Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

61991940 .. 61996380

Gene Structure 4441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG390700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2295 bp

ATGGAGGCCATCCAACCAAACCCTATCGAAACCCTAGATCACCAACCTCCCTCCGAACCCCCCGCCTCCTACAACCACCACCCTCCTTCGGAATCTCTAGTCTCCGATTACAAGGACCCCTCTCCGCCCCCATCTCAAACCCTAGCCTCCCAGGCCGCCGCCGCTGTCGAGAACGGAAATTCCGCCGACGCCGGTAAGGCGGTAGCTCTGCTGATATCGGAAAACGGACTGACCAACACCCAGAGCGGGACGACCGACCGGGAAGTCTCCGGCGGAGAGGAGGAGACCACGAGCAGGCGGATCCGTCGCAGCCGGTGGGACCCGCAGCCTGAGTCGGAGAACCAGGGGGATGAATCCGGTAGCGGGAAGAGGAAGAGGAAGTCGCGGTGGGCCGCCGAGGAGCCCAAGCCGGTGGTTCAGCTGCCGGATTTCATGGGAGGTATAGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTCTCTTCGGGGTTGCCTTTGGATGACAGACCCGAAGGAGCTAGGTCTCCGTCGCCGGAGCCGGTGTATGATAACATGGGGATTAGGATTAATACTAGAGAGTTTCGAGCGCGTGAGAGGTTGAATAGAGAGAGGCAGGAGATTATTGCTCAGATTCTTAAGAGGAACCCTAACTATAAGCCTCCGGCGGATTACAGGCCGCCTAAGCTTCACAAGAAGCTTTACATTCCCATGAAGGAGTACCCTGGTTACAATTTTATTGGGCTTATTATCGGCCCAAGGGGTAATACTCAGAAGAGGATGGAGAAAGAAACTGGTGCGAAGATTGTGATTAGGGGGAAAGGGTCTGTGAAGGAGGGTAGGTTGCAACAGAAGAGGGATTTGAAGCCTGATCCATCGGAGAATGAGGACTTGCATGTTCTGGTTGAGGCTGATACACAGGATGCTCTTGATGCTGCAGCTGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTCGCGGCGTTGAATGGGACTATTAGGGATGAGGAGTATTGTAGGTTATGTGGTGAGCCTGGGCATCGTCAGTATGCATGTCCTTCACGAACCTCAACCTTTAAGAGTGATGTGCTCTGTAAGATATGTGGTGATGGTGGGCATCCTACTATCGATTGTCCAATGAAGGGTACATCTGGGAAGAAAATGGATGATGAGTATCAGAATTTTTTGGCTGAGTTAGGTGGGACAGTTCCCGAGTCAGCAACTAAGCAGACTGCTACTCTGGCTCTTGGCCCAGGGACTTCAGTAAGCAATCCTCCGTGGTCTAACAGTGGTGGGAGTGCTAGCAGTGCATCACATCCAGGGTTGGGTTTTTCTGGAATTAAGCCTACTACAAAGGAACATGACGACACAAATTTGTACATTGGATACTTGCCACCTACACTTGAGGATGATGGTTTGATCGGTATGTTTTCACAGTTCGGTGACATTGTGATGGCCAAAGTTATCAAGGACCGGGTTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCAGATGTTCAGATGGCTAATAATGCTATTGCAAGCATGAATGGCTATCGGCTTGAGGGGCGATCAATTGCTGTCAGAGTTGCTGGCAAGCCTCCCCAGCCTGTTGTGCCTCCTGGACTACCAGCTTCAGCAATGCCGTCATACCCTGTTTCCAGTCAGCCTGTTGGTGCCTATCCCTCTCAGCAGTTTTCCCCAGGTGGTCCCCTTGGGAATGCACCACCTACTAGCTATGCGGGTACTCCGGTTCCATGGGGACCTCCCGTTCCTCCTCCTTATGCTCCTTATGTCCCTCCCCCTCCTCCTGCTTCAGCAATGTTTTATCCTCCCATGAGTCAACCTATGGCTGGTTATGGTCCACGGTACCCTCCTCCCCCTGGTGCACCACCTCAGCTGCCCTCCAGTGAAGCACAGCAGAGTTACCCTCCTCCAGGAGTTCAATCTGAAAACCCTACCCAATCTTTACCAACTAGTATGTATGGGAGCTCTTTACCGGCAATGCCACCAAATGGCCAACACACTTATCCTCCTTCTTCATATGGTTACTCATCTTACTACAATGCTGTCCCACCTCCCCCTCCCTCAACTACAGACCAATCTCAGAACATTGGGAATGTGCCATGGGCCACAAGTACTCCAGCTCCCCCTCCTGCTTCTTCTGCAGAGAAAGCAACGTATGGTGCAGATGCAGAGTATGAGAAGTTCATGGCAGAGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

