Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Forward (+)

25305361 .. 25306172

Gene Structure 812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g24670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGTGAGCAAGAGACAGAGAGAAGCTCGCAGGAAATTCAGAGCAGAACACCCAGAACTGGCTAAACAGCCAACGCCCCCAAAAGACCCAACCAAGAAGAAAGAGAAGAAGAACTCCTTCAAGCGCAAGAAGGCACCCAGCGACCCAGCCAAATCCAGCAAAAACCCCCATAGAAAACACCCCCTCAGAGTGCCCGGCATGAAGCCTGGAGATAGCTGCTTCATCTGTAAATCCACCGAACATATCGCCAAGCTCTGCCCCGAGAAAGTTCAGTGGGACAAGCACAAGATATGTTTATATTGTCGCCAACGTGGGCATAGCATCAAGAATTGCCTTAACAAGAAAGACGATTCCGTGGCTGAGAAGTTATGTTATAATTGTGGGGAAAATGGGCATTCGCTTTCTAATTGCCCCTATCCTCTTGAAGACGGTAACCCTTCTAATCATTTAGAGTGCATCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

155

Amino Acids

17.68

Weight (kDa)

9.7

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	121, 425
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	3 cut(s)	26, 216, 253
AluI	AGCT	3 cut(s)	26, 216, 253
Alw26I	GTCTC	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	260
ApeKI	GCWGC	1 cut(s)	216
ApoI	RAATTY	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	126
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	203
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	1 cut(s)	7
BisI	GCNGC	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	195, 207
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	2 cut(s)	195, 207
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	58
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	354
BseLI	CCNNNNNNNGG	1 cut(s)	58
BseMII	CTCAG	2 cut(s)	199, 351
BseNI	ACTGG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	195
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	2 cut(s)	137, 145
BshNI	GGYRCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	195
BspCNI	CTCAG	2 cut(s)	198, 352
BspLI	GGNNCC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	354
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	2 cut(s)	185, 360
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	7
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	193, 205
BstSLI	GKGCMC	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	432
BtgI	CCRYGG	1 cut(s)	354
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	126
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	8 cut(s)	26, 62, 70, 149, 205, 216, 253, 359
CviKI_1	RGCY	8 cut(s)	26, 62, 70, 149, 205, 216, 253, 359
DdeI	CTNAG	2 cut(s)	185, 360
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	431
EcoO65I	GGTNACC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	202
FaiI	YATR	8 cut(s)	171, 200, 243, 292, 298, 318, 370, 375
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	217
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	217
GsaI	CCCAGC	2 cut(s)	141, 149
GsuI	CTGGAG	1 cut(s)	228
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	202
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	2 cut(s)	41, 188
Hpy188III	TCNNGA	2 cut(s)	325, 422
HpyAV	CCTTC	3 cut(s)	124, 127, 447
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	1 cut(s)	456
HpyF3I	CTNAG	2 cut(s)	185, 360
HpySE526I	ACGT	1 cut(s)	310
Hsp92II	CATG	1 cut(s)	202
HspAI	GCGC	1 cut(s)	124
LpnPI	CCDG	9 cut(s)	16, 44, 66, 151, 159, 169, 192, 208, 219
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	1 cut(s)	330
MaeII	ACGT	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	431
MboII	GAAGA	4 cut(s)	109, 118, 121, 437
MhlI	GDGCHC	1 cut(s)	195
MluCI	AATT	4 cut(s)	35, 328, 376, 406
MnlI	CCTC	2 cut(s)	194, 429
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	336
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	195, 207
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	207
NciI	CCSGG	1 cut(s)	195
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	1 cut(s)	135
PctI	GAATGC	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	218
PsiI	TTATAA	1 cut(s)	375
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	431
PspFI	CCCAGC	2 cut(s)	137, 145
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	1 cut(s)	217
ScrFI	CCNGG	2 cut(s)	195, 207
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	4 cut(s)	28, 218, 255, 313
SfaNI	GCATC	1 cut(s)	330
Sse9I	AATT	4 cut(s)	35, 328, 376, 406
StyD4I	CCNGG	2 cut(s)	193, 205
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	313
TasI	AATT	4 cut(s)	35, 328, 376, 406
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	278
TseI	GCWGC	1 cut(s)	216
TspDTI	ATGAA	2 cut(s)	211, 215
TspGWI	ACGGA	1 cut(s)	343
TspRI	CASTG	1 cut(s)	278
XapI	RAATTY	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.