Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Reverse (-)

29780042 .. 29782908

Gene Structure 2867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1201700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGTGAGCAAGAGACAGAGAGAAGCTCGGAAGAAATTCCGGGTAGAACACCCGGAACTGGCTAAACAGCCGACTCCGCCCAAAGACCCAACCAGGAAGAAGGACAAGAAGAAGAGCTCGTTCAAGCGCAAAAAAGCACCCAGCGACCCAGCCAAACCCAGCAAAAACCCCCATAGAAAACACCCCCTCAGAGTCCCCGGCATGAAGCCCGGCGACAGCTGCTTCATCTGTAAATCCACCGAGCATATCGCCAAGCTCTGCCCCGAGAAAGTTCAGTGGGATAAGCACAAGATATGTTTATATTGTCGGCAACGTGGGCATAGCATCAAGAATTGCCTCAACAAGAAAGACGATTCTGTGGCTGAGAAGTTATGTTATAATTGTGGGGAAAATGGACATTCGCTTTCTAACTGCCCCTACCCTCTTGAAGACGGAGGAACTAAATTTGCCAAGTGCTTCATCTGTAATGGGACGGGTCACTTGAGCAAGAACTGCCCTGAAAATACTCATGGGATTTATCCAAAGGGTGGTAGTTGTAAAGTTTGTGGGGGTGTAACACACTTGGCGAAGGATTGTCCTAACAAAAGCAACAGTTCGATGTCTGCTGGTAGATCTCCTCACTCGTGGAAAGAAAGTGATCTGCCAAGAGGAAAGGTTACAAAATTTCTCAGTGGAGACGACCTTGAGGACGATTTCAGTTTCATAGATGAAAAGCAAAGTGGCGGTACACAACACAAGTCTGCAGATGTAGTTGGTTCTGCATCTCTTTCACAAGAAAGTACTGTAAAATCCAAGAAGAAGAAACAAGGACCCAAAGTAGTGAATTTCGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

279

Amino Acids

30.76

Weight (kDa)

9.61

Isoelectric Point (pI)