764

Amino Acids

82.42

Weight (kDa)

5.75

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	126 - 233	5.9e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	247 - 329	7.6e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	479 - 548	1.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	1935
AccB1I	GGYRCC	2 cut(s)	1742, 1935
AccB7I	CCANNNNNTGG	1 cut(s)	2081
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	3 cut(s)	385, 613, 1040
AclWI	GGATC	4 cut(s)	295, 308, 446, 887
AcoI	YGGCCR	2 cut(s)	1515, 2083
AcsI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
AcuI	CTGAAG	3 cut(s)	1305, 1686, 1866
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	7 cut(s)	743, 1207, 1439, 1574, 1813, 1937, 2206
AflII	CTTAAG	1 cut(s)	659
AgsI	TTSAA	7 cut(s)	464, 472, 625, 886, 1006, 1048, 2012
AhlI	ACTAGT	1 cut(s)	2042
AloI	GAACNNNNNNTCC	4 cut(s)	164, 196, 1821, 1853
Alw21I	GWGCWC	3 cut(s)	1152, 1957, 2060
Alw26I	GTCTC	5 cut(s)	106, 271, 278, 552, 2279
Alw44I	GTGCAC	1 cut(s)	1953
AlwI	GGATC	4 cut(s)	295, 308, 446, 887
Ama87I	CYCGRG	1 cut(s)	1271
AoxI	GGCC	9 cut(s)	6, 153, 390, 698, 775, 1309, 1515, 2083, 2196
ApaLI	GTGCAC	1 cut(s)	1953
ApeKI	GCWGC	7 cut(s)	309, 325, 421, 956, 959, 985, 1966
ApoI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
AseI	ATTAAT	1 cut(s)	591
Asp718I	GGTACC	1 cut(s)	1935
AspLEI	GCGC	1 cut(s)	613
AsuC2I	CCSGG	2 cut(s)	260, 1535
AsuHPI	GGTGA	4 cut(s)	32, 1100, 1178, 1514
AsuNHI	GCTAGC	1 cut(s)	1361
AvaI	CYCGRG	1 cut(s)	1271
AvaII	GGWCC	6 cut(s)	115, 319, 1531, 1775, 1829, 1928
BaeGI	GKGCMC	1 cut(s)	1957
BaeI	ACNNNNGTAYC	2 cut(s)	1803, 1836
BalI	TGGCCA	2 cut(s)	1517, 2085
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	1742, 1935
BanII	GRGCYC	2 cut(s)	405, 2060
BauI	CACGAG	1 cut(s)	289
Bbv12I	GWGCWC	3 cut(s)	1152, 1957, 2060
BbvCI	CCTCAGC	1 cut(s)	1962
BbvI	GCAGC	7 cut(s)	321, 337, 408, 943, 971, 997, 1953
BccI	CCATC	9 cut(s)	17, 139, 796, 904, 961, 1163, 1466, 1507, 1582
BceAI	ACGGC	1 cut(s)	1696
BciVI	GTATCC	1 cut(s)	1439
BcnI	CCSGG	2 cut(s)	260, 1535
BcoDI	GTCTC	5 cut(s)	106, 271, 278, 552, 2279
BcuI	ACTAGT	1 cut(s)	2042
BfaI	CTAG	8 cut(s)	35, 98, 143, 543, 597, 1362, 1800, 2043
BfmI	CTRYAG	3 cut(s)	957, 2160, 2232
BfrI	CTTAAG	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	1439
BglI	GCCNNNNNGGC	2 cut(s)	152, 197
BmcAI	AGTACT	1 cut(s)	2206
Bme18I	GGWCC	6 cut(s)	115, 319, 1531, 1775, 1829, 1928
BmeT110I	CYCGRG	1 cut(s)	1271
BmsI	GCATC	7 cut(s)	489, 934, 943, 1108, 1186, 1379, 2248
BmtI	GCTAGC	1 cut(s)	1365
