Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Reverse (-)

30351935 .. 30357121

Gene Structure 5187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGGAACTCTCCAACCAAACCCTAATCCTCCTCCCATTGACGATGATGAACCGGATCACGACCCGCCTTATTTTCCCGCCATTTCCGAAATCCCAATCCCGCTCTCAGATTTAAAGCCTCCGCCTTCGCCTCGGCAGTGCCCTCAAACCCTAGCTTCCGGTGCCGGAATTCCCTCCCGGAGTCCCGAGACTTCTACTGAGAACGGAGACTCGACCAAACCGGCTGCTAATAGCTTCGCCAACACGCACAGTGGCTCCGACCGGGACTTCTCCGGAGGAGAGGAGGAGGCCTCCAGCAGCCGCAGCAGCGGCCGCCGCCGCAGCCGGTGGGACCCCCAGACCGAGACGGAAATCCAGAGCGGCGTCGGCGCGAGGAGGAGGAAGTCGCGGTGGGCCGATGAGGAGCCGAAGCCGGTGATTCAGCTGCCGGGGTTCATGGGAGGTATTGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCATCTTGAGATTAGTAGGATGTTGTCTTCCGGTTTGCCTTTAGATGATCGCCCGGAAGGGGATAGGTCTCCGTCGCCGGAGCCGGTGTATGATAACTTTGGAATTAGGATTAATACAAGAGAGTTTCGTGCGCGTGAGAGGTTGAACAAAGAGAGGCAGGAAATTATTACTCAGATTATTAAGAGGAACCCTACATTTAAGCCTCCGGCGGATTACAGGCCTCCCAAGCTTCACAAGAAGCTGTACATACCCGTGAAAGAGTACCCTGGTTATAATTTTATAGGACTTATCATTGGCCCGAGGGGGAATACCCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTCATTAGGGGTAGAGGGTCGGTGAAAGAGGGTAAGTCGCAACAGAAGAGGGATTCGAAGCATGACCCGTCTGAGAATGAGGACTTGCATGTTTTGGTTGAGGCTGACACGCAGGAGGCTGTTGATGCCGCAGCTGGGATGGTAGAGAAGCTGTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTAAGGAACTCGCGTTGTTGAATGGGACTATTAGGGAAGAGGAGTTTTGTAGGTTATGTGGTGAGCCCGGGCACCATCAGAATGCCTGTCCCTCACGAACTTCAATGTTTAAGAGCGATGTTCTTTGTAAGATATGTGGTGATGGTGGGCATCCAACTATTGATTGTCCAGTGAAGGGTACGAATGGGAAGAAAATGGATGATGAGTACCGGAACTTTTTGGCTGAGTTAGGTGGGACAATGCCTGAATCAGCAACTAAGCAGACTGCTACTTTGGCTCTTGGCGCAGGCAGTTCAGTAAGCAGTCCTCCTTGGGTTAACAATGCTGGGAATGCTAGCAGTACAGCACATCCAGGATTGGGCTCAACTGGATTGAAGCATAGCAGGGAATATGATGACACAAATTTGTACATTGGGCACTTGCCACCTACTCTTGATGATGATGGTTTGATCGGGTTGTTTTCACGTTTCGGTAATATCGTGATGTGCAAAGTTATTAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCAGATGGCTAATAGTGCAATTGCAAGCATGAATGGCTTTTCCCTCGAGGGTCGAACCATTGCTGTCAGAGTTGCTGGCAAGCCTCAACAGTCTGTTGTGTCTCCTGGACCACCAGCTTCGGCAATGTCACCATACCCGGTCTCAAGCCAGCCTGTTGGTGCTTATCCATCCCAGCAATTTACCCCAGGTGGCCCTCTTTGGACTGTACCATCTACTGGCTATGCAGGAACTCCAGTTCCTTGGGGACCCCCTGTTCCTCCTCCGTATTCTCCTTTTGCTTCTCCACCTCCCCTTCCTCCAGGTTCAACCATGTATCCTCCTCCCACGCCGGGTCAACCTATGGCTGCTTACAGTGCACAATACCCTCCTCCTCCTGGTGCATCACCTCAGCCAGTGAGGTTAAGTGAAGCACAACAGAGTTATCCTCCTCCAGTGGTTCAATCTGAAAGATCTACCCAATCTGCACCAACTAATATATACACAATGCCAACATATGGCCAACATGCTTATTCTACATCTGCATATGGTTACCCATCTTACTACAATGCAGTTCCACCACCTCCTGCCCCCGGACCTGTACCTGGTTCAACTGCATACCAATCCCAGAGCATTGGTAATGTGCCATGGGCCACAAGTACTCCTGTTCTTCCTCCTAATTCTTCAGCAGATAAAGCAACGCACGGTGCAGATGCAGAGTATGAGAAGTTCATGGTGGAGATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

