Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

55612280 .. 55617418

Gene Structure 5139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGGGAACTCTCCAACCAAACCATAACCCTCCTCCCATTGACGATGATGAACCGGATCACGACCCCCCTTATTTTCCCGCCATTTCCGAAATCCCAATGCCTCCGCCTTCGCCTCTTCAGTGCGCTCATACCCTAGCTTCCGGTGCCGGAATTCCCTCCCGGAATCCCGAGACTTCTACTGAGAACGGCGACTCGACCAAACCAGTTGCTAATGACTTCGCCAACACGCACTTCGGCGCCGACCTGGACTTCTCCGGCGGAGAGGAGGAGGCCTCCAGCAGCCGCCGCCGCCGGAGCCGGTGGGACCCTCAGCCGGAGACGGAAAGCCAGAGCGGCGTCTGCGCGAGGAGGAGGAAGTCGCGGTGGGCCGATGAGGAGCCGAAGCCGGTGATTCAGCTGCCGGGGTTCGTGGGAGGTATTGAATTCGATCCTGAAATTCAAGCTTTGAATAGTAGGCATCTTGAGATTAGTAGGATGTTGTCTTCCGGTTTGCCTTTAGATGATCGCCCGGAAGGGGATAGGTCTCCATCGCCGGAGCCGGTGTATGATAACTTTGGAATTAGGATTAATACAAGAGAGTTTCGTGCGCGTGAGAGGTTGAACAAAGAGAGGCAGGAAATTATTACTCAGATTATTAAGAGGAACCCTACATTTAAGCCTCCGGCAGATTACAGGCCGCCCAAGCTTCACAAGAAGCTGTACATACCCGTGAAAGAGTACCCTGGTTATAGTTTTATGGGACTTATCATTGGCCCGAGGGGGAATACCCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTCATTAGGGGTAGAGGGTCGGTGAAAGAGGGTAGGTCGCAACAGAAGAGGGATTCGAAGCCTGACCTGTCTGAAAATGAGGACTTGCATGTTTTGGTCGAGGCTGACACGCAGGAGGCTGTTGATGCCGCAACTGGGATGGTAGAGAAGCTGTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGTGGCAGCAGCTTAAGGAACTTGCGTTGTTGAATGGGACTATTAGGGAAGAGGAGTTTTGTAGGTTATGTGGTGAGCCGGGGCACCATCAGAATGCCTGTCTGTCACGAACTTCAACGTTTAAGAGAGATGTTCTTTGTAAGATATGTGGTGATGGTGGGCATCCAACTATTGATTGTCCAGTGAAGCGTACGAATGGGAAGAAAATGGATGATGAGTACCAGAACTTTTTGGCTGAGTTAGGTGGGACAATGCCCGAATCAGCAACTAAGCAGACTGCTACTTTGGCTCTTGGCGCAGGCAGCTCGGTAAGCAGTCCTCCTTGGGTTAACAATGCTGGGAATGCTAGCAGTACAGCACATCCAGGATTGGGCTCAACTGGATTGAAGCCTAGCAGGGACTATGATGACACAAATTTGTACATTGGGCACTTGCCACCTACTCTTGATGATGATGGTTTGATAAGGTTGTTTTCACGTTTCGGTAATATTGTGATGTGCAAAGTTATTAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCGGATGGCTAATAGTGCAATTGCAAGCATGAATGGTTTTTCCCTCGAGGGTCGAACCATTGCTGTCAGAGTTGCTGGCAAGCCTCAACAGCCTGTTGTGTCTCCTGGACCACCAGCTTCGGCAATGTCACCATACCCGGTCTCAAGCCAGCCTGTTGGTGCTTATCCATCCCAGCAATTTACCCCAGGTGGCCCTCTTTGGACTGTACCATCTACTAGCTATGCAGGAACTCCAGTTCCTTGGGGAACCCCTGTTCCTCCTCCATATTCTCCTTATGCTTCTCCAGCTCCCCCTCCTCCAGGTTCAACCATGTACCCTCCTCCCACGCCGGGTCAACCTGTGGCTGCTTACAGTGCACAATACCCTCCTCCTCCTGGTGCATCACGTCAGCCAGTGACGTTAAGTGAAGCACAACAGAGTTATACTCCTCCAGGGGTACAATCTGAAAGATCTACCCAATCTGCACCAACTAATATATACACAATGCCAACAAATGGCCAACATGCTTATCCTACATCTGCATGTGGCTACCCATCTTACTACAATGCAGTTCCACCACCTCCTGCCCCCGGACCTGTACCTGGTTCAACTGCATACCAATCCCAGAGCATTGGTAATGTGCCATGGGCCACAAGTACTCCTGTTCTTCCTCCTAATTCTTCTGCAGATAAAGCAACTCACGGTGCAGGTGCAGAGTATGAGAAGTTCATGGCGGGTATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

760

Amino Acids

82.18

Weight (kDa)

6.35

Isoelectric Point (pI)

63.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	118 - 225	1.8e-24	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	239 - 321	1.2e-23	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	470 - 539	4.4e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2234
