Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

56900487 .. 56905598

Gene Structure 5112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG400800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGGGAACTCTCCGACCAAACCATAACCCTCCTCCCATTGACGATGATGAACCGGATCACGACCCGCCTTATTTTCCCGCCATTTCCGAAATCCCAATGCCTCCGCCTTCGCCTCTTCAGTGCGCTCAAACCCTAGCTTCCGGTGCCGGAATTCCCTCCCGGAATCCCGAGACTTCTACTGAGAACGGCGACTCGACCAAACCGGTTGCTAATGGCTTCGCCAACACGCACTTCGGCGCCGACCTGGACTTCTCCGGCGGAGAGGAGGAGGCCTCCAGCAGCCGCCGCCGCCGGAGCCGGTGGGACCCTCAGCCGGAGACGGAAAGCCAGAGCGGCGTCTGTGCGAGGAGGAGGAAGTCGCGGTGGGCCGATGAGGAGCCGAAGCCGGTGATTCAGCTGCCGGGGTTCATGGGAGGTATTGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCATCTTGAGATTAGTAGGATGTTGTCTTCCGGTTTGCCTTTAGATGATCGCCCGGAAGGGGATAGGTCTCCATCGCCGGAGCCGGTGTATGATAACTTTGGAATTAGGATTAATACAAGAGAGTTTCGTGCGCGTGAGAGGTTGAACAAAGAGAGGCAGGAAATTATTACTCAGATTATTAAGAGGAACCCCACATTTAAGCCTCCGGCAGATTACAGGCCGCCCAAGCTTCACAAGAAGCTGTACATACCCGTGAAAGAGTACCCTGGTTATAGTTTTATGGGACTTATCATTGGCCCGAGGGGGAATACCCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTCATTAGGGGTAGAGGGTCAGTGAAAGAGGGTAGGTCGCAACAGAAGAGGGATTCGAAGCCTGACCCGTCTGAAAATGAGGACTTGCATGTTTTGGTTGAGGCTGACACGCAGGAGGCTGTTGATGCCGCAACTGGGATGGTAGAGAAGCTGCTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAAGGAACTCGCGTTGTTGAATGGGACTATTAGGGAAGAGGAGTTTTGTAGGTTATGTGGTGAGCCGGGGCACCATCAGAATGCCTGTCTGTCACGAACTTCAACGTTTAAGAGTGATGTTCTTTGTAAGATATGTGGTGATGGTGGGCATCCAACTATTGATTGCCCAGTGAAGGGTACGAATGGGAAGAAAATGGATGATGAGTACCAGAACTTTTTGGCTGAGTTAGGTGGGACAATGCCTGAATCAGCAACTAAGCAGACTGCTACTTTGGCTCTTGGCGCAGGCAGTTCAGTAAGCAGTCCTCCTTGGGTTAACAATGCTGGGAATGCTAGCAGTACAGCACATCCAGGATTGGGCTCAACTGGATTGAAGCCTAGCAGGGAATATGATGACACAAATTTGTACATTGGGCACTTGCCACCTACTCTTGATGATGATGGTTTGATAAGGTTGTTTTCACGTTTCGGTAATATTGTGATGTGCAAAGTTATTAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCGGATGGCTAATAGTGCAATTGCAAGCATGAATGGTTTTTCCCTCGAGGGTCGAACCATTGCTGTCAGAGTTGCTGGCAAGCCTCAACAGCCTGTTGTGTCTCCTGGACCACCAGCTTCGGCAATGTCACCATACCCGGTCTCAAGCCAGCCTGTTGGTGCTTATCCATCCCAGCAATTTACCCCAGGTGGCCCTCTTTGGACTGTACCATCTACTAGCTATGCAGGAACTCCAGTTCCTTGGGGAACCCCTGTTCCTCCTCCATATTCTCCTTATGCTTCTCCAGCTCCCCCTCCTCCAGGTTCAACCATGTACCCTCCTCCCACGCCGGGTCAACCTGTGGCTGCTTACAGTGCACAATACCCTCCTCCTCCTGGTGCATCACGTCAGCCAGTGACGTTAAGTGAAGCACAACAGAGTTATACTCCTCCAGGGGTACAATCTGAAAGATCTACCCAATCTGCACCAACTAATATATACACAATGCCAACAAATGGCCAACATGCTTATCCTACATCTGCATGTGGCTACCCATCTTACTACAATGCAGTTCCACCACCTCCTGCCCCCGGACCTGTACCTGGTTCAACTGCATACCAATCCCAGAGCATTGGTAATGTGCCATGGGCCACAAGTACTCCTGTTCTTCCTCCTAATTCTTCTGCAGATAAAGCAACTCACGGTGCAGATGCAGAGTATGAGAAGTTCATGGCGGGTATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

760

Amino Acids

82.03

Weight (kDa)

6.32

Isoelectric Point (pI)