769

Amino Acids

83.05

Weight (kDa)

6.25

Isoelectric Point (pI)

62.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	127 - 234	1.3e-24	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	248 - 330	5.9e-25	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	479 - 548	5.7e-18	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	756
AbsI	CCTCGAGG	1 cut(s)	1628
AccB1I	GGYRCC	2 cut(s)	161, 1101
AccB7I	CCANNNNNTGG	2 cut(s)	1799, 2078
AccBSI	CCGCTC	2 cut(s)	103, 360
AccII	CGCG	4 cut(s)	371, 388, 616, 1043
AccIII	TCCGGA	1 cut(s)	272
AclWI	GGATC	2 cut(s)	63, 449
AcoI	YGGCCR	2 cut(s)	310, 2080
AcsI	RAATTY	4 cut(s)	168, 449, 462, 1432
AcuI	CTGAAG	1 cut(s)	2229
AcyI	GRCGYC	1 cut(s)	363
AflII	CTTAAG	1 cut(s)	1031
AjnI	CCWGG	7 cut(s)	748, 1381, 1687, 1768, 1882, 1957, 2164
AloI	GAACNNNNNNTCC	6 cut(s)	1803, 1804, 1821, 1835, 1836, 1853
Alw21I	GWGCWC	1 cut(s)	1942
Alw26I	GTCTC	7 cut(s)	182, 201, 338, 555, 809, 1689, 1729
Alw44I	GTGCAC	1 cut(s)	1938
AlwI	GGATC	2 cut(s)	63, 449
Ama87I	CYCGRG	4 cut(s)	185, 781, 1097, 1628
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	8 cut(s)	288, 310, 393, 701, 778, 1774, 2080, 2211
ApaLI	GTGCAC	1 cut(s)	1938
ApoI	RAATTY	4 cut(s)	168, 449, 462, 1432
ArsI	GACNNNNNNTTYG	2 cut(s)	1285, 1317
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	3 cut(s)	371, 616, 1316
AspS9I	GGNCC	9 cut(s)	331, 393, 779, 1531, 1691, 1775, 1829, 2156, 2211
AsuHPI	GGTGA	6 cut(s)	427, 865, 1103, 1181, 1704, 1959
AsuII	TTCGAA	1 cut(s)	887
AsuNHI	GCTAGC	1 cut(s)	1364
AvaI	CYCGRG	4 cut(s)	185, 781, 1097, 1628
AvaII	GGWCC	5 cut(s)	331, 1531, 1691, 1829, 2156
BaeGI	GKGCMC	4 cut(s)	143, 1104, 1449, 1942
BalI	TGGCCA	1 cut(s)	2082
BanI	GGYRCC	2 cut(s)	161, 1101
BanII	GRGCYC	2 cut(s)	1098, 1394
BbsI	GAAGAC	1 cut(s)	501
Bbv12I	GWGCWC	1 cut(s)	1942
BbvCI	CCTCAGC	1 cut(s)	1971
BccI	CCATC	9 cut(s)	799, 964, 1113, 1166, 1466, 1582, 1759, 1801, 2125
BciT130I	CCWGG	7 cut(s)	750, 1383, 1689, 1770, 1884, 1959, 2166
BciVI	GTATCC	1 cut(s)	1908
BcoDI	GTCTC	7 cut(s)	182, 201, 338, 555, 809, 1689, 1729
BfaI	CTAG	2 cut(s)	152, 1365
BfrI	CTTAAG	1 cut(s)	1031
BfuI	GTATCC	1 cut(s)	1908
