Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005164

Physical Location & Seq

Genomic Coordinates Forward (+)

60393841 .. 60399055

Gene Structure 5215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG415800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGGGAACTCTCCAACCAAACCCTAATCCTCCTCCCATTGACGATGATGAACCGGATCACGAGCCGCCTTATTTTCCCGTCATTTCCGAAATCCCAATGCCTCCGCCTTCGCCTCTTCAGTGCGCTCAAACCCTAGCTTCCGGTGCCGGAATTCCCTCCCGGAATCCCGAGACTTCTACTGAGAACGGCGACTCGACCAAACCGGTTGCTAATGGCTTCGCCAACACGCACTTAGGCGCCGACCTGGACTTCTCCGGCGGAGAGGAGGAGGCCTCCAGCAGCCGCCGCCGCAGCCGGTGGGACCCCCAGCGGGAGACGGAAAGCCAGAGCGGCGTCGGCGCGAGGAGGAGGAAGTCACGGTGGGTCGATGAGGAGCCGAAGCCGGTGATTCAGCTGCCGGGGTTCATGGGAGGTATTGAATTGGATCCTGAAATTCAAGCTTTGAATAGTAGGCATCTTGAGATTAGTAGGATGTTGTCTTCCGGTTTGCCTTTAGATGATCGCCCGGAAGGGGATAGGTCTCCATCGCCGGAGCCGGTGTATGATAACTTTGGAATTAGGATTAATACAAGAGAGTTTCGTGCGCGTGAGGGGTTGAACAAAGAGAGGCAGGAAATTATTACTCAGATTATTAAGAGGAACCCTACATTTAAGCCTCCGGCGGATTACAGGCCGCCCAAGCTTCACAAGAAGCTGTACATACCCGTGAAAGAGTACCCTGGTTATAGTTTTATGGGACTCATCATTGGCCCGAGGGGGAATACCCAGAAGAGGATGGAGAAGGAGACTGGTGCTAAGATTGTCATTAGGGGTAGAGGGTCGGTGAAAGAGGGCAGGTCACAACAGAAGAGGGATTCGAAGCCTGACCCGTCTGAAAATGAGGACTTGCATGTTTTGGTTGAGGCTGACACGCAGGAGGCTGTTGATGCCGCAACTGGGATGGTAGAGAAGCTGTTGCAGCCTGTGGATGAGGTGTTGAATGAGCATAAGAGGCAGCAGCTTGAGGAACTCGCGATGTTGAATGGGACTATTAGGGAAGAGGAGTTTTGTAGGTTATGTGGTGAGCTGGGGCACCATCAGAATGCCTGTCTGTCACGAACTTCAACGTTTAAGAGCGATGTTCTTTGTAAGATATGTGGTGATGGTGGGCATCCAACTATTGATTGTCCAGTGAAGGGTACGAATGGGAAGAAAATGGATGATGAGTACCGGAACTTTTTGGCTGAGTTGGGTGGGACAATGCCTGAATCAGCAACTAAGCAGACTGCTACTTTGGCTCTTGGCGCAGGCAGTTCAGTAAGCAGTCCTCCTTGGGTTAACAATGCTGGGAATGCTAGCAGTACAGCACATCCAGGATTGGGCTCAACTGGATTGAAGCCTAGCAGGGAATATGATGACACAAATTTGTACATTGGGCACTTGCCACCTACTCTTGATGATGATGGTTTGATAAGGTTGTTTTCACGTTTCGGTAATATTGTGATGTGCAAAGTTATTAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTACGCTGATGTTCGGATGGCTAATAGTGCAATTGCAAGCATGAATGGTTTTTCCCTCGAGGGTCGAACCATTGCTGTCAGAGTTGCTGGCAAGCCTCAACAGCCTGTTGTGTCTCCTGGACCACCAGCTTCGGCAATGTCACCATACCCGGTCTCAAGCCAGCCTGTTGGTGCTTATCCATCCCAGCAATTTACCCCAGGTGGCCCTCTTTGGACTGTACCATCTACTAGCTATGCAGGAACTCCAGTTCCTTGGGGACCCCCTGTTCCTCCTCCGTATTCTCCTTATGCTTCTCCAGCTCCCCCTCCTCCAGGTTCAACCATGTATCCTCCTCCCACGCCGGGTCAACCTGTGGCTGCTTACAGTGCACAATACCCTCCTCCTCCTGGTGCATCACGTCAGCCAGTGACGTTAAGTGAAGCACAACAGAATTATACTCCTCCAGGGGTACAATCTGAAAGATCTACCCAATCTGCACCAACTAATATATACACAATGGCAACAAATGGCCAACATGCTTATCCTACATCTGCATATGGCTACCCATCTTACTACAATGCAGTTCCACCACCTGCTGCCCCCGGACCTGTACCTGGTTCAACTGCATACCAATCCCAGAGCATTGGTAATGTGCCATGGGCCACAAGTACTCCTGTTCTTCCTCCTACTTCTTCTGCAGTTAAAGCAACTCACGGTGCAAATGCAGAGTATGAGAAGTTCATGGCGGATATGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

759

Amino Acids

81.85

Weight (kDa)

6.08

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SF1-HH	PF16275	117 - 224	6.7e-24	Splicing factor 1 helix-hairpin domain
KH-I_KHDC4-BBP	PF22675	238 - 320	1.2e-23	KHDC4/BBP-like, KH-domain type I
RRM_1	PF00076	469 - 538	4.3e-19	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005164)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51300 AT5G51300 AT5G51300
fragaria_vesca	FvH4_6g31120 FvH4_6g31120 FvH4_7g27230 FvH4_7g27230
malus_domestica	MD01G1181200.v1.1 MD07G1251300.v1.1
prunus_persica	Prupe.2G275100_v2.0.a1
pyrus_communis	pycom01g19120 pycom07g22400
rosa_chinensis	RchiOBHm_Chr1g0374011 RchiOBHm_Chr2g0137831
rosa_laevigata	RLG00000019679 RLG00000026786
rosa_roxburghii	Rroxscaffold_2G00106780 Rroxscaffold_4G00283830
rosa_rugosa	Rorug01G0380300 Rorug02G0346500
rosa_samantha	Rh1AG390700 Rh1BG354800 Rh1CG367900 Rh1DG385500 Rh2AG393200 Rh2BG400800 Rh2CG379900 Rh2DG415800
rosa_wichuraiana	Rw1G034450 Rw2G032210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2122
AbsI	CCTCGAGG	1 cut(s)	1598
Acc36I	ACCTGC	2 cut(s)	825, 2122
AccB1I	GGYRCC	3 cut(s)	143, 236, 1071
AccBSI	CCGCTC	1 cut(s)	330
AccII	CGCG	3 cut(s)	341, 586, 1013
AclI	AACGTT	1 cut(s)	1106
AclWI	GGATC	3 cut(s)	63, 419, 432
AcoI	YGGCCR	1 cut(s)	2050
AcsI	RAATTY	3 cut(s)	150, 432, 1402
AcuI	CTGAAG	1 cut(s)	101
AcyI	GRCGYC	2 cut(s)	237, 333
AgeI	ACCGGT	1 cut(s)	202
AjiI	CACGTC	1 cut(s)	1940
AjnI	CCWGG	9 cut(s)	243, 718, 1351, 1657, 1738, 1852, 1927, 1984, 2134
AloI	GAACNNNNNNTCC	6 cut(s)	1773, 1774, 1791, 1805, 1806, 1823
Alw21I	GWGCWC	1 cut(s)	1912
Alw26I	GTCTC	6 cut(s)	164, 308, 525, 779, 1659, 1699
Alw44I	GTGCAC	1 cut(s)	1908
AlwI	GGATC	3 cut(s)	63, 419, 432
Ama87I	CYCGRG	3 cut(s)	167, 751, 1598
AoxI	GGCC	6 cut(s)	270, 671, 748, 1744, 2050, 2181
ApaLI	GTGCAC	1 cut(s)	1908
ApeKI	GCWGC	8 cut(s)	279, 291, 394, 958, 994, 997, 1898, 2117