BplI	GAGNNNNNCTC	2 cut(s)	1981, 2013
BpmI	CTGGAG	3 cut(s)	1957, 1986, 2193
Bpu10I	CCTNAGC	3 cut(s)	705, 1028, 1962
BpuEI	CTTGAG	3 cut(s)	506, 1484, 1649
BpuMI	CCSGG	2 cut(s)	260, 1535
Bsa29I	ATCGAT	1 cut(s)	1188
BsaBI	GATNNNNATC	1 cut(s)	1233
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	2 cut(s)	278, 552
BsaWI	WCCGGW	2 cut(s)	356, 1816
Bse118I	RCCGGY	5 cut(s)	191, 312, 409, 562, 2065
Bse1I	ACTGG	4 cut(s)	820, 1546, 1728, 1974
Bse3DI	GCAATG	3 cut(s)	1713, 1893, 2076
Bse8I	GATNNNNATC	1 cut(s)	1233
BseCI	ATCGAT	1 cut(s)	1188
BseJI	GATNNNNATC	1 cut(s)	1233
BseMI	GCAATG	3 cut(s)	1713, 1893, 2076
BseMII	CTCAG	7 cut(s)	321, 665, 806, 1242, 1769, 1976, 2186
BseNI	ACTGG	4 cut(s)	820, 1546, 1728, 1974
BseRI	GAGGAG	8 cut(s)	293, 296, 413, 1082, 1833, 1863, 1932, 1989
BseSI	GKGCMC	1 cut(s)	1957
BseXI	GCAGC	7 cut(s)	321, 337, 408, 943, 971, 997, 1953
BseYI	CCCAGC	2 cut(s)	962, 1671
BsgI	GTGCAG	1 cut(s)	2274
Bsh1236I	CGCG	3 cut(s)	385, 613, 1040
Bsh1285I	CGRYCG	2 cut(s)	255, 259
BshFI	GGCC	9 cut(s)	8, 155, 392, 700, 777, 1311, 1517, 2085, 2198
BshNI	GGYRCC	2 cut(s)	1742, 1935
BshVI	ATCGAT	1 cut(s)	1188
BsiEI	CGRYCG	2 cut(s)	255, 259
BsiHKAI	GWGCWC	3 cut(s)	1152, 1957, 2060
BsiHKCI	CYCGRG	1 cut(s)	1271
BslFI	GGGAC	9 cut(s)	262, 332, 1066, 1276, 1330, 1761, 1842, 1847, 2123
BsmAI	GTCTC	5 cut(s)	106, 271, 278, 552, 2279
BsmFI	GGGAC	9 cut(s)	262, 332, 1066, 1276, 1330, 1761, 1842, 1847, 2123
BsmI	GAATGC	1 cut(s)	1792
BsnI	GGCC	9 cut(s)	8, 155, 392, 700, 777, 1311, 1517, 2085, 2198
Bso31I	GGTCTC	2 cut(s)	278, 552
BsoBI	CYCGRG	1 cut(s)	1271
Bsp1286I	GDGCHC	4 cut(s)	405, 1152, 1957, 2060
Bsp1407I	TGTACA	1 cut(s)	1437
Bsp143I	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
Bsp19I	CCATGG	2 cut(s)	1823, 2192
BspANI	GGCC	9 cut(s)	8, 155, 392, 700, 777, 1311, 1517, 2085, 2198
BspCNI	CTCAG	7 cut(s)	322, 664, 805, 1243, 1768, 1975, 2185
BspDI	ATCGAT	1 cut(s)	1188
BspFNI	CGCG	3 cut(s)	385, 613, 1040
BspMAI	CTGCAG	2 cut(s)	961, 2236
BspOI	GCTAGC	1 cut(s)	1365
BspPI	GGATC	4 cut(s)	295, 308, 446, 887
BspT107I	GGYRCC	2 cut(s)	1742, 1935
BspTI	CTTAAG	1 cut(s)	659
BspTNI	GGTCTC	2 cut(s)	278, 552
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	3 cut(s)	1713, 1893, 2076
BsrFI	RCCGGY	5 cut(s)	191, 312, 409, 562, 2065
BsrGI	TGTACA	1 cut(s)	1437
BsrI	ACTGG	4 cut(s)	820, 1546, 1728, 1974
BssAI	RCCGGY	5 cut(s)	191, 312, 409, 562, 2065
BssMI	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	289
BssT1I	CCWWGG	4 cut(s)	779, 1780, 1823, 2192
Bst2BI	CACGAG	1 cut(s)	289