BglII	AGATCT	1 cut(s)	2033
BmcAI	AGTACT	1 cut(s)	2221
Bme18I	GGWCC	5 cut(s)	331, 1531, 1691, 1829, 2156
BmeT110I	CYCGRG	4 cut(s)	185, 781, 1097, 1628
BmgT120I	GGNCC	9 cut(s)	331, 393, 779, 1531, 1691, 1775, 1829, 2156, 2211
BmsI	GCATC	5 cut(s)	493, 946, 1189, 1973, 2263
BmtI	GCTAGC	1 cut(s)	1368
BpiI	GAAGAC	1 cut(s)	501
BplI	GAGNNNNNCTC	4 cut(s)	275, 307, 1993, 2025
BpmI	CTGGAG	4 cut(s)	277, 1800, 1866, 1998
Bpu10I	CCTNAGC	1 cut(s)	1971
Bpu14I	TTCGAA	1 cut(s)	887
BpuEI	CTTGAG	2 cut(s)	509, 1711
BsaHI	GRCGYC	1 cut(s)	363
BsaI	GGTCTC	2 cut(s)	555, 1729
BsaWI	WCCGGW	5 cut(s)	52, 158, 272, 512, 1239
BsaXI	ACNNNNNCTCC	6 cut(s)	239, 269, 554, 584, 2206, 2236
Bse118I	RCCGGY	4 cut(s)	220, 324, 412, 565
Bse1I	ACTGG	8 cut(s)	823, 1199, 1402, 1546, 1804, 1817, 1976, 2015
Bse3DI	GCAATG	2 cut(s)	1641, 1713
BseAI	TCCGGA	1 cut(s)	272
BseBI	CCWGG	7 cut(s)	750, 1383, 1689, 1770, 1884, 1959, 2166
BseGI	GGATG	8 cut(s)	507, 810, 975, 1003, 1180, 1234, 1378, 1751
BseMI	GCAATG	2 cut(s)	1641, 1713
BseMII	CTCAG	6 cut(s)	120, 189, 668, 894, 1245, 1985
BseNI	ACTGG	8 cut(s)	823, 1199, 1402, 1546, 1804, 1817, 1976, 2015
BseSI	GKGCMC	4 cut(s)	143, 1104, 1449, 1942
BseX3I	CGGCCG	1 cut(s)	310
BseYI	CCCAGC	3 cut(s)	965, 1355, 1755
BsgI	GTGCAG	2 cut(s)	2031, 2289
Bsh1236I	CGCG	4 cut(s)	371, 388, 616, 1043
Bsh1285I	CGRYCG	2 cut(s)	262, 313
BshFI	GGCC	8 cut(s)	290, 312, 395, 703, 780, 1776, 2082, 2213
BshNI	GGYRCC	2 cut(s)	161, 1101
BsiEI	CGRYCG	2 cut(s)	262, 313
BsiHKAI	GWGCWC	1 cut(s)	1942
BsiHKCI	CYCGRG	4 cut(s)	185, 781, 1097, 1628
BslFI	GGGAC	7 cut(s)	168, 278, 344, 1069, 1104, 1279, 1842
BsmAI	GTCTC	7 cut(s)	182, 201, 338, 555, 809, 1689, 1729
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	7 cut(s)	168, 278, 344, 1069, 1104, 1279, 1842
BsmI	GAATGC	2 cut(s)	1117, 1366
BsnI	GGCC	8 cut(s)	290, 312, 395, 703, 780, 1776, 2082, 2213
Bso31I	GGTCTC	2 cut(s)	555, 1729
BsoBI	CYCGRG	4 cut(s)	185, 781, 1097, 1628
Bsp119I	TTCGAA	1 cut(s)	887
Bsp1286I	GDGCHC	6 cut(s)	143, 1098, 1104, 1394, 1449, 1942
Bsp13I	TCCGGA	1 cut(s)	272
Bsp1407I	TGTACA	2 cut(s)	726, 1437
Bsp143I	GATC	5 cut(s)	55, 454, 529, 1479, 2033
Bsp19I	CCATGG	1 cut(s)	2207
BspANI	GGCC	8 cut(s)	290, 312, 395, 703, 780, 1776, 2082, 2213
BspCNI	CTCAG	6 cut(s)	119, 190, 667, 895, 1246, 1984
BspEI	TCCGGA	1 cut(s)	272
BspFNI	CGCG	4 cut(s)	371, 388, 616, 1043