39.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	378
AccB7I	CCANNNNNTGG	1 cut(s)	527
AciI	CCGC	2 cut(s)	77, 723
AcsI	RAATTY	4 cut(s)	35, 443, 662, 823
AfaI	GTAC	2 cut(s)	727, 781
AfiI	CCNNNNNNNGG	2 cut(s)	58, 527
AgsI	TTSAA	2 cut(s)	124, 428
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	4 cut(s)	26, 117, 219, 256
AluI	AGCT	4 cut(s)	26, 117, 219, 256
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	7, 669
Ama87I	CYCGRG	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	4 cut(s)	35, 443, 662, 823
Asp700I	GAANNNNTTC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	809
AsuC2I	CCSGG	4 cut(s)	41, 53, 198, 210
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	809
BanII	GRGCYC	1 cut(s)	119
BauI	CACGAG	1 cut(s)	622
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	1 cut(s)	206
BciT130I	CCWGG	1 cut(s)	94
BcnI	CCSGG	4 cut(s)	41, 53, 198, 210
BcoDI	GTCTC	2 cut(s)	7, 669
BfmI	CTRYAG	1 cut(s)	741
BglII	AGATCT	1 cut(s)	611
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmcAI	AGTACT	1 cut(s)	781
Bme1390I	CCNGG	5 cut(s)	41, 53, 94, 198, 210
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	809
BmiI	GGNNCC	1 cut(s)	811
BmrFI	CCNGG	5 cut(s)	41, 53, 94, 198, 210
BmsI	GCATC	2 cut(s)	333, 770
BpiI	GAAGAC	1 cut(s)	435
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpuEI	CTTGAG	2 cut(s)	502, 704
BpuMI	CCSGG	4 cut(s)	41, 53, 198, 210
BsaJI	CCNNGG	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 527
Bse1I	ACTGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	196
BseLI	CCNNNNNNNGG	2 cut(s)	58, 527
BseMII	CTCAG	3 cut(s)	202, 354, 682
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	206
BseYI	CCCAGC	3 cut(s)	140, 148, 158
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	263
BsiSI	CCGG	4 cut(s)	40, 53, 198, 210
BslFI	GGGAC	2 cut(s)	179, 484
BslI	CCNNNNNNNGG	2 cut(s)	58, 527
BsmAI	GTCTC	2 cut(s)	7, 669
BsmBI	CGTCTC	1 cut(s)	669
BsmFI	GGGAC	2 cut(s)	179, 484
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	611, 637
BspACI	CCGC	2 cut(s)	77, 723
BspCNI	CTCAG	3 cut(s)	201, 355, 681
BspLI	GGNNCC	1 cut(s)	811
BspMAI	CTGCAG	1 cut(s)	745
BspQI	GCTCTTC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	611, 637
BssSI	CACGAG	1 cut(s)	622
Bst2BI	CACGAG	1 cut(s)	622
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	593, 784
Bst6I	CTCTTC	1 cut(s)	107
BstAPI	GCANNNNNTGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	188, 363, 668
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	614, 640
BstMAI	GTCTC	2 cut(s)	7, 669
BstMBI	GATC	2 cut(s)	611, 637
BstMWI	GCNNNNNNNGC	4 cut(s)	76, 219, 316, 492
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	5 cut(s)	39, 51, 92, 196, 208
BstSFI	CTRYAG	1 cut(s)	741
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	611
BtsIMutI	CAGTG	2 cut(s)	281, 676
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	809
Csp6I	GTAC	2 cut(s)	726, 780
CviAII	CATG	2 cut(s)	202, 509
CviJI	RGCY	9 cut(s)	26, 62, 70, 117, 152, 208, 219, 256, 362
CviKI_1	RGCY	9 cut(s)	26, 62, 70, 117, 152, 208, 219, 256, 362
CviQI	GTAC	2 cut(s)	726, 780
DdeI	CTNAG	3 cut(s)	188, 363, 668
DpnI	GATC	2 cut(s)	613, 639
DpnII	GATC	2 cut(s)	611, 637
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	66
Ecl136II	GAGCTC	1 cut(s)	117
Eco24I	GRGCYC	1 cut(s)	119
Eco47I	GGWCC	1 cut(s)	809
Eco53kI	GAGCTC	1 cut(s)	117
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	117
EcoO109I	RGGNCCY	1 cut(s)	809
EcoRII	CCWGG	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	119
Esp3I	CGTCTC	1 cut(s)	669
FaeI	CATG	2 cut(s)	205, 512
FaqI	GGGAC	2 cut(s)	179, 484