Bst4CI	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
Bst6I	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
BstACI	GRCGYC	1 cut(s)	189
BstAFI	CTTAAG	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	1437
BstC8I	GCNNGC	5 cut(s)	296, 1363, 1609, 1660, 1664
BstDSI	CCRYGG	4 cut(s)	1337, 1823, 1931, 2192
BstENI	CCTNNNNNAGG	1 cut(s)	2001
BstFNI	CGCG	3 cut(s)	385, 613, 1040
BstHHI	GCGC	1 cut(s)	613
BstKTI	GATC	6 cut(s)	40, 303, 454, 895, 1482, 1640
BstMAI	GTCTC	5 cut(s)	106, 271, 278, 552, 2279
BstMBI	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
BstMCI	CGRYCG	2 cut(s)	255, 259
BstNSI	RCATGY	2 cut(s)	920, 1116
BstSFI	CTRYAG	3 cut(s)	957, 2160, 2232
BstSLI	GKGCMC	1 cut(s)	1957
BstUI	CGCG	3 cut(s)	385, 613, 1040
BstV1I	GCAGC	7 cut(s)	321, 337, 408, 943, 971, 997, 1953
BstX2I	RGATCY	1 cut(s)	300
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	300
Bsu15I	ATCGAT	1 cut(s)	1188
BsuI	GTATCC	1 cut(s)	1439
BsuRI	GGCC	9 cut(s)	8, 155, 392, 700, 777, 1311, 1517, 2085, 2198
BsuTUI	ATCGAT	1 cut(s)	1188
BtgI	CCRYGG	4 cut(s)	1337, 1823, 1931, 2192
BtsI	GCAGTG	1 cut(s)	1372
BtsIMutI	CAGTG	3 cut(s)	1354, 1372, 1981
Cac8I	GCNNGC	5 cut(s)	296, 1363, 1609, 1660, 1664
CfoI	GCGC	1 cut(s)	613
Cfr10I	RCCGGY	5 cut(s)	191, 312, 409, 562, 2065
ClaI	ATCGAT	1 cut(s)	1188
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	7 cut(s)	742, 1206, 1438, 1573, 1812, 1936, 2205
CviQI	GTAC	7 cut(s)	742, 1206, 1438, 1573, 1812, 1936, 2205
DpnI	GATC	6 cut(s)	39, 302, 453, 894, 1481, 1639
DpnII	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	1515, 2083
Eam1104I	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
EarI	CTCTTC	5 cut(s)	362, 368, 511, 791, 869
EciI	GGCGGA	5 cut(s)	114, 172, 288, 313, 704
Ecl136II	GAGCTC	1 cut(s)	2058
Eco130I	CCWWGG	4 cut(s)	779, 1780, 1823, 2192
Eco24I	GRGCYC	2 cut(s)	405, 2060
Eco31I	GGTCTC	2 cut(s)	278, 552
Eco32I	GATATC	1 cut(s)	216
Eco47I	GGWCC	6 cut(s)	115, 319, 1531, 1775, 1829, 1928
Eco53kI	GAGCTC	1 cut(s)	2058
Eco57I	CTGAAG	3 cut(s)	1305, 1686, 1866
Eco88I	CYCGRG	1 cut(s)	1271
EcoICRI	GAGCTC	1 cut(s)	2058
EcoNI	CCTNNNNNAGG	1 cut(s)	2001
EcoO109I	RGGNCCY	3 cut(s)	115, 319, 1829
EcoRI	GAATTC	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	216
EcoT14I	CCWWGG	4 cut(s)	779, 1780, 1823, 2192
EcoT22I	ATGCAT	1 cut(s)	1114
EcoT38I	GRGCYC	2 cut(s)	405, 2060
ErhI	CCWWGG	4 cut(s)	779, 1780, 1823, 2192
FaqI	GGGAC	9 cut(s)	262, 332, 1066, 1276, 1330, 1761, 1842, 1847, 2123
FauI	CCCGC	5 cut(s)	70, 239, 330, 356, 1801
FauNDI	CATATG	1 cut(s)	2110
FriOI	GRGCYC	2 cut(s)	405, 2060