BspOI	GCTAGC	1 cut(s)	1368
BspPI	GGATC	2 cut(s)	63, 449
BspT104I	TTCGAA	1 cut(s)	887
BspT107I	GGYRCC	2 cut(s)	161, 1101
BspTI	CTTAAG	1 cut(s)	1031
BspTNI	GGTCTC	2 cut(s)	555, 1729
BsrBI	CCGCTC	2 cut(s)	103, 360
BsrDI	GCAATG	2 cut(s)	1641, 1713
BsrFI	RCCGGY	4 cut(s)	220, 324, 412, 565
BsrGI	TGTACA	2 cut(s)	726, 1437
BsrI	ACTGG	8 cut(s)	823, 1199, 1402, 1546, 1804, 1817, 1976, 2015
BssAI	RCCGGY	4 cut(s)	220, 324, 412, 565
BssMI	GATC	5 cut(s)	55, 454, 529, 1479, 2033
BssNI	GRCGYC	1 cut(s)	363
BssT1I	CCWWGG	3 cut(s)	1340, 1823, 2207
Bst2UI	CCWGG	7 cut(s)	750, 1383, 1689, 1770, 1884, 1959, 2166
Bst4CI	ACNGT	5 cut(s)	251, 1674, 1789, 1937, 2267
Bst6I	CTCTTC	3 cut(s)	794, 872, 1062
BstACI	GRCGYC	1 cut(s)	363
BstAFI	CTTAAG	1 cut(s)	1031
BstAUI	TGTACA	2 cut(s)	726, 1437
BstBI	TTCGAA	1 cut(s)	887
BstC8I	GCNNGC	6 cut(s)	1318, 1366, 1609, 1660, 1664, 1733
BstDEI	CTNAG	8 cut(s)	106, 198, 654, 825, 903, 1254, 1287, 1971
BstDSI	CCRYGG	1 cut(s)	2207
BstEII	GGTNACC	1 cut(s)	2111
BstF5I	GGATG	8 cut(s)	507, 810, 975, 1003, 1180, 1234, 1378, 1751
BstFNI	CGCG	4 cut(s)	371, 388, 616, 1043
BstHHI	GCGC	3 cut(s)	371, 616, 1316
BstKTI	GATC	5 cut(s)	58, 457, 532, 1482, 2036
BstMAI	GTCTC	7 cut(s)	182, 201, 338, 555, 809, 1689, 1729
BstMBI	GATC	5 cut(s)	55, 454, 529, 1479, 2033
BstMCI	CGRYCG	2 cut(s)	262, 313
BstNI	CCWGG	7 cut(s)	750, 1383, 1689, 1770, 1884, 1959, 2166
BstNSI	RCATGY	2 cut(s)	923, 2090
BstPI	GGTNACC	1 cut(s)	2111
BstSLI	GKGCMC	4 cut(s)	143, 1104, 1449, 1942
BstUI	CGCG	4 cut(s)	371, 388, 616, 1043
BstV2I	GAAGAC	1 cut(s)	501
BstX2I	RGATCY	1 cut(s)	2033
BstXI	CCANNNNNNTGG	3 cut(s)	1739, 1824, 2195
BstYI	RGATCY	1 cut(s)	2033
BstZI	CGGCCG	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	1908
BsuRI	GGCC	8 cut(s)	290, 312, 395, 703, 780, 1776, 2082, 2213
BtgI	CCRYGG	1 cut(s)	2207
BtgZI	GCGATG	1 cut(s)	1161
BtsCI	GGATG	8 cut(s)	507, 810, 975, 1003, 1180, 1234, 1378, 1751
BtsI	GCAGTG	1 cut(s)	143
BtsIMutI	CAGTG	6 cut(s)	143, 256, 1206, 1942, 1983, 2022
Cac8I	GCNNGC	6 cut(s)	1318, 1366, 1609, 1660, 1664, 1733
CciNI	GCGGCCGC	1 cut(s)	310
CfoI	GCGC	3 cut(s)	371, 616, 1316
Cfr10I	RCCGGY	4 cut(s)	220, 324, 412, 565
Cfr13I	GGNCC	9 cut(s)	331, 393, 779, 1531, 1691, 1775, 1829, 2156, 2211
Cfr9I	CCCGGG	1 cut(s)	1097
CseI	GACGC	1 cut(s)	352
CsiI	ACCWGGT	1 cut(s)	2164
CviAII	CATG	8 cut(s)	436, 893, 920, 1612, 1894, 2087, 2208, 2293