AbsI	CCTCGAGG	1 cut(s)	1601
Acc36I	ACCTGC	1 cut(s)	2234
AccB1I	GGYRCC	3 cut(s)	143, 236, 1074
AccB7I	CCANNNNNTGG	1 cut(s)	2051
AccBSI	CCGCTC	1 cut(s)	333
AccII	CGCG	3 cut(s)	344, 361, 589
AclI	AACGTT	1 cut(s)	1109
AclWI	GGATC	2 cut(s)	63, 422
AcoI	YGGCCR	1 cut(s)	2053
AcsI	RAATTY	4 cut(s)	150, 422, 435, 1405
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	237, 336
AflII	CTTAAG	1 cut(s)	1004
AjiI	CACGTC	1 cut(s)	1943
AjnI	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
AjuI	GAANNNNNNNTTGG	2 cut(s)	215, 247
AloI	GAACNNNNNNTCC	8 cut(s)	1776, 1777, 1794, 1795, 1808, 1809, 1826, 1827
Alw21I	GWGCWC	1 cut(s)	1915
Alw26I	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
Alw44I	GTGCAC	1 cut(s)	1911
AlwI	GGATC	2 cut(s)	63, 422
Ama87I	CYCGRG	3 cut(s)	167, 754, 1601
AoxI	GGCC	7 cut(s)	270, 366, 674, 751, 1747, 2053, 2184
ApaLI	GTGCAC	1 cut(s)	1911
ApeKI	GCWGC	7 cut(s)	279, 397, 961, 997, 1000, 1293, 1901
ApoI	RAATTY	4 cut(s)	150, 422, 435, 1405
ArsI	GACNNNNNNTTYG	2 cut(s)	1258, 1290
AseI	ATTAAT	1 cut(s)	567
AspLEI	GCGC	5 cut(s)	125, 239, 344, 589, 1289
AspS9I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
AsuC2I	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
AsuHPI	GGTGA	5 cut(s)	400, 838, 1076, 1154, 1677
AsuII	TTCGAA	1 cut(s)	860
AsuNHI	GCTAGC	1 cut(s)	1337
AvaI	CYCGRG	3 cut(s)	167, 754, 1601
AvaII	GGWCC	4 cut(s)	304, 1504, 1664, 2129
BaeGI	GKGCMC	3 cut(s)	1077, 1422, 1915
BalI	TGGCCA	1 cut(s)	2055
BanI	GGYRCC	3 cut(s)	143, 236, 1074
BanII	GRGCYC	1 cut(s)	1367
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	1915
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	7 cut(s)	291, 384, 973, 1009, 1012, 1305, 1888
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	1278, 1312
BciT130I	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BcnI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
BcoDI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BfaI	CTAG	4 cut(s)	134, 1338, 1383, 1773
BfmI	CTRYAG	1 cut(s)	2220
BfoI	RGCGCY	1 cut(s)	240
BfrI	CTTAAG	1 cut(s)	1004
BfuAI	ACCTGC	1 cut(s)	2234
BglI	GCCNNNNNGGC	1 cut(s)	333
BglII	AGATCT	1 cut(s)	2006
BmcAI	AGTACT	1 cut(s)	2194
Bme18I	GGWCC	4 cut(s)	304, 1504, 1664, 2129
BmeT110I	CYCGRG	3 cut(s)	167, 754, 1601
BmgBI	CACGTC	1 cut(s)	1943
BmgT120I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
BmrI	ACTGGG	1 cut(s)	948
BmsI	GCATC	4 cut(s)	466, 919, 1162, 1946
BmtI	GCTAGC	1 cut(s)	1341
BmuI	ACTGGG	1 cut(s)	948
BpiI	GAAGAC	1 cut(s)	474
BplI	GAGNNNNNCTC	4 cut(s)	257, 289, 1966, 1998
BpmI	CTGGAG	5 cut(s)	259, 1773, 1824, 1839, 1971
Bpu10I	CCTNAGC	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	860
BpuEI	CTTGAG	2 cut(s)	482, 1684
BpuMI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