ApoI	RAATTY	3 cut(s)	150, 432, 1402
ArsI	GACNNNNNNTTYG	2 cut(s)	1255, 1287
AseI	ATTAAT	1 cut(s)	564
AsiGI	ACCGGT	1 cut(s)	202
AspLEI	GCGC	5 cut(s)	125, 239, 341, 586, 1286
AspS9I	GGNCC	8 cut(s)	301, 749, 1501, 1661, 1745, 1799, 2126, 2181
AsuC2I	CCSGG	7 cut(s)	160, 399, 506, 1505, 1691, 1884, 2124
AsuHPI	GGTGA	5 cut(s)	397, 835, 1073, 1151, 1674
AsuII	TTCGAA	1 cut(s)	857
AsuNHI	GCTAGC	1 cut(s)	1334
AvaI	CYCGRG	3 cut(s)	167, 751, 1598
AvaII	GGWCC	5 cut(s)	301, 1501, 1661, 1799, 2126
BaeGI	GKGCMC	3 cut(s)	1074, 1419, 1912
BalI	TGGCCA	1 cut(s)	2052
BamHI	GGATCC	1 cut(s)	424
BanI	GGYRCC	3 cut(s)	143, 236, 1071
BanII	GRGCYC	1 cut(s)	1364
BauI	CACGAG	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	1 cut(s)	1912
BbvI	GCAGC	8 cut(s)	291, 303, 381, 970, 1006, 1009, 1885, 2104
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	9 cut(s)	245, 720, 1353, 1659, 1740, 1854, 1929, 1986, 2136
BciVI	GTATCC	1 cut(s)	1878
BcnI	CCSGG	7 cut(s)	160, 399, 506, 1505, 1691, 1884, 2124
BcoDI	GTCTC	6 cut(s)	164, 308, 525, 779, 1659, 1699
BfaI	CTAG	4 cut(s)	134, 1335, 1380, 1770
BfmI	CTRYAG	1 cut(s)	2217
BfoI	RGCGCY	1 cut(s)	240
BfuAI	ACCTGC	2 cut(s)	825, 2122
BfuI	GTATCC	1 cut(s)	1878
BglI	GCCNNNNNGGC	1 cut(s)	330
BglII	AGATCT	1 cut(s)	2003
BmcAI	AGTACT	1 cut(s)	2191
Bme18I	GGWCC	5 cut(s)	301, 1501, 1661, 1799, 2126
BmeT110I	CYCGRG	3 cut(s)	167, 751, 1598
BmgBI	CACGTC	1 cut(s)	1940
BmgT120I	GGNCC	8 cut(s)	301, 749, 1501, 1661, 1745, 1799, 2126, 2181
BmrI	ACTGGG	1 cut(s)	945
BmsI	GCATC	4 cut(s)	463, 916, 1159, 1943
BmtI	GCTAGC	1 cut(s)	1338
BmuI	ACTGGG	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	471
BplI	GAGNNNNNCTC	2 cut(s)	257, 289
BpmI	CTGGAG	5 cut(s)	259, 1770, 1821, 1836, 1968
Bpu14I	TTCGAA	1 cut(s)	857
BpuEI	CTTGAG	3 cut(s)	479, 1022, 1681
BpuMI	CCSGG	7 cut(s)	160, 399, 506, 1505, 1691, 1884, 2124
BsaHI	GRCGYC	2 cut(s)	237, 333
BsaI	GGTCTC	2 cut(s)	525, 1699
BsaJI	CCNNGG	9 cut(s)	398, 718, 752, 1310, 1738, 1793, 1985, 2122, 2177
BsaWI	WCCGGW	5 cut(s)	52, 140, 202, 482, 1209
BsaXI	ACNNNNNCTCC	4 cut(s)	524, 554, 2176, 2206
Bse118I	RCCGGY	4 cut(s)	202, 294, 382, 535
Bse1I	ACTGG	7 cut(s)	793, 940, 1169, 1372, 1516, 1787, 1946
Bse3DI	GCAATG	2 cut(s)	1611, 1683
BseBI	CCWGG	9 cut(s)	245, 720, 1353, 1659, 1740, 1854, 1929, 1986, 2136
