Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

60558270 .. 60562707

Gene Structure 4438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG385500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2298 bp

ATGGAGGCCATCCAACCAAACCCTATCGAAACCCTAGATCACCAACCTCCCTCCGAACCCCCCGCCTCCTACAACCACCACCCTCCTTCGGAATCTCTAGTCTCCGATTACAAGGACCCGTCTCCTCCCCCATCTCAAACCCTAGCCTCCCAGGCCGCCGCCGCCGCTGTCGAGAACGGAAATTCCGCCGACGCCGGTAAGGCGGTTGCTCTGCTGATATCGGAAAACGGACTGACCAACACGCAGAGCGGGACGACCGACCGGGAAGTCTCCGGCGGAGAGGAGGAGACCACGAGCAGGCGGATCCGTCGCAGCCGGTGGGACCCGCAGCCTGAGTCGGAGAACCAGGGGGATGAATCCGGTAGCGGGAAGAGGAAGAGGAAGTCGCGGTGGGCCGCCGAGGAGCCCAAGCCGGTGGTTCAGCTGCCGGATTTCATGGGAGGTATAGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCTTCTTGAGATTAGTCGGATGCTCTCTTCGGGATTGCCTTTGGATGACAGACCCGAAGGAGCTAGGTCTCCGTCGCCGGAGCCGGTGTATGATAACATGGGGATTAGGATTAATACTAGAGAGTTTCGAGCGCGTGAGAGGTTGAATAGAGAGAGGCAGGAGATTATTGCTCAGATTCTTAAGAGGAACCCTAACTATAAGCCTCCGGCGGATTACAGGCCGCCTAAGCTTCACAAGAAGCTTTACATTCCCATGAAGGAGTACCCTGGTTACAATTTTATTGGGCTTATTATCGGCCCAAGGGGTAATACTCAGAAGAGGATGGAGAAAGAAACTGGTGCGAAGATTGTGATTAGGGGGAAAGGGTCTGTGAAGGAGGGTAGGTTGCAACAGAAGAGGGATTTGAAGCCTGATCCCTCGGAGAATGAGGACTTGCATGTTCTGGTTGAGGCTGATACGCAGGATGCTCTTGATGCTGCAGCTGGGATGGTGGAGAAGCTCTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAACAGCTTAGGGAACTCGCGGCGTTGAATGGGACTATTAGGGATGAGGAGTATTGTAGGTTATGTGGTGAGCCTGGGCATCGTCAGTATGCATGTCCTTCACGAACCTCAACCTTTAAGAGTGATGTCCTCTGTAAGATATGTGGTGATGGTGGGCATCCTACTATCGATTGTCCAATGAAGGGTACATCTGGGAAGAAAATGGATGATGAGTATCAGAATTTTTTGGCTGAGTTAGGTGGGACAGTTCCCGAGTCAGCAACTAAGCAGACTGCTACTCTGGCTCTTGGCCCAGGGACTTCAGTAAGCAATCCTCCGTGGTCTAACAGTGGTGGGAGTGCTAGCAGTGCATCACATCCAGGGTTGGGTTTTTCTGGAATTAAGCCTACTACAAAGGAACATGACGACACAAATTTGTACATTGGATACTTGCCACCTACACTTGAGGATGATGGTTTGATCGGTATGTTTTCACAGTTCGGTGACATTGTGATGGCCAAAGTTATCAAGGACCGTGTTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCAGATGTTCAGATGGCTAATAATGCTATTGCAAGCATGAATGGCTATCGGCTTGAGGGGCGATCAATTGCTGTCAGAGTTGCTGGCAAGCCTCCCCAGCCTGTTGTGCCTTCCGGACTGCCAGCTTCAGCAATGCCGTCATACCCTGTTTCCAGTCAGCCTGTTGGTGCCTATCCCTCTCAGCAGTTTTCCCCTGGTGGTCCTCTTGGGAATGCACCACCTACTAGCTATGCGGGTACTCCGGTGCCATGGGGACCTCCCGTTCCTCCTCCTTATGCTCCTTATGTCCCTCCCCCTCCTCCTGCTTCAGCAATGTTTTATCCTCCCATGAGTCAACCTATGGCTGGTTATGGTCCACGGTACCCTCCTCCCCCTGGTGCACCACCTCAGCTGCCCTCCAGTGAAGCACAGCAGAGTTACCCTCCTCCAGGAGTTCAATCTGAAAACCCTACCCAATCTTTACCAACTAGTATGTATGGGAGCTCTTTACCGGCAATGCCACCAAATGGCCAACACACTTATCCTCCATCTTCATATGGTTACTCATCTTACTACAATGCTGTTCCACCGCCCCCTCCCTCAACTACAGACCAATCTCAGAACATTGGTAATGTGCCATGGGCCACAAGTACTCCAGCTCCCCCTCCTGCTTCTTCTGCAGAGAAAGCAACATATGGTGCAGATGCAGAGTATGAGAAGTTCATGGCAGAGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

