Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Reverse (-)

5654180 .. 5656477

Gene Structure 2298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGAGGCCATCCAACCAAACCCTATCGAAACCCTAGATCACCAACCTCCCTCCGAAGCCCCCGCCTCCTACAACCACCACCCTCCTTCGGAATCTCTAGTCTCCGATTACAAGGACCCCTCTCCGCCCCCATCTCAAACCCTAGCCTCCCAGGCCGCCGCCGCCGCAGCCGAGAACGGCAATTCCGCCGACGCCGGCAAGGCCGTTGCTCTGTTGATCTCGGAGAACGGACTGACCAACACGCAGAGCGGGACGACCGACCGGGAAGTCTCCGGCGGAGAGGAGGAGACCACCAGCAGGCGGCGCCGTCGCAGCCGGTGGGACCCGCAGCCTGAGTCGGAGAACCAGGGGGATGAGTCTGGTAGCGGGAAGAGGAAGAGGAAGTCGCGGTGGGCCGCCGAGGAGCCCAAGCCGGTGGTTCAGCTGCCGGATTTCATGGGAGGTATAGAATTCGATCCTGAAATTCAAGCTCTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTCTCTTCGGGTTTGCCTTTGGATGACAGACCCGAAGGAGCTAGGTCTCCGTCCCCGGAGCCTGTGTATGATAACATGGGGATTAGGATTAATACTAGAGAGTTTCGAGCGCGTGAGAGGTTGAATAGAGAGAGGCAGGAGATTATTGCCCAGATTCTTAAGAGGAACCCTAACTATAAGCCTCCGGCGGATTACAGGCCGCCTAAGCTGCACAAGAAGCTTTACATTCCCATGAAGGAGTACCCTGGTTACAATTTTATTGGGCTTATTATCGGCCCACGGGGTAATACTCAAAAGAGGATGGAGAAAGAAACTGGTGCTAAAATTGTGATTAGGGGGAAAGGATCTGTGAAGGAGGGTAGGTTGCAACAGAAGAGGGATTTGAAACCTGATCCTTCGGAGAATGAGGATTTGCACGTTCTGGTTGAGGCTGATACGCAGGATGCTCTTGATGCTGCAGCTGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTCGCGGCGTTGAATGGGACTATTAGGGATGAGGAGTATTGTAGGTTATGTGGTGAGCCTGGGCATCGTCAGTATGCATGTCCTTCACGAACCTCAACCTTTAAGAGTGATGTGCTCTGTAAGATATGTGGTGATGGTGGGCATCCTACTATCGATTGTCCAATGAAGGGTACATCTGGGAAGAAAATGGATGATGAGTATCAGAATTTTTTGGCTGAGTTAGGTGGGACAGTTCCCGAGTCAGCAACTAAGCAGACTGCTACTCTGGCTCTTGGCCCAGGGACTTCAGTAAGCAATCCTCCGTGGTCTAACAGTGGTGGGAGTGCTAGCAGTGCATCACATCCAGGGTTGGGTTTTTCTGGAATTAAGCCTACTACAAAGGAACATGACGACACAAATTTGTACATTGGATACTTGCCACCTACTCTTGAGGATGATGGTTTGATTGGTATGTTTTCACAGTTCGGTGACATTGTGATGGCCAAAGTTATCAAGGACCGGGTTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTATGCAGATGTTCAGATGGCTAATAATGCTATTGCAAGCATGAATGGCTATCGGCTTGAGGGGCGATCGATTGCTGTCAGAGTTGCTGGCAAGCCTCCCCAGCCTGTTGTGCCTCCCGGACCGCCAACTTCGGCAATGCCGTCATACCCTGTTTCCAGTCAGCCTGTTGGTGCCTATCCCTCTCAGCAGTTTGCCCCAGGTGGTCCTCTTGGGAATGCACCACCTACTAACTATGCGGGTACTCCGGTTCCATGGGGACCTCCCGTTCCTCCTCCTTATGCTCCTTATGTCCCTCCCCCACCTCCTGGTTCAGCAATGTTTTATCCTCCCATGAGTCAACCTATGGCTGGTTATGGGCCACGGTACCCTCCTCCCCCTGGTGCACCACCTCAGCTGCCCTCCAGTGAAGCACAGCAGAGTTACCCTCCTCCAGGAGTTCAATCTGAAAACCCTACCCAATCTTTACCAACTAGTATGTATGGGAGCTCTTTACCGGCAATGCCACCAAATGGCCAACACACTTATCCTCCATCTTCATATGGTTATTCATCATACTACAATGCTGTTCCACCTCCCCCTCCCTCAACTACAGACCAATCTCAGAACATTGGTAATGTGCCATGGGCCACAAGTACTCCGGCTCCCCCTCCTGCTTCTTCTGCAGAGAAAGCAACGTATGGTGCAGATGCAGAGTATGAGAAGTTCATGGCAGAGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

765

Amino Acids

82.49

Weight (kDa)

5.83

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	127 - 234	5.9e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	248 - 330	7.6e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	480 - 549	1.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc65I	GGTACC	1 cut(s)	1938
AccB1I	GGYRCC	3 cut(s)	303, 1745, 1938
AccB7I	CCANNNNNTGG	2 cut(s)	1880, 2084
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	3 cut(s)	388, 616, 1043
AclWI	GGATC	3 cut(s)	449, 856, 890
AcoI	YGGCCR	2 cut(s)	1518, 2086
AcsI	RAATTY	4 cut(s)	449, 462, 1243, 1435
AcuI	CTGAAG	1 cut(s)	1308
AcyI	GRCGYC	2 cut(s)	192, 304
AfaI	GTAC	6 cut(s)	746, 1210, 1442, 1816, 1940, 2209
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	6 cut(s)	467, 628, 889, 1009, 1051, 2015
AhlI	ACTAGT	1 cut(s)	2045
AloI	GAACNNNNNNTCC	4 cut(s)	167, 199, 1824, 1856
Alw21I	GWGCWC	3 cut(s)	1155, 1960, 2063
Alw26I	GTCTC	5 cut(s)	106, 274, 281, 555, 2282
Alw44I	GTGCAC	1 cut(s)	1956
AlwI	GGATC	3 cut(s)	449, 856, 890
Ama87I	CYCGRG	1 cut(s)	1274
ApaLI	GTGCAC	1 cut(s)	1956
ApeKI	GCWGC	9 cut(s)	167, 312, 328, 424, 712, 959, 962, 988, 1969
ApoI	RAATTY	4 cut(s)	449, 462, 1243, 1435
AseI	ATTAAT	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	1938
AspLEI	GCGC	2 cut(s)	306, 616
AsuC2I	CCSGG	4 cut(s)	263, 560, 1538, 1692
AsuHPI	GGTGA	4 cut(s)	32, 1103, 1181, 1517
AsuNHI	GCTAGC	1 cut(s)	1364
AvaI	CYCGRG	1 cut(s)	1274
AvaII	GGWCC	6 cut(s)	115, 322, 1534, 1694, 1778, 1832
BaeGI	GKGCMC	1 cut(s)	1960
BaeI	ACNNNNGTAYC	2 cut(s)	1806, 1839
BalI	TGGCCA	2 cut(s)	1520, 2088
BanI	GGYRCC	3 cut(s)	303, 1745, 1938
BanII	GRGCYC	2 cut(s)	408, 2063
Bbv12I	GWGCWC	3 cut(s)	1155, 1960, 2063
BbvCI	CCTCAGC	1 cut(s)	1965
BbvI	GCAGC	9 cut(s)	179, 324, 340, 411, 699, 946, 974, 1000, 1956
BccI	CCATC	9 cut(s)	17, 139, 799, 964, 1166, 1469, 1510, 1585, 2113