BseDI	CCNNGG	9 cut(s)	398, 718, 752, 1310, 1738, 1793, 1985, 2122, 2177
BseGI	GGATG	9 cut(s)	477, 780, 945, 973, 1150, 1204, 1348, 1563, 1721
BseMI	GCAATG	2 cut(s)	1611, 1683
BseMII	CTCAG	3 cut(s)	171, 638, 1215
BseNI	ACTGG	7 cut(s)	793, 940, 1169, 1372, 1516, 1787, 1946
BseSI	GKGCMC	3 cut(s)	1074, 1419, 1912
BseXI	GCAGC	8 cut(s)	291, 303, 381, 970, 1006, 1009, 1885, 2104
BseYI	CCCAGC	4 cut(s)	306, 1066, 1325, 1725
BsgI	GTGCAG	1 cut(s)	2001
Bsh1236I	CGCG	3 cut(s)	341, 586, 1013
BshFI	GGCC	6 cut(s)	272, 673, 750, 1746, 2052, 2183
BshNI	GGYRCC	3 cut(s)	143, 236, 1071
BshTI	ACCGGT	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	1912
BsiHKCI	CYCGRG	3 cut(s)	167, 751, 1598
BslFI	GGGAC	5 cut(s)	314, 750, 1039, 1249, 1812
BsmAI	GTCTC	6 cut(s)	164, 308, 525, 779, 1659, 1699
BsmBI	CGTCTC	1 cut(s)	308
BsmFI	GGGAC	5 cut(s)	314, 750, 1039, 1249, 1812
BsmI	GAATGC	2 cut(s)	1087, 1336
BsnI	GGCC	6 cut(s)	272, 673, 750, 1746, 2052, 2183
Bso31I	GGTCTC	2 cut(s)	525, 1699
BsoBI	CYCGRG	3 cut(s)	167, 751, 1598
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	4 cut(s)	1074, 1364, 1419, 1912
Bsp1407I	TGTACA	2 cut(s)	696, 1407
Bsp143I	GATC	4 cut(s)	55, 424, 499, 2003
Bsp19I	CCATGG	1 cut(s)	2177
Bsp68I	TCGCGA	1 cut(s)	1013
BspANI	GGCC	6 cut(s)	272, 673, 750, 1746, 2052, 2183
BspCNI	CTCAG	3 cut(s)	172, 637, 1216
BspFNI	CGCG	3 cut(s)	341, 586, 1013
BspMAI	CTGCAG	1 cut(s)	2221
BspMI	ACCTGC	2 cut(s)	825, 2122
BspOI	GCTAGC	1 cut(s)	1338
BspPI	GGATC	3 cut(s)	63, 419, 432
BspT104I	TTCGAA	1 cut(s)	857
BspT107I	GGYRCC	3 cut(s)	143, 236, 1071
BspTNI	GGTCTC	2 cut(s)	525, 1699
BsrBI	CCGCTC	1 cut(s)	330
BsrDI	GCAATG	2 cut(s)	1611, 1683
BsrFI	RCCGGY	4 cut(s)	202, 294, 382, 535
BsrGI	TGTACA	2 cut(s)	696, 1407
BsrI	ACTGG	7 cut(s)	793, 940, 1169, 1372, 1516, 1787, 1946
BssAI	RCCGGY	4 cut(s)	202, 294, 382, 535
BssECI	CCNNGG	9 cut(s)	398, 718, 752, 1310, 1738, 1793, 1985, 2122, 2177
BssMI	GATC	4 cut(s)	55, 424, 499, 2003
BssNI	GRCGYC	2 cut(s)	237, 333
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	3 cut(s)	1310, 1793, 2177
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	9 cut(s)	245, 720, 1353, 1659, 1740, 1854, 1929, 1986, 2136
Bst4CI	ACNGT	4 cut(s)	360, 1759, 1907, 2237
Bst6I	CTCTTC	4 cut(s)	120, 764, 842, 1032