765

Amino Acids

82.48

Weight (kDa)

5.75

Isoelectric Point (pI)

59.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	127 - 234	5.9e-25	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	248 - 330	7.6e-24	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	480 - 549	1.1e-17	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc65I	GGTACC	1 cut(s)	1938
AccB1I	GGYRCC	3 cut(s)	1745, 1822, 1938
AccB7I	CCANNNNNTGG	1 cut(s)	2084
AccBSI	CCGCTC	1 cut(s)	249
AccII	CGCG	3 cut(s)	388, 616, 1043
AccIII	TCCGGA	1 cut(s)	1691
AclWI	GGATC	4 cut(s)	298, 311, 449, 890
AcoI	YGGCCR	2 cut(s)	1518, 2086
AcsI	RAATTY	5 cut(s)	181, 449, 462, 1243, 1435
AcuI	CTGAAG	3 cut(s)	1308, 1689, 1869
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	7 cut(s)	746, 1210, 1442, 1577, 1816, 1940, 2209
AfiI	CCNNNNNNNGG	9 cut(s)	88, 297, 366, 1205, 1388, 1922, 1952, 2006, 2084
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	7 cut(s)	467, 475, 628, 889, 1009, 1051, 2015
AhlI	ACTAGT	1 cut(s)	2045
AjnI	CCWGG	9 cut(s)	150, 345, 748, 1096, 1315, 1381, 1771, 1951, 2005
AloI	GAACNNNNNNTCC	4 cut(s)	167, 199, 1824, 1856
Alw21I	GWGCWC	2 cut(s)	1960, 2063
Alw26I	GTCTC	6 cut(s)	106, 126, 274, 281, 555, 2282
Alw44I	GTGCAC	1 cut(s)	1956
AlwI	GGATC	4 cut(s)	298, 311, 449, 890
Ama87I	CYCGRG	1 cut(s)	1274
Aor13HI	TCCGGA	1 cut(s)	1691
AoxI	GGCC	9 cut(s)	6, 153, 393, 701, 778, 1312, 1518, 2086, 2199
ApaLI	GTGCAC	1 cut(s)	1956
ApeKI	GCWGC	7 cut(s)	312, 328, 424, 959, 962, 988, 1969
ApoI	RAATTY	5 cut(s)	181, 449, 462, 1243, 1435
AseI	ATTAAT	1 cut(s)	594
Asp718I	GGTACC	1 cut(s)	1938
AspLEI	GCGC	1 cut(s)	616
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	4 cut(s)	32, 1103, 1181, 1517
AsuNHI	GCTAGC	1 cut(s)	1364
AvaI	CYCGRG	1 cut(s)	1274
AvaII	GGWCC	6 cut(s)	115, 322, 1534, 1778, 1832, 1931
BaeGI	GKGCMC	1 cut(s)	1960
BaeI	ACNNNNGTAYC	2 cut(s)	1806, 1839
BalI	TGGCCA	2 cut(s)	1520, 2088
BamHI	GGATCC	1 cut(s)	303
BanI	GGYRCC	3 cut(s)	1745, 1822, 1938
BanII	GRGCYC	2 cut(s)	408, 2063
BauI	CACGAG	1 cut(s)	292