BceAI	ACGGC	4 cut(s)	188, 193, 291, 1699
BciVI	GTATCC	1 cut(s)	1442
BcnI	CCSGG	4 cut(s)	263, 560, 1538, 1692
BcoDI	GTCTC	5 cut(s)	106, 274, 281, 555, 2282
BcuI	ACTAGT	1 cut(s)	2045
BfaI	CTAG	7 cut(s)	35, 98, 143, 546, 600, 1365, 2046
BfmI	CTRYAG	3 cut(s)	960, 2163, 2235
BfoI	RGCGCY	1 cut(s)	307
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	1442
BglI	GCCNNNNNGGC	2 cut(s)	152, 200
BmcAI	AGTACT	1 cut(s)	2209
Bme18I	GGWCC	6 cut(s)	115, 322, 1534, 1694, 1778, 1832
BmeT110I	CYCGRG	1 cut(s)	1274
BmsI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
BmtI	GCTAGC	1 cut(s)	1368
BplI	GAGNNNNNCTC	2 cut(s)	1984, 2016
BpmI	CTGGAG	2 cut(s)	1960, 1989
Bpu10I	CCTNAGC	3 cut(s)	708, 1031, 1965
BpuEI	CTTGAG	3 cut(s)	509, 1487, 1652
BpuMI	CCSGG	4 cut(s)	263, 560, 1538, 1692
Bsa29I	ATCGAT	2 cut(s)	1191, 1643
BsaBI	GATNNNNATC	1 cut(s)	1236
BsaHI	GRCGYC	2 cut(s)	192, 304
BsaI	GGTCTC	2 cut(s)	281, 555
BsaWI	WCCGGW	1 cut(s)	1819
Bse118I	RCCGGY	4 cut(s)	194, 315, 412, 2068
Bse1I	ACTGG	4 cut(s)	823, 1549, 1731, 1977
Bse3DI	GCAATG	3 cut(s)	1716, 1896, 2079
Bse8I	GATNNNNATC	1 cut(s)	1236
BseCI	ATCGAT	2 cut(s)	1191, 1643
BseJI	GATNNNNATC	1 cut(s)	1236
BseMI	GCAATG	3 cut(s)	1716, 1896, 2079
BseMII	CTCAG	5 cut(s)	324, 1245, 1772, 1979, 2189
BseNI	ACTGG	4 cut(s)	823, 1549, 1731, 1977
BseRI	GAGGAG	7 cut(s)	296, 299, 416, 1085, 1836, 1935, 1992
BseSI	GKGCMC	1 cut(s)	1960
BseXI	GCAGC	9 cut(s)	179, 324, 340, 411, 699, 946, 974, 1000, 1956
BseYI	CCCAGC	2 cut(s)	965, 1674
BsgI	GTGCAG	2 cut(s)	698, 2277
Bsh1236I	CGCG	3 cut(s)	388, 616, 1043
Bsh1285I	CGRYCG	3 cut(s)	258, 262, 1643
BshNI	GGYRCC	3 cut(s)	303, 1745, 1938
BshVI	ATCGAT	2 cut(s)	1191, 1643
BsiEI	CGRYCG	3 cut(s)	258, 262, 1643
BsiHKAI	GWGCWC	3 cut(s)	1155, 1960, 2063
BsiHKCI	CYCGRG	1 cut(s)	1274
BslFI	GGGAC	8 cut(s)	265, 335, 541, 1069, 1279, 1333, 1845, 1850
BsmAI	GTCTC	5 cut(s)	106, 274, 281, 555, 2282
BsmFI	GGGAC	8 cut(s)	265, 335, 541, 1069, 1279, 1333, 1845, 1850
BsmI	GAATGC	1 cut(s)	1795
Bso31I	GGTCTC	2 cut(s)	281, 555
BsoBI	CYCGRG	1 cut(s)	1274
Bsp1286I	GDGCHC	4 cut(s)	408, 1155, 1960, 2063
Bsp1407I	TGTACA	1 cut(s)	1440
Bsp143I	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
Bsp19I	CCATGG	2 cut(s)	1826, 2195