BsaHI	GRCGYC	2 cut(s)	237, 336
BsaI	GGTCTC	2 cut(s)	528, 1702
BsaWI	WCCGGW	3 cut(s)	52, 140, 485
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 2179, 2209
Bse118I	RCCGGY	3 cut(s)	297, 385, 538
Bse1I	ACTGG	8 cut(s)	203, 796, 943, 1172, 1375, 1519, 1790, 1949
Bse3DI	GCAATG	2 cut(s)	1614, 1686
BseBI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BseGI	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BseMI	GCAATG	2 cut(s)	1614, 1686
BseMII	CTCAG	4 cut(s)	171, 323, 641, 1218
BseNI	ACTGG	8 cut(s)	203, 796, 943, 1172, 1375, 1519, 1790, 1949
BseSI	GKGCMC	3 cut(s)	1077, 1422, 1915
BseXI	GCAGC	7 cut(s)	291, 384, 973, 1009, 1012, 1305, 1888
BseYI	CCCAGC	2 cut(s)	1328, 1728
BsgI	GTGCAG	3 cut(s)	2004, 2262, 2268
Bsh1236I	CGCG	3 cut(s)	344, 361, 589
BshFI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BshNI	GGYRCC	3 cut(s)	143, 236, 1074
BsiHKAI	GWGCWC	1 cut(s)	1915
BsiHKCI	CYCGRG	3 cut(s)	167, 754, 1601
BsiWI	CGTACG	1 cut(s)	1181
BslFI	GGGAC	5 cut(s)	317, 753, 1042, 1252, 1403
BsmAI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BsmBI	CGTCTC	1 cut(s)	311
BsmFI	GGGAC	5 cut(s)	317, 753, 1042, 1252, 1403
BsmI	GAATGC	2 cut(s)	1090, 1339
BsnI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
Bso31I	GGTCTC	2 cut(s)	528, 1702
BsoBI	CYCGRG	3 cut(s)	167, 754, 1601
Bsp119I	TTCGAA	1 cut(s)	860
Bsp1286I	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
Bsp1407I	TGTACA	2 cut(s)	699, 1410
Bsp143I	GATC	4 cut(s)	55, 427, 502, 2006
Bsp19I	CCATGG	1 cut(s)	2180
BspANI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BspCNI	CTCAG	4 cut(s)	172, 322, 640, 1219
BspFNI	CGCG	3 cut(s)	344, 361, 589
BspMAI	CTGCAG	1 cut(s)	2224
BspMI	ACCTGC	1 cut(s)	2234
BspOI	GCTAGC	1 cut(s)	1341
BspPI	GGATC	2 cut(s)	63, 422
BspT104I	TTCGAA	1 cut(s)	860
BspT107I	GGYRCC	3 cut(s)	143, 236, 1074
BspTI	CTTAAG	1 cut(s)	1004
BspTNI	GGTCTC	2 cut(s)	528, 1702
BsrBI	CCGCTC	1 cut(s)	333
BsrDI	GCAATG	2 cut(s)	1614, 1686
BsrFI	RCCGGY	3 cut(s)	297, 385, 538
BsrGI	TGTACA	2 cut(s)	699, 1410
BsrI	ACTGG	8 cut(s)	203, 796, 943, 1172, 1375, 1519, 1790, 1949
BssAI	RCCGGY	3 cut(s)	297, 385, 538
BssMI	GATC	4 cut(s)	55, 427, 502, 2006
BssNI	GRCGYC	2 cut(s)	237, 336
BssT1I	CCWWGG	3 cut(s)	1313, 1796, 2180
Bst2UI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
Bst4CI	ACNGT	3 cut(s)	1762, 1910, 2240
Bst6I	CTCTTC	4 cut(s)	120, 767, 845, 1035
BstACI	GRCGYC	2 cut(s)	237, 336
BstAFI	CTTAAG	1 cut(s)	1004
BstAUI	TGTACA	2 cut(s)	699, 1410
BstBI	TTCGAA	1 cut(s)	860
BstC8I	GCNNGC	6 cut(s)	1291, 1339, 1582, 1633, 1637, 1706
BstDEI	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
BstDSI	CCRYGG	1 cut(s)	2180
BstENI	CCTNNNNNAGG	1 cut(s)	1854
BstF5I	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BstFNI	CGCG	3 cut(s)	344, 361, 589
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	5 cut(s)	125, 239, 344, 589, 1289
BstKTI	GATC	4 cut(s)	58, 430, 505, 2009
BstMAI	GTCTC	6 cut(s)	164, 311, 528, 782, 1662, 1702
BstMBI	GATC	4 cut(s)	55, 427, 502, 2006
BstNI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
BstNSI	RCATGY	3 cut(s)	896, 2063, 2082
BstSFI	CTRYAG	1 cut(s)	2220
BstSLI	GKGCMC	3 cut(s)	1077, 1422, 1915
BstUI	CGCG	3 cut(s)	344, 361, 589
BstV1I	GCAGC	7 cut(s)	291, 384, 973, 1009, 1012, 1305, 1888
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	1 cut(s)	2006
BstXI	CCANNNNNNTGG	3 cut(s)	1712, 1797, 2168
BstYI	RGATCY	1 cut(s)	2006
BsuRI	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
BtgI	CCRYGG	1 cut(s)	2180
BtgZI	GCGATG	1 cut(s)	513
BtrI	CACGTC	1 cut(s)	1943
BtsCI	GGATG	9 cut(s)	480, 783, 948, 976, 1153, 1207, 1351, 1566, 1724
BtsIMutI	CAGTG	4 cut(s)	125, 1179, 1915, 1956
BveI	ACCTGC	1 cut(s)	2234
Cac8I	GCNNGC	6 cut(s)	1291, 1339, 1582, 1633, 1637, 1706
CfoI	GCGC	5 cut(s)	125, 239, 344, 589, 1289
Cfr10I	RCCGGY	3 cut(s)	297, 385, 538
Cfr13I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
CseI	GACGC	1 cut(s)	325
CsiI	ACCWGGT	1 cut(s)	2137
CviAII	CATG	7 cut(s)	893, 1585, 1867, 2060, 2079, 2181, 2266
DdeI	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	4 cut(s)	57, 429, 504, 2008
DpnII	GATC	4 cut(s)	55, 427, 502, 2006
EaeI	YGGCCR	1 cut(s)	2053
Eam1104I	CTCTTC	4 cut(s)	120, 767, 845, 1035
EarI	CTCTTC	4 cut(s)	120, 767, 845, 1035
EciI	GGCGGA	2 cut(s)	93, 273
Eco130I	CCWWGG	3 cut(s)	1313, 1796, 2180
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	1367
Eco31I	GGTCTC	2 cut(s)	528, 1702
Eco47I	GGWCC	4 cut(s)	304, 1504, 1664, 2129
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	3 cut(s)	167, 754, 1601
EcoNI	CCTNNNNNAGG	1 cut(s)	1854
EcoO109I	RGGNCCY	1 cut(s)	304
EcoRI	GAATTC	2 cut(s)	150, 422
EcoRII	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
EcoT14I	CCWWGG	3 cut(s)	1313, 1796, 2180
EcoT38I	GRGCYC	1 cut(s)	1367
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	3 cut(s)	1313, 1796, 2180
Esp3I	CGTCTC	1 cut(s)	311
FaeI	CATG	7 cut(s)	896, 1588, 1870, 2063, 2082, 2184, 2269
FaqI	GGGAC	5 cut(s)	317, 753, 1042, 1252, 1403
FatI	CATG	7 cut(s)	892, 1584, 1866, 2059, 2078, 2180, 2265
FauI	CCCGC	2 cut(s)	85, 2263
FokI	GGATG	9 cut(s)	487, 790, 955, 983, 1140, 1214, 1338, 1573, 1711
FriOI	GRGCYC	1 cut(s)	1367
FspBI	CTAG	4 cut(s)	134, 1338, 1383, 1773
GlaI	GCGC	5 cut(s)	124, 238, 343, 588, 1288
GsaI	CCCAGC	2 cut(s)	1332, 1732
GsuI	CTGGAG	5 cut(s)	259, 1773, 1824, 1839, 1971
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	7 cut(s)	272, 368, 676, 753, 1749, 2055, 2186
HgaI	GACGC	1 cut(s)	325
HhaI	GCGC	5 cut(s)	125, 239, 344, 589, 1289
Hin1I	GRCGYC	2 cut(s)	237, 336
Hin1II	CATG	7 cut(s)	896, 1588, 1870, 2063, 2082, 2184, 2269
Hin6I	GCGC	5 cut(s)	123, 237, 342, 587, 1287