DdeI	CTNAG	8 cut(s)	106, 198, 654, 825, 903, 1254, 1287, 1971
DpnI	GATC	5 cut(s)	57, 456, 531, 1481, 2035
DpnII	GATC	5 cut(s)	55, 454, 529, 1479, 2033
DraI	TTTAAA	1 cut(s)	114
EaeI	YGGCCR	2 cut(s)	310, 2080
EagI	CGGCCG	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	794, 872, 1062
EarI	CTCTTC	3 cut(s)	794, 872, 1062
EciI	GGCGGA	2 cut(s)	111, 707
EclXI	CGGCCG	1 cut(s)	310
Eco130I	CCWWGG	3 cut(s)	1340, 1823, 2207
Eco147I	AGGCCT	2 cut(s)	290, 703
Eco24I	GRGCYC	2 cut(s)	1098, 1394
Eco31I	GGTCTC	2 cut(s)	555, 1729
Eco47I	GGWCC	5 cut(s)	331, 1531, 1691, 1829, 2156
Eco52I	CGGCCG	1 cut(s)	310
Eco57I	CTGAAG	1 cut(s)	2229
Eco88I	CYCGRG	4 cut(s)	185, 781, 1097, 1628
Eco91I	GGTNACC	1 cut(s)	2111
EcoO109I	RGGNCCY	2 cut(s)	331, 1829
EcoO65I	GGTNACC	1 cut(s)	2111
EcoRI	GAATTC	2 cut(s)	168, 449
EcoRII	CCWGG	7 cut(s)	748, 1381, 1687, 1768, 1882, 1957, 2164
EcoT14I	CCWWGG	3 cut(s)	1340, 1823, 2207
EcoT38I	GRGCYC	2 cut(s)	1098, 1394
ErhI	CCWWGG	3 cut(s)	1340, 1823, 2207
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	8 cut(s)	439, 896, 923, 1615, 1897, 2090, 2211, 2296
FaqI	GGGAC	7 cut(s)	168, 278, 344, 1069, 1104, 1279, 1842
FatI	CATG	8 cut(s)	435, 892, 919, 1611, 1893, 2086, 2207, 2292
FauI	CCCGC	3 cut(s)	72, 85, 108
FauNDI	CATATG	2 cut(s)	2077, 2107
FokI	GGATG	8 cut(s)	514, 817, 982, 1010, 1167, 1241, 1365, 1738
FriOI	GRGCYC	2 cut(s)	1098, 1394
FspBI	CTAG	2 cut(s)	152, 1365
GlaI	GCGC	3 cut(s)	370, 615, 1315
GsaI	CCCAGC	3 cut(s)	969, 1359, 1759
GsuI	CTGGAG	4 cut(s)	277, 1800, 1866, 1998
HaeIII	GGCC	8 cut(s)	290, 312, 395, 703, 780, 1776, 2082, 2213
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	3 cut(s)	371, 616, 1316
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	8 cut(s)	439, 896, 923, 1615, 1897, 2090, 2211, 2296
Hin6I	GCGC	3 cut(s)	369, 614, 1314
HinP1I	GCGC	3 cut(s)	369, 614, 1314
HincII	GTYRAC	2 cut(s)	1348, 1919
HindII	GTYRAC	2 cut(s)	1348, 1919
HindIII	AAGCTT	2 cut(s)	468, 710
HinfI	GANTC	5 cut(s)	181, 209, 418, 884, 1277
HpaI	GTTAAC	1 cut(s)	1348
HphI	GGTGA	6 cut(s)	427, 865, 1103, 1181, 1704, 1959
Hpy166II	GTNNAC	3 cut(s)	1348, 1919, 1940
Hpy188I	TCNGA	9 cut(s)	88, 109, 259, 657, 904, 1110, 1587, 1652, 2029
Hpy188III	TCNNGA	9 cut(s)	59, 185, 273, 355, 458, 488, 1125, 1463, 1510
Hpy8I	GTNNAC	3 cut(s)	1348, 1919, 1940
Hpy99I	CGWCG	2 cut(s)	368, 559