Bbv12I	GWGCWC	2 cut(s)	1960, 2063
BbvCI	CCTCAGC	1 cut(s)	1965
BbvI	GCAGC	7 cut(s)	324, 340, 411, 946, 974, 1000, 1956
BccI	CCATC	9 cut(s)	17, 139, 799, 964, 1166, 1469, 1510, 1585, 2113
BceAI	ACGGC	1 cut(s)	1699
BciT130I	CCWGG	9 cut(s)	152, 347, 750, 1098, 1317, 1383, 1773, 1953, 2007
BciVI	GTATCC	1 cut(s)	1442
BcnI	CCSGG	1 cut(s)	263
BcoDI	GTCTC	6 cut(s)	106, 126, 274, 281, 555, 2282
BcuI	ACTAGT	1 cut(s)	2045
BfaI	CTAG	8 cut(s)	35, 98, 143, 546, 600, 1365, 1803, 2046
BfmI	CTRYAG	3 cut(s)	960, 2163, 2235
BfrI	CTTAAG	1 cut(s)	662
BfuI	GTATCC	1 cut(s)	1442
BglI	GCCNNNNNGGC	2 cut(s)	152, 200
BmcAI	AGTACT	1 cut(s)	2209
Bme18I	GGWCC	6 cut(s)	115, 322, 1534, 1778, 1832, 1931
BmeT110I	CYCGRG	1 cut(s)	1274
BmsI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
BmtI	GCTAGC	1 cut(s)	1368
BplI	GAGNNNNNCTC	2 cut(s)	1984, 2016
BpmI	CTGGAG	3 cut(s)	1960, 1989, 2196
Bpu10I	CCTNAGC	3 cut(s)	708, 1031, 1965
BpuEI	CTTGAG	3 cut(s)	509, 1487, 1652
BpuMI	CCSGG	1 cut(s)	263
Bsa29I	ATCGAT	1 cut(s)	1191
BsaBI	GATNNNNATC	1 cut(s)	1236
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	2 cut(s)	281, 555
BsaWI	WCCGGW	3 cut(s)	359, 1691, 1819
Bsc4I	CCNNNNNNNGG	9 cut(s)	88, 297, 366, 1205, 1388, 1922, 1952, 2006, 2084
Bse118I	RCCGGY	5 cut(s)	194, 315, 412, 565, 2068
Bse1I	ACTGG	4 cut(s)	823, 1549, 1731, 1977
Bse3DI	GCAATG	3 cut(s)	1716, 1896, 2079
Bse8I	GATNNNNATC	1 cut(s)	1236
BseAI	TCCGGA	1 cut(s)	1691
BseBI	CCWGG	9 cut(s)	152, 347, 750, 1098, 1317, 1383, 1773, 1953, 2007
BseCI	ATCGAT	1 cut(s)	1191
BseJI	GATNNNNATC	1 cut(s)	1236
BseLI	CCNNNNNNNGG	9 cut(s)	88, 297, 366, 1205, 1388, 1922, 1952, 2006, 2084
BseMI	GCAATG	3 cut(s)	1716, 1896, 2079
BseMII	CTCAG	7 cut(s)	324, 668, 809, 1245, 1772, 1979, 2189
BseNI	ACTGG	4 cut(s)	823, 1549, 1731, 1977
BseRI	GAGGAG	9 cut(s)	114, 296, 299, 416, 1085, 1836, 1866, 1935, 1992
BseSI	GKGCMC	1 cut(s)	1960
BseXI	GCAGC	7 cut(s)	324, 340, 411, 946, 974, 1000, 1956
BseYI	CCCAGC	2 cut(s)	965, 1674
BsgI	GTGCAG	1 cut(s)	2277
Bsh1236I	CGCG	3 cut(s)	388, 616, 1043
Bsh1285I	CGRYCG	2 cut(s)	258, 262
BshFI	GGCC	9 cut(s)	8, 155, 395, 703, 780, 1314, 1520, 2088, 2201
BshNI	GGYRCC	3 cut(s)	1745, 1822, 1938
BshVI	ATCGAT	1 cut(s)	1191
BsiEI	CGRYCG	2 cut(s)	258, 262
BsiHKAI	GWGCWC	2 cut(s)	1960, 2063
BsiHKCI	CYCGRG	1 cut(s)	1274
BslFI	GGGAC	7 cut(s)	265, 335, 1069, 1279, 1333, 1845, 1850
