FvH4_7g29541

Actin depolymerisation factor/cofilin -like domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0008202
Physical Location & Seq
Reverse (-)
21703079 .. 21704295
1217 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29541.t1

Sequence Viewer

Length: 426 bp
ATGGCTTCGTCGTCTGGCTTTTCTGTTTCTGGCCTTGCAGTGAATGACGAGTGCAAGCAGAAGTTCTTGGAGCTAAAAGCCAAGAGAAACCATCGGTTCATTGTATTCAAGATTGAAAATCAAGAGGTGGTGGTAGAGAAACTTGGAGAACCAGATGAAACGTACGATGATTTCACAGCATCGCTGCCAGCGGACGAGTGCCGCTATGCTGTGTTTGATCTTGATTTCACCACTGATGAAAACTGCCAGAAGAGCAAGATTTACTTCATTGCATGGTCACCTGATACATCAAAGGTGAGAATGAAGATGGTGTATGCTAGCTCCAAAGAGAGAATCAAGAGAGAATTGGATGGCATTCAAGTTGAATTGCAAGCAACTGATCCAAGTGAATTGAGCTTTGACATTATTAAATCTCGAGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133
Pfam Domains
Protein Families
Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

142

Amino Acids

16.12

Weight (kDa)

5.0

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cofilin_ADF PF00241 11 - 139 6.7e-43 Cofilin/tropomyosin-type actin-binding protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 191, 202
AclWI GGATC 1 cut(s) 374
AfaI GTAC 1 cut(s) 164
AgsI TTSAA 4 cut(s) 109, 116, 359, 365
AluBI AGCT 4 cut(s) 73, 321, 396, 419
AluI AGCT 4 cut(s) 73, 321, 396, 419
Alw21I GWGCWC 1 cut(s) 421
AlwI GGATC 1 cut(s) 374
Ama87I CYCGRG 1 cut(s) 414
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 184
AsuHPI GGTGA 3 cut(s) 220, 270, 307
AsuNHI GCTAGC 1 cut(s) 317
AvaI CYCGRG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 1 cut(s) 171
BccI CCATC 3 cut(s) 99, 301, 344
BfaI CTAG 1 cut(s) 318
BisI GCNGC 2 cut(s) 185, 202
BlsI GCNGC 2 cut(s) 186, 203
BmeT110I CYCGRG 1 cut(s) 414
BmsI GCATC 1 cut(s) 188
BmtI GCTAGC 1 cut(s) 321
Bse3DI GCAATG 1 cut(s) 267
BseGI GGATG 1 cut(s) 355
BseMI GCAATG 1 cut(s) 267
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 414
BsiWI CGTACG 1 cut(s) 162
BsmI GAATGC 1 cut(s) 354
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 2 cut(s) 217, 379
BspACI CCGC 2 cut(s) 191, 202
BspANI GGCC 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 321
BspPI GGATC 1 cut(s) 374
BspQI GCTCTTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 267
BssMI GATC 2 cut(s) 217, 379
Bst6I CTCTTC 1 cut(s) 245
BstC8I GCNNGC 4 cut(s) 56, 189, 319, 372
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 1 cut(s) 355
BstKTI GATC 2 cut(s) 220, 382
BstMBI GATC 2 cut(s) 217, 379
BstMWI GCNNNNNNNGC 1 cut(s) 252
BstPI GGTNACC 1 cut(s) 276
BstV1I GCAGC 1 cut(s) 171
BsuRI GGCC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 355
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 45, 231
Cac8I GCNNGC 4 cut(s) 56, 189, 319, 372
Csp6I GTAC 1 cut(s) 163
CviAII CATG 1 cut(s) 273
CviJI RGCY 8 cut(s) 5, 18, 33, 73, 80, 321, 396, 419