BspCNI	CTCAG	5 cut(s)	325, 1246, 1771, 1978, 2188
BspDI	ATCGAT	2 cut(s)	1191, 1643
BspFNI	CGCG	3 cut(s)	388, 616, 1043
BspMAI	CTGCAG	2 cut(s)	964, 2239
BspOI	GCTAGC	1 cut(s)	1368
BspPI	GGATC	3 cut(s)	449, 856, 890
BspT107I	GGYRCC	3 cut(s)	303, 1745, 1938
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	2 cut(s)	281, 555
BsrBI	CCGCTC	1 cut(s)	249
BsrDI	GCAATG	3 cut(s)	1716, 1896, 2079
BsrFI	RCCGGY	4 cut(s)	194, 315, 412, 2068
BsrGI	TGTACA	1 cut(s)	1440
BsrI	ACTGG	4 cut(s)	823, 1549, 1731, 1977
BssAI	RCCGGY	4 cut(s)	194, 315, 412, 2068
BssMI	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
BssNI	GRCGYC	2 cut(s)	192, 304
BssT1I	CCWWGG	2 cut(s)	1826, 2195
Bst4CI	ACNGT	4 cut(s)	1270, 1352, 1500, 1938
Bst6I	CTCTTC	4 cut(s)	365, 371, 514, 872
BstACI	GRCGYC	2 cut(s)	192, 304
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	1440
BstC8I	GCNNGC	6 cut(s)	196, 299, 1366, 1612, 1663, 1667
BstDEI	CTNAG	8 cut(s)	333, 708, 1031, 1254, 1287, 1758, 1965, 2175
BstDSI	CCRYGG	5 cut(s)	782, 1340, 1826, 1934, 2195
BstENI	CCTNNNNNAGG	1 cut(s)	2004
BstFNI	CGCG	3 cut(s)	388, 616, 1043
BstH2I	RGCGCY	1 cut(s)	307
BstHHI	GCGC	2 cut(s)	306, 616
BstKTI	GATC	6 cut(s)	40, 219, 457, 851, 898, 1643
BstMAI	GTCTC	5 cut(s)	106, 274, 281, 555, 2282
BstMBI	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
BstMCI	CGRYCG	3 cut(s)	258, 262, 1643
BstNSI	RCATGY	1 cut(s)	1119
BstSFI	CTRYAG	3 cut(s)	960, 2163, 2235
BstSLI	GKGCMC	1 cut(s)	1960
BstUI	CGCG	3 cut(s)	388, 616, 1043
BstV1I	GCAGC	9 cut(s)	179, 324, 340, 411, 699, 946, 974, 1000, 1956
BstX2I	RGATCY	1 cut(s)	848
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	848
Bsu15I	ATCGAT	2 cut(s)	1191, 1643
BsuI	GTATCC	1 cut(s)	1442
BsuTUI	ATCGAT	2 cut(s)	1191, 1643
BtgI	CCRYGG	5 cut(s)	782, 1340, 1826, 1934, 2195
BtsI	GCAGTG	1 cut(s)	1375
BtsIMutI	CAGTG	3 cut(s)	1357, 1375, 1984
Cac8I	GCNNGC	6 cut(s)	196, 299, 1366, 1612, 1663, 1667
CfoI	GCGC	2 cut(s)	306, 616
Cfr10I	RCCGGY	4 cut(s)	194, 315, 412, 2068
ClaI	ATCGAT	2 cut(s)	1191, 1643
CpoI	CGGWCCG	1 cut(s)	1694
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	6 cut(s)	745, 1209, 1441, 1815, 1939, 2208
CspI	CGGWCCG	1 cut(s)	1694
CviQI	GTAC	6 cut(s)	745, 1209, 1441, 1815, 1939, 2208