BslI	CCNNNNNNNGG	9 cut(s)	88, 297, 366, 1205, 1388, 1922, 1952, 2006, 2084
BsmAI	GTCTC	6 cut(s)	106, 126, 274, 281, 555, 2282
BsmBI	CGTCTC	1 cut(s)	126
BsmFI	GGGAC	7 cut(s)	265, 335, 1069, 1279, 1333, 1845, 1850
BsmI	GAATGC	1 cut(s)	1795
BsnI	GGCC	9 cut(s)	8, 155, 395, 703, 780, 1314, 1520, 2088, 2201
Bso31I	GGTCTC	2 cut(s)	281, 555
BsoBI	CYCGRG	1 cut(s)	1274
Bsp1286I	GDGCHC	3 cut(s)	408, 1960, 2063
Bsp13I	TCCGGA	1 cut(s)	1691
Bsp1407I	TGTACA	1 cut(s)	1440
Bsp143I	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
Bsp19I	CCATGG	2 cut(s)	1826, 2195
BspANI	GGCC	9 cut(s)	8, 155, 395, 703, 780, 1314, 1520, 2088, 2201
BspCNI	CTCAG	7 cut(s)	325, 667, 808, 1246, 1771, 1978, 2188
BspDI	ATCGAT	1 cut(s)	1191
BspEI	TCCGGA	1 cut(s)	1691
BspFNI	CGCG	3 cut(s)	388, 616, 1043
BspMAI	CTGCAG	2 cut(s)	964, 2239
BspOI	GCTAGC	1 cut(s)	1368
BspPI	GGATC	4 cut(s)	298, 311, 449, 890
BspT107I	GGYRCC	3 cut(s)	1745, 1822, 1938
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	2 cut(s)	281, 555
BsrBI	CCGCTC	1 cut(s)	249
BsrDI	GCAATG	3 cut(s)	1716, 1896, 2079
BsrFI	RCCGGY	5 cut(s)	194, 315, 412, 565, 2068
BsrGI	TGTACA	1 cut(s)	1440
BsrI	ACTGG	4 cut(s)	823, 1549, 1731, 1977
BssAI	RCCGGY	5 cut(s)	194, 315, 412, 565, 2068
BssMI	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	292
BssT1I	CCWWGG	3 cut(s)	782, 1826, 2195
Bst2BI	CACGAG	1 cut(s)	292
Bst2UI	CCWGG	9 cut(s)	152, 347, 750, 1098, 1317, 1383, 1773, 1953, 2007
Bst4CI	ACNGT	5 cut(s)	1270, 1352, 1500, 1538, 1938
Bst6I	CTCTTC	5 cut(s)	365, 371, 514, 794, 872
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	1440
BstC8I	GCNNGC	6 cut(s)	299, 1366, 1612, 1663, 1667, 1701
BstDSI	CCRYGG	4 cut(s)	1340, 1826, 1934, 2195
BstENI	CCTNNNNNAGG	1 cut(s)	2004
BstFNI	CGCG	3 cut(s)	388, 616, 1043
BstHHI	GCGC	1 cut(s)	616
BstKTI	GATC	6 cut(s)	40, 306, 457, 898, 1485, 1643
BstMAI	GTCTC	6 cut(s)	106, 126, 274, 281, 555, 2282
BstMBI	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
BstMCI	CGRYCG	2 cut(s)	258, 262
BstNI	CCWGG	9 cut(s)	152, 347, 750, 1098, 1317, 1383, 1773, 1953, 2007
BstNSI	RCATGY	2 cut(s)	923, 1119
BstSFI	CTRYAG	3 cut(s)	960, 2163, 2235
BstSLI	GKGCMC	1 cut(s)	1960
BstUI	CGCG	3 cut(s)	388, 616, 1043
BstV1I	GCAGC	7 cut(s)	324, 340, 411, 946, 974, 1000, 1956
BstX2I	RGATCY	1 cut(s)	303
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	303