HpyAV	CCTTC	5 cut(s)	135, 533, 805, 1198, 1886
HpyCH4III	ACNGT	5 cut(s)	251, 1674, 1789, 1937, 2267
HpyCH4IV	ACGT	1 cut(s)	1495
HpyF3I	CTNAG	8 cut(s)	106, 198, 654, 825, 903, 1254, 1287, 1971
HpySE526I	ACGT	1 cut(s)	1495
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	8 cut(s)	439, 896, 923, 1615, 1897, 2090, 2211, 2296
HspAI	GCGC	3 cut(s)	369, 614, 1314
KflI	GGGWCCC	2 cut(s)	331, 1829
Kpn2I	TCCGGA	1 cut(s)	272
KspAI	GTTAAC	1 cut(s)	1348
Kzo9I	GATC	5 cut(s)	55, 454, 529, 1479, 2033
LmnI	GCTCC	3 cut(s)	260, 403, 562
LweI	GCATC	5 cut(s)	493, 946, 1189, 1973, 2263
MabI	ACCWGGT	1 cut(s)	2164
MaeI	CTAG	2 cut(s)	152, 1365
MaeII	ACGT	1 cut(s)	1495
MaeIII	GTNAC	2 cut(s)	1710, 2111
MalI	GATC	5 cut(s)	57, 456, 531, 1481, 2035
MbiI	CCGCTC	2 cut(s)	103, 360
MboI	GATC	5 cut(s)	55, 454, 529, 1479, 2033
MboII	GAAGA	7 cut(s)	501, 811, 889, 1079, 1231, 2222, 2235
MfeI	CAATTG	1 cut(s)	1602
MflI	RGATCY	1 cut(s)	2033
MhlI	GDGCHC	6 cut(s)	143, 1098, 1104, 1394, 1449, 1942
MlsI	TGGCCA	1 cut(s)	2082
MluNI	TGGCCA	1 cut(s)	2082
MlyI	GAGTC	2 cut(s)	190, 203
MmeI	TCCRAC	3 cut(s)	37, 282, 1208
Mox20I	TGGCCA	1 cut(s)	2082
MroI	TCCGGA	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	2082
MseI	TTAA	9 cut(s)	113, 594, 663, 681, 1032, 1140, 1347, 1527, 1985
MslI	CAYNNNNRTG	2 cut(s)	734, 1110
Msp20I	TGGCCA	1 cut(s)	2082
MspA1I	CMGCKG	3 cut(s)	309, 424, 965
MspCI	CTTAAG	1 cut(s)	1031
MunI	CAATTG	1 cut(s)	1602
Mva1269I	GAATGC	2 cut(s)	1117, 1366
MvaI	CCWGG	7 cut(s)	750, 1383, 1689, 1770, 1884, 1959, 2166
MvnI	CGCG	4 cut(s)	371, 388, 616, 1043
NcoI	CCATGG	1 cut(s)	2207
NdeI	CATATG	2 cut(s)	2077, 2107
NdeII	GATC	5 cut(s)	55, 454, 529, 1479, 2033
NheI	GCTAGC	1 cut(s)	1364
NlaIII	CATG	8 cut(s)	439, 896, 923, 1615, 1897, 2090, 2211, 2296
NmeAIII	GCCGAG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	1710
NotI	GCGGCCGC	1 cut(s)	310
NspI	RCATGY	2 cut(s)	923, 2090
NspV	TTCGAA	1 cut(s)	887
PaeR7I	CTCGAG	1 cut(s)	1628
PceI	AGGCCT	2 cut(s)	290, 703
PcsI	WCGNNNNNNNCGW	1 cut(s)	1506
PctI	GAATGC	2 cut(s)	1117, 1366
PfeI	GAWTC	3 cut(s)	418, 884, 1277
PflMI	CCANNNNNTGG	2 cut(s)	1799, 2078
PfoI	TCCNGGA	3 cut(s)	176, 1381, 1687
PleI	GAGTC	2 cut(s)	189, 203
PpsI	GAGTC	2 cut(s)	189, 203
PpuMI	RGGWCCY	2 cut(s)	331, 1829
PshBI	ATTAAT	1 cut(s)	594
PsiI	TTATAA	1 cut(s)	756
Psp5II	RGGWCCY	2 cut(s)	331, 1829
Psp6I	CCWGG	7 cut(s)	748, 1381, 1687, 1768, 1882, 1957, 2164