63.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	118 - 225	1.3e-24	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	239 - 321	1.2e-23	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	470 - 539	4.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	1601
AccB1I	GGYRCC	3 cut(s)	143, 236, 1074
AccB7I	CCANNNNNTGG	1 cut(s)	2051
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	3 cut(s)	361, 589, 1016
AclI	AACGTT	1 cut(s)	1109
AclWI	GGATC	2 cut(s)	63, 422
AcoI	YGGCCR	1 cut(s)	2053
AcsI	RAATTY	4 cut(s)	150, 422, 435, 1405
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	237, 336
AflII	CTTAAG	1 cut(s)	1004
AgeI	ACCGGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	1943
AjnI	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AloI	GAACNNNNNNTCC	8 cut(s)	1776, 1777, 1794, 1795, 1808, 1809, 1826, 1827
Alw21I	GWGCWC	1 cut(s)	1915
Alw26I	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
Alw44I	GTGCAC	1 cut(s)	1911
AlwI	GGATC	2 cut(s)	63, 422
Ama87I	CYCGRG	3 cut(s)	167, 754, 1601
AoxI	GGCC	7 cut(s)	270, 366, 674, 751, 1747, 2053, 2184
ApaLI	GTGCAC	1 cut(s)	1911
ApeKI	GCWGC	8 cut(s)	279, 397, 955, 958, 961, 997, 1000, 1901
ApoI	RAATTY	4 cut(s)	150, 422, 435, 1405
ArsI	GACNNNNNNTTYG	2 cut(s)	1258, 1290
AseI	ATTAAT	1 cut(s)	567
AsiGI	ACCGGT	1 cut(s)	202
AspLEI	GCGC	4 cut(s)	125, 239, 589, 1289
AspS9I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
AsuC2I	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
AsuHPI	GGTGA	4 cut(s)	400, 1076, 1154, 1677
AsuII	TTCGAA	1 cut(s)	860
AsuNHI	GCTAGC	1 cut(s)	1337
AvaI	CYCGRG	3 cut(s)	167, 754, 1601
AvaII	GGWCC	4 cut(s)	304, 1504, 1664, 2129
BaeGI	GKGCMC	3 cut(s)	1077, 1422, 1915
BalI	TGGCCA	1 cut(s)	2055
BanI	GGYRCC	3 cut(s)	143, 236, 1074
BanII	GRGCYC	1 cut(s)	1367
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	1915
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	8 cut(s)	291, 384, 942, 945, 973, 1009, 1012, 1888
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BcnI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
BcoDI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BfaI	CTAG	4 cut(s)	134, 1338, 1383, 1773
BfmI	CTRYAG	2 cut(s)	959, 2220
BfoI	RGCGCY	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	1004
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	2006
BmcAI	AGTACT	1 cut(s)	2194
Bme18I	GGWCC	4 cut(s)	304, 1504, 1664, 2129
BmeT110I	CYCGRG	3 cut(s)	167, 754, 1601
BmgBI	CACGTC	1 cut(s)	1943
BmgT120I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
BmrI	ACTGGG	2 cut(s)	948, 1166
BmsI	GCATC	5 cut(s)	466, 919, 1162, 1946, 2236
BmtI	GCTAGC	1 cut(s)	1341
BmuI	ACTGGG	2 cut(s)	948, 1166
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	4 cut(s)	257, 289, 1966, 1998
BpmI	CTGGAG	5 cut(s)	259, 1773, 1824, 1839, 1971