Bsu15I	ATCGAT	1 cut(s)	1191
BsuI	GTATCC	1 cut(s)	1442
BsuRI	GGCC	9 cut(s)	8, 155, 395, 703, 780, 1314, 1520, 2088, 2201
BsuTUI	ATCGAT	1 cut(s)	1191
BtgI	CCRYGG	4 cut(s)	1340, 1826, 1934, 2195
BtsI	GCAGTG	1 cut(s)	1375
BtsIMutI	CAGTG	3 cut(s)	1357, 1375, 1984
Cac8I	GCNNGC	6 cut(s)	299, 1366, 1612, 1663, 1667, 1701
CfoI	GCGC	1 cut(s)	616
Cfr10I	RCCGGY	5 cut(s)	194, 315, 412, 565, 2068
ClaI	ATCGAT	1 cut(s)	1191
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	7 cut(s)	745, 1209, 1441, 1576, 1815, 1939, 2208
CviQI	GTAC	7 cut(s)	745, 1209, 1441, 1576, 1815, 1939, 2208
DpnI	GATC	6 cut(s)	39, 305, 456, 897, 1484, 1642
DpnII	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	2 cut(s)	1518, 2086
Eam1104I	CTCTTC	5 cut(s)	365, 371, 514, 794, 872
EarI	CTCTTC	5 cut(s)	365, 371, 514, 794, 872
EciI	GGCGGA	4 cut(s)	175, 291, 316, 707
Ecl136II	GAGCTC	1 cut(s)	2061
Eco130I	CCWWGG	3 cut(s)	782, 1826, 2195
Eco24I	GRGCYC	2 cut(s)	408, 2063
Eco31I	GGTCTC	2 cut(s)	281, 555
Eco32I	GATATC	1 cut(s)	219
Eco47I	GGWCC	6 cut(s)	115, 322, 1534, 1778, 1832, 1931
Eco53kI	GAGCTC	1 cut(s)	2061
Eco57I	CTGAAG	3 cut(s)	1308, 1689, 1869
Eco88I	CYCGRG	1 cut(s)	1274
EcoICRI	GAGCTC	1 cut(s)	2061
EcoNI	CCTNNNNNAGG	1 cut(s)	2004
EcoO109I	RGGNCCY	3 cut(s)	115, 322, 1832
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	9 cut(s)	150, 345, 748, 1096, 1315, 1381, 1771, 1951, 2005
EcoRV	GATATC	1 cut(s)	219
EcoT14I	CCWWGG	3 cut(s)	782, 1826, 2195
EcoT22I	ATGCAT	1 cut(s)	1117
EcoT38I	GRGCYC	2 cut(s)	408, 2063
ErhI	CCWWGG	3 cut(s)	782, 1826, 2195
Esp3I	CGTCTC	1 cut(s)	126
FaqI	GGGAC	7 cut(s)	265, 335, 1069, 1279, 1333, 1845, 1850
FauI	CCCGC	5 cut(s)	70, 242, 333, 359, 1804
FauNDI	CATATG	2 cut(s)	2113, 2251
FriOI	GRGCYC	2 cut(s)	408, 2063
FspBI	CTAG	8 cut(s)	35, 98, 143, 546, 600, 1365, 1803, 2046
GlaI	GCGC	1 cut(s)	615
GsaI	CCCAGC	2 cut(s)	969, 1678
GsuI	CTGGAG	3 cut(s)	1960, 1989, 2196
HaeIII	GGCC	9 cut(s)	8, 155, 395, 703, 780, 1314, 1520, 2088, 2201
HgaI	GACGC	1 cut(s)	200
HhaI	GCGC	1 cut(s)	616
Hin1I	GRCGYC	1 cut(s)	192
Hin6I	GCGC	1 cut(s)	614
HinP1I	GCGC	1 cut(s)	614
HincII	GTYRAC	1 cut(s)	1913
HindII	GTYRAC	1 cut(s)	1913
HindIII	AAGCTT	3 cut(s)	468, 710, 722
HinfI	GANTC	6 cut(s)	92, 335, 356, 658, 1277, 1909
HphI	GGTGA	4 cut(s)	32, 1103, 1181, 1517
Hpy166II	GTNNAC	3 cut(s)	1913, 1934, 1958
