EcoT22I	ATGCAT	1 cut(s)	1114
EcoT38I	GRGCYC	3 cut(s)	405, 2060, 2210
EgeI	GGCGCC	1 cut(s)	302
EheI	GGCGCC	1 cut(s)	302
ErhI	CCWWGG	2 cut(s)	779, 1823
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	9 cut(s)	112, 262, 332, 362, 1066, 1276, 1330, 1842, 1847
FauI	CCCGC	5 cut(s)	70, 239, 330, 356, 1801
FauNDI	CATATG	1 cut(s)	2110
FokI	GGATG	9 cut(s)	511, 536, 814, 979, 1007, 1076, 1164, 1362, 1481
FriOI	GRGCYC	3 cut(s)	405, 2060, 2210
FspBI	CTAG	7 cut(s)	98, 143, 543, 597, 1362, 1800, 1878
GlaI	GCGC	2 cut(s)	302, 612
GsaI	CCCAGC	2 cut(s)	966, 1675
GsuI	CTGGAG	2 cut(s)	1957, 1986
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	6 cut(s)	8, 155, 392, 700, 1311, 1517
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	2 cut(s)	303, 613
Hin1I	GRCGYC	2 cut(s)	189, 301
Hin6I	GCGC	2 cut(s)	301, 611
HinP1I	GCGC	2 cut(s)	301, 611
HincII	GTYRAC	4 cut(s)	1910, 2087, 2185, 2216
HindII	GTYRAC	4 cut(s)	1910, 2087, 2185, 2216
HindIII	AAGCTT	2 cut(s)	465, 707
HinfI	GANTC	7 cut(s)	92, 332, 353, 655, 1274, 1906, 2261
HphI	GGTGA	4 cut(s)	32, 1100, 1178, 1514
Hpy166II	GTNNAC	6 cut(s)	1910, 1931, 1955, 2087, 2185, 2216
Hpy188III	TCNNGA	7 cut(s)	169, 455, 485, 950, 1122, 1271, 1395
Hpy8I	GTNNAC	6 cut(s)	1910, 1931, 1955, 2087, 2185, 2216
Hpy99I	CGWCG	4 cut(s)	191, 309, 556, 901
HpyAV	CCTTC	5 cut(s)	96, 530, 730, 847, 1195
HpyCH4III	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
HpyCH4IV	ACGT	1 cut(s)	2218
HpyCH4V	TGCA	8 cut(s)	868, 916, 985, 1112, 1370, 1607, 1790, 1955
HpySE526I	ACGT	1 cut(s)	2218
Hsp92I	GRCGYC	2 cut(s)	189, 301
HspAI	GCGC	2 cut(s)	301, 611
KasI	GGCGCC	1 cut(s)	300
KflI	GGGWCCC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	1939
KroI	GCCGGC	1 cut(s)	191
KroNI	GCCGGC	1 cut(s)	193
Kzo9I	GATC	5 cut(s)	37, 451, 892, 1479, 1637
LmnI	GCTCC	6 cut(s)	400, 539, 559, 1858, 2055, 2205
Lsp1109I	GCAGC	7 cut(s)	321, 337, 408, 971, 997, 1052, 1953
LweI	GCATC	6 cut(s)	489, 934, 943, 1108, 1186, 1379
MaeI	CTAG	7 cut(s)	98, 143, 543, 597, 1362, 1800, 1878
MaeII	ACGT	1 cut(s)	2218
MaeIII	GTNAC	4 cut(s)	1502, 1537, 1991, 2114
MalI	GATC	5 cut(s)	39, 453, 894, 1481, 1639
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	5 cut(s)	37, 451, 892, 1479, 1637
MboII	GAAGA	8 cut(s)	379, 385, 498, 808, 835, 886, 1228, 2097
MfeI	CAATTG	1 cut(s)	1641
MhlI	GDGCHC	5 cut(s)	405, 1152, 1957, 2060, 2210
MlsI	TGGCCA	1 cut(s)	1517
MluCI	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
MluNI	TGGCCA	1 cut(s)	1517
Mly113I	GGCGCC	1 cut(s)	301
MlyI	GAGTC	5 cut(s)	341, 362, 1283, 1915, 2255
MmeI	TCCRAC	5 cut(s)	37, 315, 476, 879, 2229
Mox20I	TGGCCA	1 cut(s)	1517
Mph1103I	ATGCAT	1 cut(s)	1114
MroNI	GCCGGC	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	1517
MseI	TTAA	5 cut(s)	591, 660, 1137, 1401, 2272
MslI	CAYNNNNRTG	2 cut(s)	731, 1511
Msp20I	TGGCCA	1 cut(s)	1517
MspA1I	CMGCKG	4 cut(s)	164, 421, 962, 1966
MspCI	CTTAAG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	1641
Mva1269I	GAATGC	1 cut(s)	1792
MvnI	CGCG	2 cut(s)	385, 613
NaeI	GCCGGC	1 cut(s)	193
NarI	GGCGCC	1 cut(s)	301
NciI	CCSGG	3 cut(s)	260, 1535, 1689