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	860
BpuEI	CTTGAG	2 cut(s)	482, 1684
BpuMI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
BsaHI	GRCGYC	2 cut(s)	237, 336
BsaI	GGTCTC	2 cut(s)	528, 1702
BsaWI	WCCGGW	4 cut(s)	52, 140, 202, 485
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 2179, 2209
Bse118I	RCCGGY	4 cut(s)	202, 297, 385, 538
Bse1I	ACTGG	7 cut(s)	796, 943, 1172, 1375, 1519, 1790, 1949
Bse3DI	GCAATG	2 cut(s)	1614, 1686
BseBI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BseGI	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BseMI	GCAATG	2 cut(s)	1614, 1686
BseMII	CTCAG	4 cut(s)	171, 323, 641, 1218
BseNI	ACTGG	7 cut(s)	796, 943, 1172, 1375, 1519, 1790, 1949
BseSI	GKGCMC	3 cut(s)	1077, 1422, 1915
BseXI	GCAGC	8 cut(s)	291, 384, 942, 945, 973, 1009, 1012, 1888
BseYI	CCCAGC	2 cut(s)	1328, 1728
BsgI	GTGCAG	2 cut(s)	2004, 2262
Bsh1236I	CGCG	3 cut(s)	361, 589, 1016
BshFI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BshNI	GGYRCC	3 cut(s)	143, 236, 1074
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	1915
BsiHKCI	CYCGRG	3 cut(s)	167, 754, 1601
BslFI	GGGAC	4 cut(s)	317, 753, 1042, 1252
BsmAI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	4 cut(s)	317, 753, 1042, 1252
BsmI	GAATGC	2 cut(s)	1090, 1339
BsnI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
Bso31I	GGTCTC	2 cut(s)	528, 1702
BsoBI	CYCGRG	3 cut(s)	167, 754, 1601
Bsp119I	TTCGAA	1 cut(s)	860
Bsp1286I	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
Bsp1407I	TGTACA	2 cut(s)	699, 1410
Bsp143I	GATC	4 cut(s)	55, 427, 502, 2006
Bsp19I	CCATGG	1 cut(s)	2180
BspANI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BspCNI	CTCAG	4 cut(s)	172, 322, 640, 1219
BspFNI	CGCG	3 cut(s)	361, 589, 1016
BspMAI	CTGCAG	2 cut(s)	963, 2224
BspOI	GCTAGC	1 cut(s)	1341
BspPI	GGATC	2 cut(s)	63, 422
BspT104I	TTCGAA	1 cut(s)	860
BspT107I	GGYRCC	3 cut(s)	143, 236, 1074
BspTI	CTTAAG	1 cut(s)	1004
BspTNI	GGTCTC	2 cut(s)	528, 1702
BsrBI	CCGCTC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	1614, 1686
BsrFI	RCCGGY	4 cut(s)	202, 297, 385, 538
BsrGI	TGTACA	2 cut(s)	699, 1410
BsrI	ACTGG	7 cut(s)	796, 943, 1172, 1375, 1519, 1790, 1949
BssAI	RCCGGY	4 cut(s)	202, 297, 385, 538
BssMI	GATC	4 cut(s)	55, 427, 502, 2006
BssNI	GRCGYC	2 cut(s)	237, 336
BssT1I	CCWWGG	3 cut(s)	1313, 1796, 2180
Bst2UI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
Bst4CI	ACNGT	3 cut(s)	1762, 1910, 2240
Bst6I	CTCTTC	4 cut(s)	120, 767, 845, 1035
BstACI	GRCGYC	2 cut(s)	237, 336
BstAFI	CTTAAG	1 cut(s)	1004
BstAUI	TGTACA	2 cut(s)	699, 1410
BstBI	TTCGAA	1 cut(s)	860
BstC8I	GCNNGC	6 cut(s)	1291, 1339, 1582, 1633, 1637, 1706
BstDEI	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
BstDSI	CCRYGG	1 cut(s)	2180