BstACI	GRCGYC	2 cut(s)	237, 333
BstAUI	TGTACA	2 cut(s)	696, 1407
BstBI	TTCGAA	1 cut(s)	857
BstC8I	GCNNGC	6 cut(s)	1288, 1336, 1579, 1630, 1634, 1703
BstDEI	CTNAG	6 cut(s)	180, 232, 624, 795, 1224, 1257
BstDSI	CCRYGG	1 cut(s)	2177
BstENI	CCTNNNNNAGG	1 cut(s)	1851
BstF5I	GGATG	9 cut(s)	477, 780, 945, 973, 1150, 1204, 1348, 1563, 1721
BstFNI	CGCG	3 cut(s)	341, 586, 1013
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	5 cut(s)	125, 239, 341, 586, 1286
BstKTI	GATC	4 cut(s)	58, 427, 502, 2006
BstMAI	GTCTC	6 cut(s)	164, 308, 525, 779, 1659, 1699
BstMBI	GATC	4 cut(s)	55, 424, 499, 2003
BstNI	CCWGG	9 cut(s)	245, 720, 1353, 1659, 1740, 1854, 1929, 1986, 2136
BstNSI	RCATGY	2 cut(s)	893, 2060
BstSFI	CTRYAG	1 cut(s)	2217
BstSLI	GKGCMC	3 cut(s)	1074, 1419, 1912
BstUI	CGCG	3 cut(s)	341, 586, 1013
BstV1I	GCAGC	8 cut(s)	291, 303, 381, 970, 1006, 1009, 1885, 2104
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	2 cut(s)	424, 2003
BstXI	CCANNNNNNTGG	3 cut(s)	1709, 1794, 2165
BstYI	RGATCY	2 cut(s)	424, 2003
BsuI	GTATCC	1 cut(s)	1878
BsuRI	GGCC	6 cut(s)	272, 673, 750, 1746, 2052, 2183
BtgI	CCRYGG	1 cut(s)	2177
BtgZI	GCGATG	3 cut(s)	510, 1028, 1131
BtrI	CACGTC	1 cut(s)	1940
BtsCI	GGATG	9 cut(s)	477, 780, 945, 973, 1150, 1204, 1348, 1563, 1721
BtsIMutI	CAGTG	4 cut(s)	125, 1176, 1912, 1953
BtuMI	TCGCGA	1 cut(s)	1013
BveI	ACCTGC	2 cut(s)	825, 2122
Cac8I	GCNNGC	6 cut(s)	1288, 1336, 1579, 1630, 1634, 1703
CfoI	GCGC	5 cut(s)	125, 239, 341, 586, 1286
Cfr10I	RCCGGY	4 cut(s)	202, 294, 382, 535
Cfr13I	GGNCC	8 cut(s)	301, 749, 1501, 1661, 1745, 1799, 2126, 2181
CseI	GACGC	1 cut(s)	322
CsiI	ACCWGGT	1 cut(s)	2134
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	7 cut(s)	406, 890, 1582, 1864, 2057, 2178, 2263
DdeI	CTNAG	6 cut(s)	180, 232, 624, 795, 1224, 1257
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	4 cut(s)	57, 426, 501, 2005
DpnII	GATC	4 cut(s)	55, 424, 499, 2003
EaeI	YGGCCR	1 cut(s)	2050
Eam1104I	CTCTTC	4 cut(s)	120, 764, 842, 1032
EarI	CTCTTC	4 cut(s)	120, 764, 842, 1032
EciI	GGCGGA	3 cut(s)	93, 273, 677
Eco130I	CCWWGG	3 cut(s)	1310, 1793, 2177
Eco147I	AGGCCT	1 cut(s)	272
Eco24I	GRGCYC	1 cut(s)	1364
Eco31I	GGTCTC	2 cut(s)	525, 1699
Eco47I	GGWCC	5 cut(s)	301, 1501, 1661, 1799, 2126