DdeI	CTNAG	8 cut(s)	333, 708, 1031, 1254, 1287, 1758, 1965, 2175
DinI	GGCGCC	1 cut(s)	305
DpnI	GATC	6 cut(s)	39, 218, 456, 850, 897, 1642
DpnII	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	1518, 2086
Eam1104I	CTCTTC	4 cut(s)	365, 371, 514, 872
EarI	CTCTTC	4 cut(s)	365, 371, 514, 872
EciI	GGCGGA	4 cut(s)	114, 175, 291, 707
Ecl136II	GAGCTC	1 cut(s)	2061
Eco130I	CCWWGG	2 cut(s)	1826, 2195
Eco24I	GRGCYC	2 cut(s)	408, 2063
Eco31I	GGTCTC	2 cut(s)	281, 555
Eco47I	GGWCC	6 cut(s)	115, 322, 1534, 1694, 1778, 1832
Eco53kI	GAGCTC	1 cut(s)	2061
Eco57I	CTGAAG	1 cut(s)	1308
Eco88I	CYCGRG	1 cut(s)	1274
EcoICRI	GAGCTC	1 cut(s)	2061
EcoNI	CCTNNNNNAGG	1 cut(s)	2004
EcoO109I	RGGNCCY	3 cut(s)	115, 322, 1832
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	1826, 2195
EcoT22I	ATGCAT	1 cut(s)	1117
EcoT38I	GRGCYC	2 cut(s)	408, 2063
EgeI	GGCGCC	1 cut(s)	305
EheI	GGCGCC	1 cut(s)	305
ErhI	CCWWGG	2 cut(s)	1826, 2195
FaqI	GGGAC	8 cut(s)	265, 335, 541, 1069, 1279, 1333, 1845, 1850
FauI	CCCGC	5 cut(s)	70, 242, 333, 359, 1804
FauNDI	CATATG	1 cut(s)	2113
FriOI	GRGCYC	2 cut(s)	408, 2063
FspBI	CTAG	7 cut(s)	35, 98, 143, 546, 600, 1365, 2046
GlaI	GCGC	2 cut(s)	305, 615
GsaI	CCCAGC	2 cut(s)	969, 1678
GsuI	CTGGAG	2 cut(s)	1960, 1989
HaeII	RGCGCY	1 cut(s)	307
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	2 cut(s)	306, 616
Hin1I	GRCGYC	2 cut(s)	192, 304
Hin6I	GCGC	2 cut(s)	304, 614
HinP1I	GCGC	2 cut(s)	304, 614
HincII	GTYRAC	1 cut(s)	1913
HindII	GTYRAC	1 cut(s)	1913
HindIII	AAGCTT	1 cut(s)	722
HinfI	GANTC	6 cut(s)	92, 335, 356, 658, 1277, 1909
HphI	GGTGA	4 cut(s)	32, 1103, 1181, 1517
Hpy166II	GTNNAC	2 cut(s)	1913, 1958
Hpy188III	TCNNGA	7 cut(s)	458, 488, 953, 1125, 1274, 1398, 1466
Hpy8I	GTNNAC	2 cut(s)	1913, 1958
Hpy99I	CGWCG	2 cut(s)	194, 312
HpyAV	CCTTC	7 cut(s)	96, 533, 733, 850, 909, 1131, 1198
HpyCH4III	ACNGT	4 cut(s)	1270, 1352, 1500, 1938
HpyCH4IV	ACGT	2 cut(s)	921, 2249
HpyF3I	CTNAG	8 cut(s)	333, 708, 1031, 1254, 1287, 1758, 1965, 2175
HpySE526I	ACGT	2 cut(s)	921, 2249
Hsp92I	GRCGYC	2 cut(s)	192, 304
HspAI	GCGC	2 cut(s)	304, 614
KasI	GGCGCC	1 cut(s)	303
KflI	GGGWCCC	1 cut(s)	322
KpnI	GGTACC	1 cut(s)	1942
KroI	GCCGGC	1 cut(s)	194
KroNI	GCCGGC	1 cut(s)	196