CviKI_1 RGCY 8 cut(s) 5, 18, 33, 73, 80, 321, 396, 419
CviQI GTAC 1 cut(s) 163
DpnI GATC 2 cut(s) 219, 381
DpnII GATC 2 cut(s) 217, 379
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 421
Eco53kI GAGCTC 1 cut(s) 419
Eco88I CYCGRG 1 cut(s) 414
Eco91I GGTNACC 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 419
EcoO65I GGTNACC 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 1 cut(s) 276
FaiI YATR 3 cut(s) 207, 274, 315
FalI AAGNNNNNCTT 2 cut(s) 248, 280
FatI CATG 1 cut(s) 272
Fnu4HI GCNGC 2 cut(s) 185, 202
FokI GGATG 1 cut(s) 362
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 2 cut(s) 185, 202
FspBI CTAG 1 cut(s) 318
GluI GCNGC 2 cut(s) 185, 202
HaeIII GGCC 1 cut(s) 33
Hin1II CATG 1 cut(s) 276
HinfI GANTC 1 cut(s) 333
HphI GGTGA 3 cut(s) 220, 270, 307
Hpy188III TCNNGA 5 cut(s) 109, 122, 221, 337, 414
Hpy99I CGWCG 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 4 cut(s) 38, 54, 272, 370
HpyF10VI GCNNNNNNNGC 1 cut(s) 252
HpySE526I ACGT 1 cut(s) 161
Hsp92II CATG 1 cut(s) 276
Kzo9I GATC 2 cut(s) 217, 379
LguI GCTCTTC 1 cut(s) 245
LmnI GCTCC 2 cut(s) 70, 326
LpnPI CCDG 5 cut(s) 15, 165, 201, 260, 294
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 219, 381
MboI GATC 2 cut(s) 217, 379
MboII GAAGA 2 cut(s) 262, 316
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 3 cut(s) 344, 365, 389
MnlI CCTC 1 cut(s) 118
MseI TTAA 2 cut(s) 408, 424
MspA1I CMGCKG 1 cut(s) 191
Mva1269I GAATGC 1 cut(s) 354
MwoI GCNNNNNNNGC 1 cut(s) 252
NdeII GATC 2 cut(s) 217, 379
NheI GCTAGC 1 cut(s) 317
NlaIII CATG 1 cut(s) 276
NmuCI GTSAC 1 cut(s) 276
PaeR7I CTCGAG 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 245
PctI GAATGC 1 cut(s) 354
PfeI GAWTC 1 cut(s) 333
Pfl23II CGTACG 1 cut(s) 162
PkrI GCNGC 2 cut(s) 186, 203
Psp124BI GAGCTC 1 cut(s) 421
PspEI GGTNACC 1 cut(s) 276
PspLI CGTACG 1 cut(s) 162
RsaI GTAC 1 cut(s) 164
RsaNI GTAC 1 cut(s) 163
SacI GAGCTC 1 cut(s) 421
SapI GCTCTTC 1 cut(s) 245
SaqAI TTAA 2 cut(s) 408, 424
SatI GCNGC 2 cut(s) 185, 202
Sau3AI GATC 2 cut(s) 217, 379
SduI GDGCHC 1 cut(s) 421
SetI ASST 8 cut(s) 75, 129, 164, 283, 297, 323, 398, 421
SfaNI GCATC 1 cut(s) 188
Sfr274I CTCGAG 1 cut(s) 414
SlaI CTCGAG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 414
SmoI CTYRAG 1 cut(s) 414
Sse9I AATT 3 cut(s) 344, 365, 389
SsiI CCGC 2 cut(s) 191, 202
SspMI CTAG 1 cut(s) 318
SstI GAGCTC 1 cut(s) 421
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 415
TasI AATT 3 cut(s) 344, 365, 389
TauI GCSGC 1 cut(s) 204
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 408, 424
Tru9I TTAA 2 cut(s) 408, 424
TscAI CASTG 2 cut(s) 45, 238
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 5 cut(s) 88, 171, 252, 256, 317
TspRI CASTG 2 cut(s) 45, 238
XhoI CTCGAG 1 cut(s) 414
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.