HinP1I	GCGC	5 cut(s)	123, 237, 342, 587, 1287
HincII	GTYRAC	2 cut(s)	1321, 1892
HindII	GTYRAC	2 cut(s)	1321, 1892
HindIII	AAGCTT	2 cut(s)	441, 683
HinfI	GANTC	5 cut(s)	163, 191, 391, 857, 1250
HpaI	GTTAAC	1 cut(s)	1321
HphI	GGTGA	5 cut(s)	400, 838, 1076, 1154, 1677
Hpy166II	GTNNAC	3 cut(s)	1321, 1892, 1913
Hpy188I	TCNGA	7 cut(s)	88, 630, 877, 1083, 1560, 1625, 2002
Hpy188III	TCNNGA	6 cut(s)	59, 167, 431, 461, 1098, 1436
Hpy8I	GTNNAC	3 cut(s)	1321, 1892, 1913
HpyAV	CCTTC	3 cut(s)	117, 506, 778
HpyCH4III	ACNGT	3 cut(s)	1762, 1910, 2240
HpyCH4IV	ACGT	4 cut(s)	1109, 1468, 1942, 1955
HpyF3I	CTNAG	6 cut(s)	180, 309, 627, 798, 1227, 1260
HpySE526I	ACGT	4 cut(s)	1109, 1468, 1942, 1955
Hsp92I	GRCGYC	2 cut(s)	237, 336
Hsp92II	CATG	7 cut(s)	896, 1588, 1870, 2063, 2082, 2184, 2269
HspAI	GCGC	5 cut(s)	123, 237, 342, 587, 1287
KasI	GGCGCC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	304
KspAI	GTTAAC	1 cut(s)	1321
Kzo9I	GATC	4 cut(s)	55, 427, 502, 2006
LmnI	GCTCC	4 cut(s)	294, 376, 535, 1849
Lsp1109I	GCAGC	7 cut(s)	291, 384, 973, 1009, 1012, 1305, 1888
LweI	GCATC	4 cut(s)	466, 919, 1162, 1946
MabI	ACCWGGT	1 cut(s)	2137
MaeI	CTAG	4 cut(s)	134, 1338, 1383, 1773
MaeII	ACGT	4 cut(s)	1109, 1468, 1942, 1955
MaeIII	GTNAC	3 cut(s)	1095, 1683, 1951
MalI	GATC	4 cut(s)	57, 429, 504, 2008
MbiI	CCGCTC	1 cut(s)	333
MboI	GATC	4 cut(s)	55, 427, 502, 2006
MboII	GAAGA	8 cut(s)	107, 474, 784, 862, 1052, 1204, 2195, 2208
MfeI	CAATTG	1 cut(s)	1575
MflI	RGATCY	1 cut(s)	2006
MhlI	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
MlsI	TGGCCA	1 cut(s)	2055
MluCI	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
MluNI	TGGCCA	1 cut(s)	2055
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	185
MmeI	TCCRAC	2 cut(s)	37, 1181
Mox20I	TGGCCA	1 cut(s)	2055
MscI	TGGCCA	1 cut(s)	2055
MseI	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
MslI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
Msp20I	TGGCCA	1 cut(s)	2055
MspA1I	CMGCKG	1 cut(s)	397
MspCI	CTTAAG	1 cut(s)	1004
MunI	CAATTG	1 cut(s)	1575
Mva1269I	GAATGC	2 cut(s)	1090, 1339
MvaI	CCWGG	9 cut(s)	245, 723, 1356, 1662, 1743, 1857, 1932, 1989, 2139
MvnI	CGCG	3 cut(s)	344, 361, 589
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	8 cut(s)	160, 402, 509, 1071, 1508, 1694, 1887, 2127
NcoI	CCATGG	1 cut(s)	2180
NdeII	GATC	4 cut(s)	55, 427, 502, 2006
NheI	GCTAGC	1 cut(s)	1337
NlaIII	CATG	7 cut(s)	896, 1588, 1870, 2063, 2082, 2184, 2269
NmuCI	GTSAC	3 cut(s)	1095, 1683, 1951
NspI	RCATGY	3 cut(s)	896, 2063, 2082
NspV	TTCGAA	1 cut(s)	860
PaeR7I	CTCGAG	1 cut(s)	1601
PaqCI	CACCTGC	1 cut(s)	2234
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	2 cut(s)	1090, 1339
PfeI	GAWTC	4 cut(s)	163, 391, 857, 1250
Pfl23II	CGTACG	1 cut(s)	1181
PflMI	CCANNNNNTGG	1 cut(s)	2051
PfoI	TCCNGGA	3 cut(s)	158, 1354, 1660