Hpy188III	TCNNGA	9 cut(s)	172, 458, 488, 513, 953, 1125, 1274, 1398, 1692
Hpy8I	GTNNAC	3 cut(s)	1913, 1934, 1958
Hpy99I	CGWCG	3 cut(s)	194, 312, 559
HpyAV	CCTTC	7 cut(s)	96, 533, 733, 850, 1131, 1198, 1698
HpyCH4III	ACNGT	5 cut(s)	1270, 1352, 1500, 1538, 1938
Hsp92I	GRCGYC	1 cut(s)	192
HspAI	GCGC	1 cut(s)	614
KflI	GGGWCCC	1 cut(s)	322
Kpn2I	TCCGGA	1 cut(s)	1691
KpnI	GGTACC	1 cut(s)	1942
Kzo9I	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
LmnI	GCTCC	6 cut(s)	403, 542, 562, 1861, 2058, 2221
Lsp1109I	GCAGC	7 cut(s)	324, 340, 411, 946, 974, 1000, 1956
LweI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
MaeI	CTAG	8 cut(s)	35, 98, 143, 546, 600, 1365, 1803, 2046
MaeIII	GTNAC	5 cut(s)	752, 1505, 1540, 1994, 2117
MalI	GATC	6 cut(s)	39, 305, 456, 897, 1484, 1642
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
MboII	GAAGA	9 cut(s)	382, 388, 501, 811, 838, 889, 1231, 2100, 2223
MfeI	CAATTG	1 cut(s)	1644
MflI	RGATCY	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	408, 1960, 2063
MlsI	TGGCCA	2 cut(s)	1520, 2088
MluCI	AATT	8 cut(s)	181, 449, 462, 757, 1243, 1401, 1435, 1644
MluNI	TGGCCA	2 cut(s)	1520, 2088
MlyI	GAGTC	3 cut(s)	344, 1286, 1918
MmeI	TCCRAC	3 cut(s)	37, 318, 479
Mox20I	TGGCCA	2 cut(s)	1520, 2088
Mph1103I	ATGCAT	1 cut(s)	1117
MroI	TCCGGA	1 cut(s)	1691
MscI	TGGCCA	2 cut(s)	1520, 2088
MseI	TTAA	4 cut(s)	594, 663, 1140, 1404
MslI	CAYNNNNRTG	2 cut(s)	734, 1514
Msp20I	TGGCCA	2 cut(s)	1520, 2088
MspA1I	CMGCKG	4 cut(s)	167, 424, 965, 1969
MspCI	CTTAAG	1 cut(s)	662
MunI	CAATTG	1 cut(s)	1644
Mva1269I	GAATGC	1 cut(s)	1795
MvaI	CCWGG	9 cut(s)	152, 347, 750, 1098, 1317, 1383, 1773, 1953, 2007
MvnI	CGCG	3 cut(s)	388, 616, 1043
NciI	CCSGG	1 cut(s)	263
NcoI	CCATGG	2 cut(s)	1826, 2195
NdeI	CATATG	2 cut(s)	2113, 2251
NdeII	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
NheI	GCTAGC	1 cut(s)	1364
NmeAIII	GCCGAG	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	1505
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	2 cut(s)	923, 1119
PasI	CCCWGGG	1 cut(s)	1316
PctI	GAATGC	1 cut(s)	1795
PfeI	GAWTC	3 cut(s)	92, 356, 658
PflMI	CCANNNNNTGG	1 cut(s)	2084
PfoI	TCCNGGA	1 cut(s)	2005
PleI	GAGTC	3 cut(s)	343, 1285, 1917
PpsI	GAGTC	3 cut(s)	343, 1285, 1917
PpuMI	RGGWCCY	3 cut(s)	115, 322, 1832
PshBI	ATTAAT	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	2063