Kzo9I	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
LmnI	GCTCC	6 cut(s)	403, 542, 562, 1861, 2058, 2221
Lsp1109I	GCAGC	9 cut(s)	179, 324, 340, 411, 699, 946, 974, 1000, 1956
LweI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
MaeI	CTAG	7 cut(s)	35, 98, 143, 546, 600, 1365, 2046
MaeII	ACGT	2 cut(s)	921, 2249
MaeIII	GTNAC	4 cut(s)	752, 1505, 1540, 1994
MalI	GATC	6 cut(s)	39, 218, 456, 850, 897, 1642
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
MboII	GAAGA	7 cut(s)	382, 388, 501, 889, 1231, 2100, 2223
MflI	RGATCY	1 cut(s)	848
MhlI	GDGCHC	4 cut(s)	408, 1155, 1960, 2063
MlsI	TGGCCA	2 cut(s)	1520, 2088
MluCI	AATT	8 cut(s)	181, 449, 462, 757, 828, 1243, 1401, 1435
MluNI	TGGCCA	2 cut(s)	1520, 2088
Mly113I	GGCGCC	1 cut(s)	304
MlyI	GAGTC	4 cut(s)	344, 365, 1286, 1918
MmeI	TCCRAC	3 cut(s)	37, 318, 479
Mox20I	TGGCCA	2 cut(s)	1520, 2088
Mph1103I	ATGCAT	1 cut(s)	1117
MroNI	GCCGGC	1 cut(s)	194
MscI	TGGCCA	2 cut(s)	1520, 2088
MseI	TTAA	4 cut(s)	594, 663, 1140, 1404
MslI	CAYNNNNRTG	2 cut(s)	734, 1514
Msp20I	TGGCCA	2 cut(s)	1520, 2088
MspA1I	CMGCKG	3 cut(s)	424, 965, 1969
MspCI	CTTAAG	1 cut(s)	662
Mva1269I	GAATGC	1 cut(s)	1795
MvnI	CGCG	3 cut(s)	388, 616, 1043
NaeI	GCCGGC	1 cut(s)	196
NarI	GGCGCC	1 cut(s)	304
NciI	CCSGG	4 cut(s)	263, 560, 1538, 1692
NcoI	CCATGG	2 cut(s)	1826, 2195
NdeI	CATATG	1 cut(s)	2113
NdeII	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
NgoMIV	GCCGGC	1 cut(s)	194
NheI	GCTAGC	1 cut(s)	1364
NmeAIII	GCCGAG	2 cut(s)	196, 424
NmuCI	GTSAC	1 cut(s)	1505
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	1 cut(s)	1119
PasI	CCCWGGG	1 cut(s)	1316
PcsI	WCGNNNNNNNCGW	1 cut(s)	1712
PctI	GAATGC	1 cut(s)	1795
PdiI	GCCGGC	1 cut(s)	196
PfeI	GAWTC	2 cut(s)	92, 658
PflMI	CCANNNNNTGG	2 cut(s)	1880, 2084
PfoI	TCCNGGA	2 cut(s)	1690, 2005
Ple19I	CGATCG	1 cut(s)	1643
PleI	GAGTC	4 cut(s)	343, 364, 1285, 1917
PluTI	GGCGCC	1 cut(s)	307
PpsI	GAGTC	4 cut(s)	343, 364, 1285, 1917
PpuMI	RGGWCCY	3 cut(s)	115, 322, 1832
PshBI	ATTAAT	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	2063
Psp5II	RGGWCCY	3 cut(s)	115, 322, 1832
PspFI	CCCAGC	2 cut(s)	965, 1674
PspPPI	RGGWCCY	3 cut(s)	115, 322, 1832
PsrI	GAACNNNNNNTAC	2 cut(s)	2261, 2293
PstI	CTGCAG	2 cut(s)	964, 2239