PleI	GAGTC	1 cut(s)	185
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	185
PpuMI	RGGWCCY	1 cut(s)	304
PshBI	ATTAAT	1 cut(s)	567
Psp1406I	AACGTT	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	304
Psp6I	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
PspFI	CCCAGC	2 cut(s)	1328, 1728
PspGI	CCWGG	9 cut(s)	243, 721, 1354, 1660, 1741, 1855, 1930, 1987, 2137
PspLI	CGTACG	1 cut(s)	1181
PspPI	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
PspPPI	RGGWCCY	1 cut(s)	304
PspXI	VCTCGAGB	1 cut(s)	1601
PsrI	GAACNNNNNNTAC	2 cut(s)	2246, 2278
PstI	CTGCAG	1 cut(s)	2224
PsuI	RGATCY	1 cut(s)	2006
PvuII	CAGCTG	1 cut(s)	397
RseI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
SaqAI	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
Sau3AI	GATC	4 cut(s)	55, 427, 502, 2006
Sau96I	GGNCC	8 cut(s)	304, 366, 752, 1504, 1664, 1748, 2129, 2184
ScaI	AGTACT	1 cut(s)	2194
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	4 cut(s)	1077, 1367, 1422, 1915
SexAI	ACCWGGT	1 cut(s)	2137
SfaNI	GCATC	4 cut(s)	466, 919, 1162, 1946
SfcI	CTRYAG	1 cut(s)	2220
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	1601
SfuI	TTCGAA	1 cut(s)	860
SinI	GGWCC	4 cut(s)	304, 1504, 1664, 2129
SlaI	CTCGAG	1 cut(s)	1601
SmiMI	CAYNNNNRTG	3 cut(s)	707, 1083, 2077
SmlI	CTYRAG	4 cut(s)	461, 1004, 1601, 1699
SmoI	CTYRAG	4 cut(s)	461, 1004, 1601, 1699
Sse9I	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
SseBI	AGGCCT	1 cut(s)	272
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	1480
SspMI	CTAG	4 cut(s)	134, 1338, 1383, 1773
StuI	AGGCCT	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	1313, 1796, 2180
TaaI	ACNGT	3 cut(s)	1762, 1910, 2240
TaiI	ACGT	4 cut(s)	1112, 1471, 1945, 1958
TaqI	TCGA	6 cut(s)	194, 426, 860, 903, 1602, 1609
TasI	AATT	9 cut(s)	150, 422, 435, 558, 618, 1405, 1575, 1733, 2212
TatI	WGTACW	4 cut(s)	699, 1343, 1410, 2192
TauI	GCSGC	6 cut(s)	285, 288, 291, 336, 679, 935
TfiI	GAWTC	4 cut(s)	163, 391, 857, 1250
Tru1I	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
Tru9I	TTAA	8 cut(s)	567, 636, 654, 1005, 1113, 1320, 1500, 1958
TscAI	CASTG	4 cut(s)	125, 1179, 1915, 1956
TseFI	GTSAC	3 cut(s)	1095, 1683, 1951
TseI	GCWGC	7 cut(s)	279, 397, 961, 997, 1000, 1293, 1901
Tsp45I	GTSAC	3 cut(s)	1095, 1683, 1951
TspDTI	ATGAA	3 cut(s)	63, 1601, 2254
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	4 cut(s)	125, 1179, 1915, 1956
Van91I	CCANNNNNTGG	1 cut(s)	2051
Vha464I	CTTAAG	1 cut(s)	1004
VneI	GTGCAC	1 cut(s)	1911
VpaK11BI	GGWCC	4 cut(s)	304, 1504, 1664, 2129
VspI	ATTAAT	1 cut(s)	567
XagI	CCTNNNNNAGG	1 cut(s)	1854
XapI	RAATTY	4 cut(s)	150, 422, 435, 1405
XceI	RCATGY	3 cut(s)	896, 2063, 2082
XhoI	CTCGAG	1 cut(s)	1601
XspI	CTAG	4 cut(s)	134, 1338, 1383, 1773
ZrmI	AGTACT	1 cut(s)	2194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.