FatI	CATG	2 cut(s)	201, 508
Fnu4HI	GCNGC	1 cut(s)	220
FriOI	GRGCYC	1 cut(s)	119
Fsp4HI	GCNGC	1 cut(s)	220
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	220
GsaI	CCCAGC	3 cut(s)	144, 152, 162
HapII	CCGG	4 cut(s)	40, 53, 198, 210
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	2 cut(s)	205, 512
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HinfI	GANTC	3 cut(s)	73, 192, 353
HpaII	CCGG	4 cut(s)	40, 53, 198, 210
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	2 cut(s)	30, 191
Hpy188III	TCNNGA	2 cut(s)	328, 425
Hpy8I	GTNNAC	1 cut(s)	728
HpyAV	CCTTC	2 cut(s)	94, 562
HpyCH4III	ACNGT	2 cut(s)	593, 784
HpyCH4IV	ACGT	1 cut(s)	313
HpyCH4V	TGCA	2 cut(s)	743, 761
HpyF10VI	GCNNNNNNNGC	4 cut(s)	76, 219, 316, 492
HpyF3I	CTNAG	3 cut(s)	188, 363, 668
HpySE526I	ACGT	1 cut(s)	313
Hsp92II	CATG	2 cut(s)	205, 512
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	611, 637
LguI	GCTCTTC	1 cut(s)	107
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	2 cut(s)	333, 770
MaeII	ACGT	1 cut(s)	313
MaeIII	GTNAC	3 cut(s)	476, 553, 655
MalI	GATC	2 cut(s)	613, 639
MboI	GATC	2 cut(s)	611, 637
MboII	GAAGA	7 cut(s)	43, 109, 121, 124, 440, 808, 811
MflI	RGATCY	1 cut(s)	611
MhlI	GDGCHC	1 cut(s)	119
MluCI	AATT	6 cut(s)	35, 331, 379, 443, 662, 823
MlyI	GAGTC	2 cut(s)	67, 201
MmeI	TCCRAC	1 cut(s)	811
MnlI	CCTC	7 cut(s)	197, 347, 428, 432, 627, 641, 679
MroXI	GAANNNNTTC	1 cut(s)	35
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	4 cut(s)	40, 53, 198, 210
MspR9I	CCNGG	5 cut(s)	41, 53, 94, 198, 210
MvaI	CCWGG	1 cut(s)	94
MwoI	GCNNNNNNNGC	4 cut(s)	76, 219, 316, 492
NciI	CCSGG	4 cut(s)	41, 53, 198, 210
NdeII	GATC	2 cut(s)	611, 637
NlaIII	CATG	2 cut(s)	205, 512
NlaIV	GGNNCC	1 cut(s)	811
NmuCI	GTSAC	1 cut(s)	476
PciSI	GCTCTTC	1 cut(s)	107
PdmI	GAANNNNTTC	1 cut(s)	35
PfeI	GAWTC	1 cut(s)	353
PflMI	CCANNNNNTGG	1 cut(s)	527
PkrI	GCNGC	1 cut(s)	221
PleI	GAGTC	2 cut(s)	67, 200
PpsI	GAGTC	2 cut(s)	67, 200
PpuMI	RGGWCCY	1 cut(s)	809
PsiI	TTATAA	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	809
Psp6I	CCWGG	1 cut(s)	92
PspFI	CCCAGC	3 cut(s)	140, 148, 158
PspGI	CCWGG	1 cut(s)	92
PspN4I	GGNNCC	1 cut(s)	811
PspPI	GGNCC	1 cut(s)	809
PspPPI	RGGWCCY	1 cut(s)	809
PstI	CTGCAG	1 cut(s)	745
PsuI	RGATCY	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	727, 781
RsaNI	GTAC	2 cut(s)	726, 780
SacI	GAGCTC	1 cut(s)	119
SapI	GCTCTTC	1 cut(s)	107
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	611, 637
Sau96I	GGNCC	1 cut(s)	809
ScaI	AGTACT	1 cut(s)	781
SchI	GAGTC	2 cut(s)	67, 201
ScrFI	CCNGG	5 cut(s)	41, 53, 94, 198, 210
SduI	GDGCHC	1 cut(s)	119
SetI	ASST	7 cut(s)	28, 119, 221, 258, 316, 657, 684
SfaNI	GCATC	2 cut(s)	333, 770
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	809
SmlI	CTYRAG	2 cut(s)	481, 683
SmoI	CTYRAG	2 cut(s)	481, 683
Sse9I	AATT	6 cut(s)	35, 331, 379, 443, 662, 823
SsiI	CCGC	2 cut(s)	77, 723
SstI	GAGCTC	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	39, 51, 92, 196, 208
TaaI	ACNGT	2 cut(s)	593, 784
TaiI	ACGT	1 cut(s)	316
TaqI	TCGA	1 cut(s)	596
TasI	AATT	6 cut(s)	35, 331, 379, 443, 662, 823
TatI	WGTACW	1 cut(s)	779
TfiI	GAWTC	1 cut(s)	353
TscAI	CASTG	2 cut(s)	281, 676
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	219
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	5 cut(s)	214, 218, 448, 691, 723
TspGWI	ACGGA	1 cut(s)	447
TspRI	CASTG	2 cut(s)	281, 676
Van91I	CCANNNNNTGG	1 cut(s)	527
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	4 cut(s)	35, 443, 662, 823
XmnI	GAANNNNTTC	1 cut(s)	35
ZrmI	AGTACT	1 cut(s)	781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.