FspBI	CTAG	8 cut(s)	35, 98, 143, 543, 597, 1362, 1800, 2043
GlaI	GCGC	1 cut(s)	612
GsaI	CCCAGC	2 cut(s)	966, 1675
GsuI	CTGGAG	3 cut(s)	1957, 1986, 2193
HaeIII	GGCC	9 cut(s)	8, 155, 392, 700, 777, 1311, 1517, 2085, 2198
HgaI	GACGC	1 cut(s)	197
HhaI	GCGC	1 cut(s)	613
Hin1I	GRCGYC	1 cut(s)	189
Hin6I	GCGC	1 cut(s)	611
HinP1I	GCGC	1 cut(s)	611
HincII	GTYRAC	1 cut(s)	1910
HindII	GTYRAC	1 cut(s)	1910
HindIII	AAGCTT	3 cut(s)	465, 707, 719
HinfI	GANTC	6 cut(s)	92, 332, 353, 655, 1274, 1906
HphI	GGTGA	4 cut(s)	32, 1100, 1178, 1514
Hpy166II	GTNNAC	3 cut(s)	1910, 1931, 1955
Hpy188III	TCNNGA	7 cut(s)	169, 455, 485, 950, 1122, 1271, 1395
Hpy8I	GTNNAC	3 cut(s)	1910, 1931, 1955
Hpy99I	CGWCG	3 cut(s)	191, 309, 556
HpyAV	CCTTC	7 cut(s)	96, 530, 730, 847, 1128, 1195, 2112
HpyCH4III	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
HpyCH4IV	ACGT	1 cut(s)	2246
HpySE526I	ACGT	1 cut(s)	2246
Hsp92I	GRCGYC	1 cut(s)	189
HspAI	GCGC	1 cut(s)	611
KflI	GGGWCCC	1 cut(s)	319
KpnI	GGTACC	1 cut(s)	1939
Kzo9I	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
LmnI	GCTCC	6 cut(s)	400, 539, 559, 1858, 2055, 2218
Lsp1109I	GCAGC	7 cut(s)	321, 337, 408, 943, 971, 997, 1953
LweI	GCATC	7 cut(s)	489, 934, 943, 1108, 1186, 1379, 2248
MaeI	CTAG	8 cut(s)	35, 98, 143, 543, 597, 1362, 1800, 2043
MaeII	ACGT	1 cut(s)	2246
MaeIII	GTNAC	5 cut(s)	749, 1502, 1537, 1991, 2114
MalI	GATC	6 cut(s)	39, 302, 453, 894, 1481, 1639
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
MboII	GAAGA	9 cut(s)	379, 385, 498, 808, 835, 886, 1228, 2097, 2220
MfeI	CAATTG	1 cut(s)	1641
MflI	RGATCY	1 cut(s)	300
MhlI	GDGCHC	4 cut(s)	405, 1152, 1957, 2060
MlsI	TGGCCA	2 cut(s)	1517, 2085
MluCI	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
MluNI	TGGCCA	2 cut(s)	1517, 2085
MlyI	GAGTC	3 cut(s)	341, 1283, 1915
MmeI	TCCRAC	3 cut(s)	37, 315, 476
Mox20I	TGGCCA	2 cut(s)	1517, 2085
Mph1103I	ATGCAT	1 cut(s)	1114
MscI	TGGCCA	2 cut(s)	1517, 2085
MseI	TTAA	4 cut(s)	591, 660, 1137, 1401
MslI	CAYNNNNRTG	2 cut(s)	731, 1511
Msp20I	TGGCCA	2 cut(s)	1517, 2085
MspA1I	CMGCKG	4 cut(s)	164, 421, 962, 1966
MspCI	CTTAAG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	1641
Mva1269I	GAATGC	1 cut(s)	1792
MvnI	CGCG	3 cut(s)	385, 613, 1040
NciI	CCSGG	2 cut(s)	260, 1535
NcoI	CCATGG	2 cut(s)	1823, 2192
NdeI	CATATG	1 cut(s)	2110
NdeII	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
NheI	GCTAGC	1 cut(s)	1361
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	1502
NsiI	ATGCAT	1 cut(s)	1114
NspI	RCATGY	2 cut(s)	920, 1116
PasI	CCCWGGG	1 cut(s)	1313
PctI	GAATGC	1 cut(s)	1792