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	3 cut(s)	167, 751, 1598
EcoNI	CCTNNNNNAGG	1 cut(s)	1851
EcoO109I	RGGNCCY	2 cut(s)	301, 1799
EcoRI	GAATTC	1 cut(s)	150
EcoRII	CCWGG	9 cut(s)	243, 718, 1351, 1657, 1738, 1852, 1927, 1984, 2134
EcoT14I	CCWWGG	3 cut(s)	1310, 1793, 2177
EcoT38I	GRGCYC	1 cut(s)	1364
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
ErhI	CCWWGG	3 cut(s)	1310, 1793, 2177
Esp3I	CGTCTC	1 cut(s)	308
FaeI	CATG	7 cut(s)	409, 893, 1585, 1867, 2060, 2181, 2266
FaqI	GGGAC	5 cut(s)	314, 750, 1039, 1249, 1812
FatI	CATG	7 cut(s)	405, 889, 1581, 1863, 2056, 2177, 2262
FauI	CCCGC	1 cut(s)	303
FauNDI	CATATG	1 cut(s)	2077
FokI	GGATG	9 cut(s)	484, 787, 952, 980, 1137, 1211, 1335, 1570, 1708
FriOI	GRGCYC	1 cut(s)	1364
FspBI	CTAG	4 cut(s)	134, 1335, 1380, 1770
GlaI	GCGC	5 cut(s)	124, 238, 340, 585, 1285
GsaI	CCCAGC	4 cut(s)	310, 1070, 1329, 1729
GsuI	CTGGAG	5 cut(s)	259, 1770, 1821, 1836, 1968
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	6 cut(s)	272, 673, 750, 1746, 2052, 2183
HgaI	GACGC	1 cut(s)	322
HhaI	GCGC	5 cut(s)	125, 239, 341, 586, 1286
Hin1I	GRCGYC	2 cut(s)	237, 333
Hin1II	CATG	7 cut(s)	409, 893, 1585, 1867, 2060, 2181, 2266
Hin6I	GCGC	5 cut(s)	123, 237, 339, 584, 1284
HinP1I	GCGC	5 cut(s)	123, 237, 339, 584, 1284
HincII	GTYRAC	2 cut(s)	1318, 1889
HindII	GTYRAC	2 cut(s)	1318, 1889
HindIII	AAGCTT	2 cut(s)	438, 680
HinfI	GANTC	6 cut(s)	163, 191, 388, 738, 854, 1247
HpaI	GTTAAC	1 cut(s)	1318
HphI	GGTGA	5 cut(s)	397, 835, 1073, 1151, 1674
Hpy166II	GTNNAC	3 cut(s)	1318, 1889, 1910
Hpy188I	TCNGA	7 cut(s)	88, 627, 874, 1080, 1557, 1622, 1999
Hpy188III	TCNNGA	7 cut(s)	59, 167, 428, 458, 1012, 1095, 1433
Hpy8I	GTNNAC	3 cut(s)	1318, 1889, 1910
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	4 cut(s)	117, 503, 775, 1168
HpyCH4III	ACNGT	4 cut(s)	360, 1759, 1907, 2237
HpyCH4IV	ACGT	4 cut(s)	1106, 1465, 1939, 1952
HpyF3I	CTNAG	6 cut(s)	180, 232, 624, 795, 1224, 1257
HpySE526I	ACGT	4 cut(s)	1106, 1465, 1939, 1952
Hsp92I	GRCGYC	2 cut(s)	237, 333
Hsp92II	CATG	7 cut(s)	409, 893, 1585, 1867, 2060, 2181, 2266
HspAI	GCGC	5 cut(s)	123, 237, 339, 584, 1284
KasI	GGCGCC	1 cut(s)	236
KflI	GGGWCCC	2 cut(s)	301, 1799
KspAI	GTTAAC	1 cut(s)	1318
Kzo9I	GATC	4 cut(s)	55, 424, 499, 2003
LmnI	GCTCC	3 cut(s)	373, 532, 1846