NcoI	CCATGG	1 cut(s)	1823
NdeI	CATATG	1 cut(s)	2110
NdeII	GATC	5 cut(s)	37, 451, 892, 1479, 1637
NgoMIV	GCCGGC	1 cut(s)	191
NheI	GCTAGC	1 cut(s)	1361
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	1502
NsiI	ATGCAT	1 cut(s)	1114
NspI	RCATGY	2 cut(s)	920, 1116
PasI	CCCWGGG	1 cut(s)	1313
PcsI	WCGNNNNNNNCGW	1 cut(s)	1709
PctI	GAATGC	1 cut(s)	1792
PdiI	GCCGGC	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	92, 655
PflMI	CCANNNNNTGG	1 cut(s)	2081
PfoI	TCCNGGA	2 cut(s)	1687, 2002
PleI	GAGTC	5 cut(s)	340, 361, 1282, 1914, 2255
PluTI	GGCGCC	1 cut(s)	304
PpsI	GAGTC	5 cut(s)	340, 361, 1282, 1914, 2255
PpuMI	RGGWCCY	3 cut(s)	115, 319, 1829
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	1 cut(s)	753
Psp124BI	GAGCTC	2 cut(s)	2060, 2210
Psp5II	RGGWCCY	3 cut(s)	115, 319, 1829
PspFI	CCCAGC	2 cut(s)	962, 1671
PspPPI	RGGWCCY	3 cut(s)	115, 319, 1829
PvuII	CAGCTG	3 cut(s)	421, 962, 1966
RsaI	GTAC	7 cut(s)	725, 743, 1207, 1439, 1574, 1813, 1937
RsaNI	GTAC	7 cut(s)	724, 742, 1206, 1438, 1573, 1812, 1936
RseI	CAYNNNNRTG	2 cut(s)	731, 1511
Rsr2I	CGGWCCG	1 cut(s)	1691
RsrII	CGGWCCG	1 cut(s)	1691
SacI	GAGCTC	2 cut(s)	2060, 2210
SaqAI	TTAA	5 cut(s)	591, 660, 1137, 1401, 2272
Sau3AI	GATC	5 cut(s)	37, 451, 892, 1479, 1637
SchI	GAGTC	5 cut(s)	341, 362, 1283, 1915, 2255
SduI	GDGCHC	5 cut(s)	405, 1152, 1957, 2060, 2210
SfaNI	GCATC	6 cut(s)	489, 934, 943, 1108, 1186, 1379
SfcI	CTRYAG	1 cut(s)	2160
SfoI	GGCGCC	1 cut(s)	302
SinI	GGWCC	8 cut(s)	115, 319, 776, 1531, 1691, 1775, 1829, 1928
SmiMI	CAYNNNNRTG	2 cut(s)	731, 1511
SmlI	CTYRAG	4 cut(s)	485, 659, 1463, 1628
SmoI	CTYRAG	4 cut(s)	485, 659, 1463, 1628
Sse9I	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
SspDI	GGCGCC	1 cut(s)	300
SspMI	CTAG	7 cut(s)	98, 143, 543, 597, 1362, 1800, 1878
SstI	GAGCTC	2 cut(s)	2060, 2210
StyI	CCWWGG	2 cut(s)	779, 1823
TaaI	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
TaiI	ACGT	1 cut(s)	2221
TaqI	TCGA	4 cut(s)	27, 168, 450, 607
TaqII	GACCGA	2 cut(s)	269, 764
TasI	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
TatI	WGTACW	2 cut(s)	723, 1437
TauI	GCSGC	6 cut(s)	158, 161, 164, 395, 703, 959
TfiI	GAWTC	2 cut(s)	92, 655
Tru1I	TTAA	5 cut(s)	591, 660, 1137, 1401, 2272
Tru9I	TTAA	5 cut(s)	591, 660, 1137, 1401, 2272
TscAI	CASTG	4 cut(s)	417, 1354, 1372, 1981
TseFI	GTSAC	1 cut(s)	1502
TseI	GCWGC	7 cut(s)	309, 325, 421, 959, 985, 1040, 1966
Tsp45I	GTSAC	1 cut(s)	1502
TspDTI	ATGAA	5 cut(s)	421, 749, 1214, 1628, 2097
TspGWI	ACGGA	6 cut(s)	114, 189, 240, 540, 885, 1326
TspRI	CASTG	4 cut(s)	417, 1354, 1372, 1981
Van91I	CCANNNNNTGG	1 cut(s)	2081
Vha464I	CTTAAG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	1953
VpaK11BI	GGWCC	8 cut(s)	115, 319, 776, 1531, 1691, 1775, 1829, 1928
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	2001
XapI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
XceI	RCATGY	2 cut(s)	920, 1116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2245
XspI	CTAG	7 cut(s)	98, 143, 543, 597, 1362, 1800, 1878
Zsp2I	ATGCAT	1 cut(s)	1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.