Psp5II	RGGWCCY	3 cut(s)	115, 322, 1832
Psp6I	CCWGG	9 cut(s)	150, 345, 748, 1096, 1315, 1381, 1771, 1951, 2005
PspFI	CCCAGC	2 cut(s)	965, 1674
PspGI	CCWGG	9 cut(s)	150, 345, 748, 1096, 1315, 1381, 1771, 1951, 2005
PspPPI	RGGWCCY	3 cut(s)	115, 322, 1832
PsrI	GAACNNNNNNTAC	2 cut(s)	2261, 2293
PstI	CTGCAG	2 cut(s)	964, 2239
PsuI	RGATCY	1 cut(s)	303
PvuII	CAGCTG	3 cut(s)	424, 965, 1969
RsaI	GTAC	7 cut(s)	746, 1210, 1442, 1577, 1816, 1940, 2209
RsaNI	GTAC	7 cut(s)	745, 1209, 1441, 1576, 1815, 1939, 2208
RseI	CAYNNNNRTG	2 cut(s)	734, 1514
SacI	GAGCTC	1 cut(s)	2063
SaqAI	TTAA	4 cut(s)	594, 663, 1140, 1404
Sau3AI	GATC	6 cut(s)	37, 303, 454, 895, 1482, 1640
ScaI	AGTACT	1 cut(s)	2209
SchI	GAGTC	3 cut(s)	344, 1286, 1918
SduI	GDGCHC	3 cut(s)	408, 1960, 2063
SfaNI	GCATC	7 cut(s)	492, 937, 946, 1111, 1189, 1382, 2251
SfcI	CTRYAG	3 cut(s)	960, 2163, 2235
SinI	GGWCC	6 cut(s)	115, 322, 1534, 1778, 1832, 1931
SmiMI	CAYNNNNRTG	2 cut(s)	734, 1514
SmlI	CTYRAG	4 cut(s)	488, 662, 1466, 1631
SmoI	CTYRAG	4 cut(s)	488, 662, 1466, 1631
SpeI	ACTAGT	1 cut(s)	2045
Sse9I	AATT	8 cut(s)	181, 449, 462, 757, 1243, 1401, 1435, 1644
SspMI	CTAG	8 cut(s)	35, 98, 143, 546, 600, 1365, 1803, 2046
SstI	GAGCTC	1 cut(s)	2063
StyI	CCWWGG	3 cut(s)	782, 1826, 2195
TaaI	ACNGT	5 cut(s)	1270, 1352, 1500, 1538, 1938
TaqI	TCGA	5 cut(s)	27, 171, 453, 610, 1191
TaqII	GACCGA	1 cut(s)	272
TasI	AATT	8 cut(s)	181, 449, 462, 757, 1243, 1401, 1435, 1644
TatI	WGTACW	2 cut(s)	1440, 2207
TauI	GCSGC	7 cut(s)	158, 161, 164, 167, 398, 706, 1046
TfiI	GAWTC	3 cut(s)	92, 356, 658
Tru1I	TTAA	4 cut(s)	594, 663, 1140, 1404
Tru9I	TTAA	4 cut(s)	594, 663, 1140, 1404
TscAI	CASTG	3 cut(s)	1357, 1375, 1984
TseFI	GTSAC	1 cut(s)	1505
TseI	GCWGC	7 cut(s)	312, 328, 424, 959, 962, 988, 1969
Tsp45I	GTSAC	1 cut(s)	1505
TspDTI	ATGAA	7 cut(s)	369, 424, 752, 1217, 1631, 2100, 2269
TspGWI	ACGGA	5 cut(s)	192, 243, 296, 543, 1329
TspRI	CASTG	3 cut(s)	1357, 1375, 1984
Van91I	CCANNNNNTGG	1 cut(s)	2084
Vha464I	CTTAAG	1 cut(s)	662
VneI	GTGCAC	1 cut(s)	1956
VpaK11BI	GGWCC	6 cut(s)	115, 322, 1534, 1778, 1832, 1931
VspI	ATTAAT	1 cut(s)	594
XagI	CCTNNNNNAGG	1 cut(s)	2004
XapI	RAATTY	5 cut(s)	181, 449, 462, 1243, 1435
XceI	RCATGY	2 cut(s)	923, 1119
XspI	CTAG	8 cut(s)	35, 98, 143, 546, 600, 1365, 1803, 2046
ZrmI	AGTACT	1 cut(s)	2209
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.