PspEI	GGTNACC	1 cut(s)	2111
PspFI	CCCAGC	3 cut(s)	965, 1355, 1755
PspGI	CCWGG	7 cut(s)	748, 1381, 1687, 1768, 1882, 1957, 2164
PspPI	GGNCC	9 cut(s)	331, 393, 779, 1531, 1691, 1775, 1829, 2156, 2211
PspPPI	RGGWCCY	2 cut(s)	331, 1829
PspXI	VCTCGAGB	1 cut(s)	1628
PsrI	GAACNNNNNNTAC	2 cut(s)	2273, 2305
PsuI	RGATCY	1 cut(s)	2033
PvuII	CAGCTG	2 cut(s)	424, 965
RseI	CAYNNNNRTG	2 cut(s)	734, 1110
SaqAI	TTAA	9 cut(s)	113, 594, 663, 681, 1032, 1140, 1347, 1527, 1985
Sau3AI	GATC	5 cut(s)	55, 454, 529, 1479, 2033
Sau96I	GGNCC	9 cut(s)	331, 393, 779, 1531, 1691, 1775, 1829, 2156, 2211
ScaI	AGTACT	1 cut(s)	2221
SchI	GAGTC	2 cut(s)	190, 203
SduI	GDGCHC	6 cut(s)	143, 1098, 1104, 1394, 1449, 1942
SexAI	ACCWGGT	1 cut(s)	2164
SfaNI	GCATC	5 cut(s)	493, 946, 1189, 1973, 2263
Sfr274I	CTCGAG	1 cut(s)	1628
SfuI	TTCGAA	1 cut(s)	887
SinI	GGWCC	5 cut(s)	331, 1531, 1691, 1829, 2156
SlaI	CTCGAG	1 cut(s)	1628
SmaI	CCCGGG	1 cut(s)	1099
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1110
SmlI	CTYRAG	4 cut(s)	488, 1031, 1628, 1726
SmoI	CTYRAG	4 cut(s)	488, 1031, 1628, 1726
SrfI	GCCCGGGC	1 cut(s)	1099
SseBI	AGGCCT	2 cut(s)	290, 703
SspMI	CTAG	2 cut(s)	152, 1365
StuI	AGGCCT	2 cut(s)	290, 703
StyI	CCWWGG	3 cut(s)	1340, 1823, 2207
TaaI	ACNGT	5 cut(s)	251, 1674, 1789, 1937, 2267
TaiI	ACGT	1 cut(s)	1498
TaqI	TCGA	5 cut(s)	212, 453, 887, 1629, 1636
TaqII	GACCGA	1 cut(s)	356
TatI	WGTACW	4 cut(s)	726, 1370, 1437, 2219
TauI	GCSGC	7 cut(s)	303, 312, 315, 318, 321, 363, 962
TfiI	GAWTC	3 cut(s)	418, 884, 1277
Tru1I	TTAA	9 cut(s)	113, 594, 663, 681, 1032, 1140, 1347, 1527, 1985
Tru9I	TTAA	9 cut(s)	113, 594, 663, 681, 1032, 1140, 1347, 1527, 1985
TscAI	CASTG	6 cut(s)	143, 256, 1206, 1942, 1983, 2022
TseFI	GTSAC	1 cut(s)	1710
Tsp45I	GTSAC	1 cut(s)	1710
TspDTI	ATGAA	4 cut(s)	63, 424, 1628, 2281
TspGWI	ACGGA	4 cut(s)	219, 362, 543, 1836
TspMI	CCCGGG	1 cut(s)	1097
TspRI	CASTG	6 cut(s)	143, 256, 1206, 1942, 1983, 2022
Van91I	CCANNNNNTGG	2 cut(s)	1799, 2078
Vha464I	CTTAAG	1 cut(s)	1031
VneI	GTGCAC	1 cut(s)	1938
VpaK11BI	GGWCC	5 cut(s)	331, 1531, 1691, 1829, 2156
VspI	ATTAAT	1 cut(s)	594
XapI	RAATTY	4 cut(s)	168, 449, 462, 1432
XceI	RCATGY	2 cut(s)	923, 2090
XhoI	CTCGAG	1 cut(s)	1628
XmaI	CCCGGG	1 cut(s)	1097
XspI	CTAG	2 cut(s)	152, 1365
ZrmI	AGTACT	1 cut(s)	2221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.