BstENI	CCTNNNNNAGG	1 cut(s)	1854
BstF5I	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BstFNI	CGCG	3 cut(s)	361, 589, 1016
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	4 cut(s)	125, 239, 589, 1289
BstKTI	GATC	4 cut(s)	58, 430, 505, 2009
BstMAI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BstMBI	GATC	4 cut(s)	55, 427, 502, 2006
BstNI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BstNSI	RCATGY	3 cut(s)	896, 2063, 2082
BstSFI	CTRYAG	2 cut(s)	959, 2220
BstSLI	GKGCMC	3 cut(s)	1077, 1422, 1915
BstUI	CGCG	3 cut(s)	361, 589, 1016
BstV1I	GCAGC	8 cut(s)	291, 384, 942, 945, 973, 1009, 1012, 1888
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	2006
BstXI	CCANNNNNNTGG	3 cut(s)	1712, 1797, 2168
BstYI	RGATCY	1 cut(s)	2006
BsuRI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BtgI	CCRYGG	1 cut(s)	2180
BtgZI	GCGATG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	1943
BtsCI	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BtsIMutI	CAGTG	5 cut(s)	125, 831, 1179, 1915, 1956
Cac8I	GCNNGC	6 cut(s)	1291, 1339, 1582, 1633, 1637, 1706
CfoI	GCGC	4 cut(s)	125, 239, 589, 1289
Cfr10I	RCCGGY	4 cut(s)	202, 297, 385, 538
Cfr13I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	2137
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	8 cut(s)	409, 893, 1585, 1867, 2060, 2079, 2181, 2266
DdeI	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	4 cut(s)	57, 429, 504, 2008
DpnII	GATC	4 cut(s)	55, 427, 502, 2006
EaeI	YGGCCR	1 cut(s)	2053
Eam1104I	CTCTTC	4 cut(s)	120, 767, 845, 1035
EarI	CTCTTC	4 cut(s)	120, 767, 845, 1035
EciI	GGCGGA	2 cut(s)	93, 273
Eco130I	CCWWGG	3 cut(s)	1313, 1796, 2180
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	1367
Eco31I	GGTCTC	2 cut(s)	528, 1702
Eco47I	GGWCC	4 cut(s)	304, 1504, 1664, 2129
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	3 cut(s)	167, 754, 1601
EcoNI	CCTNNNNNAGG	1 cut(s)	1854
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	2 cut(s)	150, 422
EcoRII	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
EcoT14I	CCWWGG	3 cut(s)	1313, 1796, 2180
EcoT38I	GRGCYC	1 cut(s)	1367
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	3 cut(s)	1313, 1796, 2180
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	8 cut(s)	412, 896, 1588, 1870, 2063, 2082, 2184, 2269
FaqI	GGGAC	4 cut(s)	317, 753, 1042, 1252
FatI	CATG	8 cut(s)	408, 892, 1584, 1866, 2059, 2078, 2180, 2265
FauI	CCCGC	3 cut(s)	72, 85, 2263
FokI	GGATG	9 cut(s)	487, 790, 955, 983, 1140, 1214, 1338, 1573, 1711
FriOI	GRGCYC	1 cut(s)	1367
FspBI	CTAG	4 cut(s)	134, 1338, 1383, 1773
GlaI	GCGC	4 cut(s)	124, 238, 588, 1288
GsaI	CCCAGC	2 cut(s)	1332, 1732
GsuI	CTGGAG	5 cut(s)	259, 1773, 1824, 1839, 1971
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	4 cut(s)	125, 239, 589, 1289