PfeI	GAWTC	3 cut(s)	92, 353, 655
PflMI	CCANNNNNTGG	1 cut(s)	2081
PfoI	TCCNGGA	2 cut(s)	1687, 2002
PleI	GAGTC	3 cut(s)	340, 1282, 1914
PpsI	GAGTC	3 cut(s)	340, 1282, 1914
PpuMI	RGGWCCY	3 cut(s)	115, 319, 1829
PshBI	ATTAAT	1 cut(s)	591
Psp124BI	GAGCTC	1 cut(s)	2060
Psp5II	RGGWCCY	3 cut(s)	115, 319, 1829
PspFI	CCCAGC	2 cut(s)	962, 1671
PspPPI	RGGWCCY	3 cut(s)	115, 319, 1829
PsrI	GAACNNNNNNTAC	2 cut(s)	2258, 2290
PstI	CTGCAG	2 cut(s)	961, 2236
PsuI	RGATCY	1 cut(s)	300
PvuII	CAGCTG	3 cut(s)	421, 962, 1966
RsaI	GTAC	7 cut(s)	743, 1207, 1439, 1574, 1813, 1937, 2206
RsaNI	GTAC	7 cut(s)	742, 1206, 1438, 1573, 1812, 1936, 2205
RseI	CAYNNNNRTG	2 cut(s)	731, 1511
SacI	GAGCTC	1 cut(s)	2060
SaqAI	TTAA	4 cut(s)	591, 660, 1137, 1401
Sau3AI	GATC	6 cut(s)	37, 300, 451, 892, 1479, 1637
ScaI	AGTACT	1 cut(s)	2206
SchI	GAGTC	3 cut(s)	341, 1283, 1915
SduI	GDGCHC	4 cut(s)	405, 1152, 1957, 2060
SfaNI	GCATC	7 cut(s)	489, 934, 943, 1108, 1186, 1379, 2248
SfcI	CTRYAG	3 cut(s)	957, 2160, 2232
SinI	GGWCC	6 cut(s)	115, 319, 1531, 1775, 1829, 1928
SmiMI	CAYNNNNRTG	2 cut(s)	731, 1511
SmlI	CTYRAG	4 cut(s)	485, 659, 1463, 1628
SmoI	CTYRAG	4 cut(s)	485, 659, 1463, 1628
SpeI	ACTAGT	1 cut(s)	2042
Sse9I	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
SspMI	CTAG	8 cut(s)	35, 98, 143, 543, 597, 1362, 1800, 2043
SstI	GAGCTC	1 cut(s)	2060
StyI	CCWWGG	4 cut(s)	779, 1780, 1823, 2192
TaaI	ACNGT	4 cut(s)	1267, 1349, 1497, 1935
TaiI	ACGT	1 cut(s)	2249
TaqI	TCGA	5 cut(s)	27, 168, 450, 607, 1188
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	8 cut(s)	178, 446, 459, 754, 1240, 1398, 1432, 1641
TatI	WGTACW	2 cut(s)	1437, 2204
TauI	GCSGC	6 cut(s)	158, 161, 164, 395, 703, 1043
TfiI	GAWTC	3 cut(s)	92, 353, 655
Tru1I	TTAA	4 cut(s)	591, 660, 1137, 1401
Tru9I	TTAA	4 cut(s)	591, 660, 1137, 1401
TscAI	CASTG	3 cut(s)	1354, 1372, 1981
TseFI	GTSAC	1 cut(s)	1502
TseI	GCWGC	7 cut(s)	309, 325, 421, 956, 959, 985, 1966
Tsp45I	GTSAC	1 cut(s)	1502
TspDTI	ATGAA	7 cut(s)	366, 421, 749, 1214, 1628, 2097, 2266
TspGWI	ACGGA	5 cut(s)	189, 240, 293, 540, 1326
TspRI	CASTG	3 cut(s)	1354, 1372, 1981
Van91I	CCANNNNNTGG	1 cut(s)	2081
Vha464I	CTTAAG	1 cut(s)	659
VneI	GTGCAC	1 cut(s)	1953
VpaK11BI	GGWCC	6 cut(s)	115, 319, 1531, 1775, 1829, 1928
VspI	ATTAAT	1 cut(s)	591
XagI	CCTNNNNNAGG	1 cut(s)	2001
XapI	RAATTY	5 cut(s)	178, 446, 459, 1240, 1432
XceI	RCATGY	2 cut(s)	920, 1116
XspI	CTAG	8 cut(s)	35, 98, 143, 543, 597, 1362, 1800, 2043
ZrmI	AGTACT	1 cut(s)	2206
Zsp2I	ATGCAT	1 cut(s)	1114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.