Lsp1109I	GCAGC	8 cut(s)	291, 303, 381, 970, 1006, 1009, 1885, 2104
LweI	GCATC	4 cut(s)	463, 916, 1159, 1943
MabI	ACCWGGT	1 cut(s)	2134
MaeI	CTAG	4 cut(s)	134, 1335, 1380, 1770
MaeII	ACGT	4 cut(s)	1106, 1465, 1939, 1952
MaeIII	GTNAC	5 cut(s)	354, 837, 1092, 1680, 1948
MalI	GATC	4 cut(s)	57, 426, 501, 2005
MbiI	CCGCTC	1 cut(s)	330
MboI	GATC	4 cut(s)	55, 424, 499, 2003
MboII	GAAGA	8 cut(s)	107, 471, 781, 859, 1049, 1201, 2192, 2205
MfeI	CAATTG	1 cut(s)	1572
MflI	RGATCY	2 cut(s)	424, 2003
MhlI	GDGCHC	4 cut(s)	1074, 1364, 1419, 1912
MlsI	TGGCCA	1 cut(s)	2052
MluCI	AATT	9 cut(s)	150, 419, 432, 555, 615, 1402, 1572, 1730, 1972
MluNI	TGGCCA	1 cut(s)	2052
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	185, 732
MmeI	TCCRAC	2 cut(s)	37, 1178
Mox20I	TGGCCA	1 cut(s)	2052
MscI	TGGCCA	1 cut(s)	2052
MseI	TTAA	8 cut(s)	564, 633, 651, 1110, 1317, 1497, 1955, 2223
MslI	CAYNNNNRTG	2 cut(s)	704, 1080
Msp20I	TGGCCA	1 cut(s)	2052
MspA1I	CMGCKG	2 cut(s)	310, 394
MunI	CAATTG	1 cut(s)	1572
Mva1269I	GAATGC	2 cut(s)	1087, 1336
MvaI	CCWGG	9 cut(s)	245, 720, 1353, 1659, 1740, 1854, 1929, 1986, 2136
MvnI	CGCG	3 cut(s)	341, 586, 1013
NarI	GGCGCC	1 cut(s)	237
NciI	CCSGG	7 cut(s)	160, 399, 506, 1505, 1691, 1884, 2124
NcoI	CCATGG	1 cut(s)	2177
NdeI	CATATG	1 cut(s)	2077
NdeII	GATC	4 cut(s)	55, 424, 499, 2003
NheI	GCTAGC	1 cut(s)	1334
NlaIII	CATG	7 cut(s)	409, 893, 1585, 1867, 2060, 2181, 2266
NmuCI	GTSAC	5 cut(s)	354, 837, 1092, 1680, 1948
NruI	TCGCGA	1 cut(s)	1013
NspI	RCATGY	2 cut(s)	893, 2060
NspV	TTCGAA	1 cut(s)	857
PaeR7I	CTCGAG	1 cut(s)	1598
PaqCI	CACCTGC	1 cut(s)	2122
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	2 cut(s)	1087, 1336
PfeI	GAWTC	4 cut(s)	163, 388, 854, 1247
PfoI	TCCNGGA	3 cut(s)	158, 1351, 1657
PinAI	ACCGGT	1 cut(s)	202
PleI	GAGTC	2 cut(s)	185, 732
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	2 cut(s)	185, 732
PpuMI	RGGWCCY	2 cut(s)	301, 1799
PshBI	ATTAAT	1 cut(s)	564
Psp1406I	AACGTT	1 cut(s)	1106
Psp5II	RGGWCCY	2 cut(s)	301, 1799
Psp6I	CCWGG	9 cut(s)	243, 718, 1351, 1657, 1738, 1852, 1927, 1984, 2134
PspFI	CCCAGC	4 cut(s)	306, 1066, 1325, 1725
PspGI	CCWGG	9 cut(s)	243, 718, 1351, 1657, 1738, 1852, 1927, 1984, 2134
PspPI	GGNCC	8 cut(s)	301, 749, 1501, 1661, 1745, 1799, 2126, 2181
PspPPI	RGGWCCY	2 cut(s)	301, 1799