Hin1I	GRCGYC	2 cut(s)	237, 336
Hin1II	CATG	8 cut(s)	412, 896, 1588, 1870, 2063, 2082, 2184, 2269
Hin6I	GCGC	4 cut(s)	123, 237, 587, 1287
HinP1I	GCGC	4 cut(s)	123, 237, 587, 1287
HincII	GTYRAC	2 cut(s)	1321, 1892
HindII	GTYRAC	2 cut(s)	1321, 1892
HindIII	AAGCTT	2 cut(s)	441, 683
HinfI	GANTC	5 cut(s)	163, 191, 391, 857, 1250
HpaI	GTTAAC	1 cut(s)	1321
HphI	GGTGA	4 cut(s)	400, 1076, 1154, 1677
Hpy166II	GTNNAC	3 cut(s)	1321, 1892, 1913
Hpy188I	TCNGA	8 cut(s)	14, 88, 630, 877, 1083, 1560, 1625, 2002
Hpy188III	TCNNGA	6 cut(s)	59, 167, 431, 461, 1098, 1436
Hpy8I	GTNNAC	3 cut(s)	1321, 1892, 1913
HpyAV	CCTTC	4 cut(s)	117, 506, 778, 1171
HpyCH4III	ACNGT	3 cut(s)	1762, 1910, 2240
HpyCH4IV	ACGT	4 cut(s)	1109, 1468, 1942, 1955
HpyF3I	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
HpySE526I	ACGT	4 cut(s)	1109, 1468, 1942, 1955
Hsp92I	GRCGYC	2 cut(s)	237, 336
Hsp92II	CATG	8 cut(s)	412, 896, 1588, 1870, 2063, 2082, 2184, 2269
HspAI	GCGC	4 cut(s)	123, 237, 587, 1287
KasI	GGCGCC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	1321
Kzo9I	GATC	4 cut(s)	55, 427, 502, 2006
LmnI	GCTCC	4 cut(s)	294, 376, 535, 1849
Lsp1109I	GCAGC	8 cut(s)	291, 384, 942, 945, 973, 1009, 1012, 1888
LweI	GCATC	5 cut(s)	466, 919, 1162, 1946, 2236
MabI	ACCWGGT	1 cut(s)	2137
MaeI	CTAG	4 cut(s)	134, 1338, 1383, 1773
MaeII	ACGT	4 cut(s)	1109, 1468, 1942, 1955
MaeIII	GTNAC	3 cut(s)	1095, 1683, 1951
MalI	GATC	4 cut(s)	57, 429, 504, 2008
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	4 cut(s)	55, 427, 502, 2006
MboII	GAAGA	8 cut(s)	107, 474, 784, 862, 1052, 1204, 2195, 2208
MfeI	CAATTG	1 cut(s)	1575
MflI	RGATCY	1 cut(s)	2006
MhlI	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
MlsI	TGGCCA	1 cut(s)	2055
MluCI	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
MluNI	TGGCCA	1 cut(s)	2055
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	37, 1181
Mox20I	TGGCCA	1 cut(s)	2055
MscI	TGGCCA	1 cut(s)	2055
MseI	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
MslI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
Msp20I	TGGCCA	1 cut(s)	2055
MspA1I	CMGCKG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	1004
MunI	CAATTG	1 cut(s)	1575
Mva1269I	GAATGC	2 cut(s)	1090, 1339
MvaI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
MvnI	CGCG	3 cut(s)	361, 589, 1016
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
NcoI	CCATGG	1 cut(s)	2180
NdeII	GATC	4 cut(s)	55, 427, 502, 2006
NheI	GCTAGC	1 cut(s)	1337
NlaIII	CATG	8 cut(s)	412, 896, 1588, 1870, 2063, 2082, 2184, 2269
NmuCI	GTSAC	3 cut(s)	1095, 1683, 1951
NspI	RCATGY	3 cut(s)	896, 2063, 2082
NspV	TTCGAA	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	1601
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	2 cut(s)	1090, 1339