PsuI	RGATCY	1 cut(s)	848
PvuI	CGATCG	1 cut(s)	1643
PvuII	CAGCTG	3 cut(s)	424, 965, 1969
RsaI	GTAC	6 cut(s)	746, 1210, 1442, 1816, 1940, 2209
RsaNI	GTAC	6 cut(s)	745, 1209, 1441, 1815, 1939, 2208
RseI	CAYNNNNRTG	2 cut(s)	734, 1514
Rsr2I	CGGWCCG	1 cut(s)	1694
RsrII	CGGWCCG	1 cut(s)	1694
SacI	GAGCTC	1 cut(s)	2063
SaqAI	TTAA	4 cut(s)	594, 663, 1140, 1404
Sau3AI	GATC	6 cut(s)	37, 216, 454, 848, 895, 1640
ScaI	AGTACT	1 cut(s)	2209
SchI	GAGTC	4 cut(s)	344, 365, 1286, 1918
SduI	GDGCHC	4 cut(s)	408, 1155, 1960, 2063
SfaNI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
SfcI	CTRYAG	3 cut(s)	960, 2163, 2235
SfoI	GGCGCC	1 cut(s)	305
SinI	GGWCC	6 cut(s)	115, 322, 1534, 1694, 1778, 1832
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1514
SmlI	CTYRAG	4 cut(s)	488, 662, 1466, 1631
SmoI	CTYRAG	4 cut(s)	488, 662, 1466, 1631
SpeI	ACTAGT	1 cut(s)	2045
Sse9I	AATT	8 cut(s)	181, 449, 462, 757, 828, 1243, 1401, 1435
SspDI	GGCGCC	1 cut(s)	303
SspMI	CTAG	7 cut(s)	35, 98, 143, 546, 600, 1365, 2046
SstI	GAGCTC	1 cut(s)	2063
StyI	CCWWGG	2 cut(s)	1826, 2195
TaaI	ACNGT	4 cut(s)	1270, 1352, 1500, 1938
TaiI	ACGT	2 cut(s)	924, 2252
TaqI	TCGA	5 cut(s)	27, 453, 610, 1191, 1643
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	8 cut(s)	181, 449, 462, 757, 828, 1243, 1401, 1435
TatI	WGTACW	2 cut(s)	1440, 2207
TauI	GCSGC	8 cut(s)	158, 161, 164, 167, 304, 398, 706, 1046
TfiI	GAWTC	2 cut(s)	92, 658
Tru1I	TTAA	4 cut(s)	594, 663, 1140, 1404
Tru9I	TTAA	4 cut(s)	594, 663, 1140, 1404
TscAI	CASTG	3 cut(s)	1357, 1375, 1984
TseFI	GTSAC	1 cut(s)	1505
TseI	GCWGC	9 cut(s)	167, 312, 328, 424, 712, 959, 962, 988, 1969
Tsp45I	GTSAC	1 cut(s)	1505
TspDTI	ATGAA	7 cut(s)	424, 752, 1217, 1631, 2100, 2112, 2269
TspGWI	ACGGA	3 cut(s)	243, 543, 1329
TspRI	CASTG	3 cut(s)	1357, 1375, 1984
Van91I	CCANNNNNTGG	2 cut(s)	1880, 2084
Vha464I	CTTAAG	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	1956
VpaK11BI	GGWCC	6 cut(s)	115, 322, 1534, 1694, 1778, 1832
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	2004
XapI	RAATTY	4 cut(s)	449, 462, 1243, 1435
XceI	RCATGY	1 cut(s)	1119
XspI	CTAG	7 cut(s)	35, 98, 143, 546, 600, 1365, 2046
ZrmI	AGTACT	1 cut(s)	2209
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.