PspXI	VCTCGAGB	1 cut(s)	1598
PsrI	GAACNNNNNNTAC	2 cut(s)	2243, 2275
PstI	CTGCAG	1 cut(s)	2221
PsuI	RGATCY	2 cut(s)	424, 2003
PvuII	CAGCTG	1 cut(s)	394
RruI	TCGCGA	1 cut(s)	1013
RseI	CAYNNNNRTG	2 cut(s)	704, 1080
SaqAI	TTAA	8 cut(s)	564, 633, 651, 1110, 1317, 1497, 1955, 2223
Sau3AI	GATC	4 cut(s)	55, 424, 499, 2003
Sau96I	GGNCC	8 cut(s)	301, 749, 1501, 1661, 1745, 1799, 2126, 2181
ScaI	AGTACT	1 cut(s)	2191
SchI	GAGTC	2 cut(s)	185, 732
SduI	GDGCHC	4 cut(s)	1074, 1364, 1419, 1912
SexAI	ACCWGGT	1 cut(s)	2134
SfaNI	GCATC	4 cut(s)	463, 916, 1159, 1943
SfcI	CTRYAG	1 cut(s)	2217
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	1598
SfuI	TTCGAA	1 cut(s)	857
SinI	GGWCC	5 cut(s)	301, 1501, 1661, 1799, 2126
SlaI	CTCGAG	1 cut(s)	1598
SmiMI	CAYNNNNRTG	2 cut(s)	704, 1080
SmlI	CTYRAG	4 cut(s)	458, 1001, 1598, 1696
SmoI	CTYRAG	4 cut(s)	458, 1001, 1598, 1696
Sse9I	AATT	9 cut(s)	150, 419, 432, 555, 615, 1402, 1572, 1730, 1972
SseBI	AGGCCT	1 cut(s)	272
SspDI	GGCGCC	1 cut(s)	236
SspI	AATATT	1 cut(s)	1477
SspMI	CTAG	4 cut(s)	134, 1335, 1380, 1770
StuI	AGGCCT	1 cut(s)	272
StyI	CCWWGG	3 cut(s)	1310, 1793, 2177
TaaI	ACNGT	4 cut(s)	360, 1759, 1907, 2237
TaiI	ACGT	4 cut(s)	1109, 1468, 1942, 1955
TaqI	TCGA	5 cut(s)	194, 366, 857, 1599, 1606
TasI	AATT	9 cut(s)	150, 419, 432, 555, 615, 1402, 1572, 1730, 1972
TatI	WGTACW	4 cut(s)	696, 1340, 1407, 2189
TauI	GCSGC	7 cut(s)	67, 285, 288, 291, 333, 676, 932
TfiI	GAWTC	4 cut(s)	163, 388, 854, 1247
Tru1I	TTAA	8 cut(s)	564, 633, 651, 1110, 1317, 1497, 1955, 2223
Tru9I	TTAA	8 cut(s)	564, 633, 651, 1110, 1317, 1497, 1955, 2223
TscAI	CASTG	4 cut(s)	125, 1176, 1912, 1953
TseFI	GTSAC	5 cut(s)	354, 837, 1092, 1680, 1948
TseI	GCWGC	8 cut(s)	279, 291, 394, 958, 994, 997, 1898, 2117
Tsp45I	GTSAC	5 cut(s)	354, 837, 1092, 1680, 1948
TspDTI	ATGAA	4 cut(s)	63, 394, 1598, 2251
TspGWI	ACGGA	2 cut(s)	332, 1806
TspRI	CASTG	4 cut(s)	125, 1176, 1912, 1953
VneI	GTGCAC	1 cut(s)	1908
VpaK11BI	GGWCC	5 cut(s)	301, 1501, 1661, 1799, 2126
VspI	ATTAAT	1 cut(s)	564
XagI	CCTNNNNNAGG	1 cut(s)	1851
XapI	RAATTY	3 cut(s)	150, 432, 1402
XceI	RCATGY	2 cut(s)	893, 2060
XhoI	CTCGAG	1 cut(s)	1598
XspI	CTAG	4 cut(s)	134, 1335, 1380, 1770
ZrmI	AGTACT	1 cut(s)	2191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.