PfeI	GAWTC	4 cut(s)	163, 391, 857, 1250
PflMI	CCANNNNNTGG	1 cut(s)	2051
PfoI	TCCNGGA	3 cut(s)	158, 1354, 1660
PinAI	ACCGGT	1 cut(s)	202
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
PspFI	CCCAGC	2 cut(s)	1328, 1728
PspGI	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
PspPI	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
PspPPI	RGGWCCY	1 cut(s)	304
PspXI	VCTCGAGB	1 cut(s)	1601
PsrI	GAACNNNNNNTAC	2 cut(s)	2246, 2278
PstI	CTGCAG	2 cut(s)	963, 2224
PsuI	RGATCY	1 cut(s)	2006
PvuII	CAGCTG	1 cut(s)	397
RseI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
SaqAI	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
Sau3AI	GATC	4 cut(s)	55, 427, 502, 2006
Sau96I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
ScaI	AGTACT	1 cut(s)	2194
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
SexAI	ACCWGGT	1 cut(s)	2137
SfaNI	GCATC	5 cut(s)	466, 919, 1162, 1946, 2236
SfcI	CTRYAG	2 cut(s)	959, 2220
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	1601
SfuI	TTCGAA	1 cut(s)	860
SinI	GGWCC	4 cut(s)	304, 1504, 1664, 2129
SlaI	CTCGAG	1 cut(s)	1601
SmiMI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
SmlI	CTYRAG	4 cut(s)	461, 1004, 1601, 1699
SmoI	CTYRAG	4 cut(s)	461, 1004, 1601, 1699
Sse9I	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
SseBI	AGGCCT	1 cut(s)	272
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	1480
SspMI	CTAG	4 cut(s)	134, 1338, 1383, 1773
StuI	AGGCCT	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	1313, 1796, 2180
TaaI	ACNGT	3 cut(s)	1762, 1910, 2240
TaiI	ACGT	4 cut(s)	1112, 1471, 1945, 1958
TaqI	TCGA	5 cut(s)	194, 426, 860, 1602, 1609
TasI	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
TatI	WGTACW	4 cut(s)	699, 1343, 1410, 2192
TauI	GCSGC	6 cut(s)	285, 288, 291, 336, 679, 935
TfiI	GAWTC	4 cut(s)	163, 391, 857, 1250
Tru1I	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
Tru9I	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
TscAI	CASTG	5 cut(s)	125, 831, 1179, 1915, 1956
TseFI	GTSAC	3 cut(s)	1095, 1683, 1951
TseI	GCWGC	8 cut(s)	279, 397, 955, 958, 961, 997, 1000, 1901
Tsp45I	GTSAC	3 cut(s)	1095, 1683, 1951
TspDTI	ATGAA	4 cut(s)	63, 397, 1601, 2254
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	5 cut(s)	125, 831, 1179, 1915, 1956
Van91I	CCANNNNNTGG	1 cut(s)	2051
Vha464I	CTTAAG	1 cut(s)	1004
VneI	GTGCAC	1 cut(s)	1911
VpaK11BI	GGWCC	4 cut(s)	304, 1504, 1664, 2129
VspI	ATTAAT	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	1854
XapI	RAATTY	4 cut(s)	150, 422, 435, 1405
XceI	RCATGY	3 cut(s)	896, 2063, 2082
XhoI	CTCGAG	1 cut(s)	1601
XspI	CTAG	4 cut(s)	134, 1338, 1383, 1773
ZrmI	AGTACT	1 cut(s)	2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.