Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Forward (+)

3609361 .. 3612702

Gene Structure 3342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAAGCCTGGTGATAGCTGCTTCATTTGTAAAGGCACTGACCATATTGCCAAGCTTTGCCCTGAGAAAGCTGAGTGGGATAGGCACAAGATATGCTTGTTTTGTCGACAACGCGGGCATAGTCTGAAGAATTGCCAAAAGAAGAATGAGAATGATATGGAGGCGAAGTTATGTTATAATTGTGGGGAAACTGGGCATTCGCTTTCGAGATGCCTCTTACCTCTTCAAGATGGAGGAACTAAATTTGCCAAGTGCTTCGTCTGTAACGAGACTGGTCACCTGAGCAAGGACTGTCCTAAAAACTCTCATGGGATTTATCCAAAGGGTGGTTCTTGTAAAATATGTGGCGGTGTAACACATTTGGCACGAGACTGTCCTAACAAAGACAGCAGGAATTCAATAGGTTCTGGCAATTCTAATCCCAAATGGAATGAACCAAGAGGAAAGGTTACCAAATTTGCGAGTGGAGATGATCTTGAGGATGATTTCAGTTTCATAGGTGAGAAGACTGTTGCCAAAACAGTAGACGAGTCTGCCAATGTAGTTGGTACTGCTTCTCTTCCACAAGAAAGTAACGCCGCCTCGCCTGGCTTTGCAGTGTCTGGCCTAGCCGTGAATGAGGAGTGCAAGCAGAAGTTCTTGGAGCTAAAAGCCAAGAGAAACCATCGTTTCATTATATTCAAGATTGATAAGCAAGAAGTGGTGGTAGAGAAACTTGGAGAGCCAGACGAAACTTACGATGATTTCACAGCCTCGCTGCCTGCGGAGGAGTGCCGCTATGCTGTGTTTGATCTTGATTTCACCACTATTGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCACCTGATACATCAAAGGTGAGAATGAAGATGGTGTATGCTAGCTCCAAAGATAGATTCAAGAGAGAATTGGATGGCATTCAAGTTGAGTTGCAAGCAACTGATCCAAGTGAATTGAGCTTTGACATTATAAAATCCCGAGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

332

Amino Acids

36.95

Weight (kDa)

7.43

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	84 - 100	3.7e-06	Zinc knuckle
Cofilin_ADF	PF00241	203 - 330	4.8e-42	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	177, 980
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccI	GTMKAC	2 cut(s)	106, 525
AccII	CGCG	1 cut(s)	114
AciI	CCGC	5 cut(s)	114, 348, 579, 764, 775
AclWI	GGATC	1 cut(s)	947
AcsI	RAATTY	3 cut(s)	242, 394, 455
AcuI	CTGAAG	1 cut(s)	146
AfaI	GTAC	1 cut(s)	550
AfiI	CCNNNNNNNGG	2 cut(s)	286, 326
AgsI	TTSAA	5 cut(s)	227, 399, 682, 910, 932
AjnI	CCWGG	2 cut(s)	7, 586
AjuI	GAANNNNNNNTTGG	4 cut(s)	313, 345, 890, 922
AluBI	AGCT	7 cut(s)	18, 55, 71, 646, 894, 969, 992
AluI	AGCT	7 cut(s)	18, 55, 71, 646, 894, 969, 992
Alw21I	GWGCWC	1 cut(s)	994
Alw26I	GTCTC	2 cut(s)	263, 363
AlwI	GGATC	1 cut(s)	947
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	987
AoxI	GGCC	1 cut(s)	604
ApeKI	GCWGC	2 cut(s)	18, 757
ApoI	RAATTY	3 cut(s)	242, 394, 455
AsuHPI	GGTGA	6 cut(s)	23, 269, 512, 793, 843, 880
AsuNHI	GCTAGC	1 cut(s)	890
AvaI	CYCGRG	1 cut(s)	987
BanII	GRGCYC	1 cut(s)	994
BauI	CACGAG	1 cut(s)	366
BbsI	GAAGAC	1 cut(s)	512
Bbv12I	GWGCWC	1 cut(s)	994
BbvI	GCAGC	2 cut(s)	5, 744
BccI	CCATC	4 cut(s)	224, 672, 874, 917
BceAI	ACGGC	1 cut(s)	596
BciT130I	CCWGG	2 cut(s)	9, 588
BcoDI	GTCTC	2 cut(s)	263, 363
BfaI	CTAG	2 cut(s)	608, 891
BisI	GCNGC	4 cut(s)	19, 579, 758, 775
BlsI	GCNGC	4 cut(s)	20, 580, 759, 776
Bme1390I	CCNGG	2 cut(s)	9, 588
BmeT110I	CYCGRG	1 cut(s)	987
BmrFI	CCNGG	2 cut(s)	9, 588
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	200
BmtI	GCTAGC	1 cut(s)	894
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	512
Bpu10I	CCTNAGC	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	497
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 326
Bse1I	ACTGG	2 cut(s)	196, 277
Bse3DI	GCAATG	1 cut(s)	840
BseBI	CCWGG	2 cut(s)	9, 588
BseGI	GGATG	2 cut(s)	487, 928
BseLI	CCNNNNNNNGG	2 cut(s)	286, 326
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	3 cut(s)	54, 63, 272
BseNI	ACTGG	2 cut(s)	196, 277
BseRI	GAGGAG	2 cut(s)	635, 782
BseXI	GCAGC	2 cut(s)	5, 744
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	1 cut(s)	606
BsiHKAI	GWGCWC	1 cut(s)	994
BsiHKCI	CYCGRG	1 cut(s)	987
BslI	CCNNNNNNNGG	2 cut(s)	286, 326
BsmAI	GTCTC	2 cut(s)	263, 363
BsmI	GAATGC	2 cut(s)	196, 927
BsnI	GGCC	1 cut(s)	606
BsoBI	CYCGRG	1 cut(s)	987
Bsp1286I	GDGCHC	1 cut(s)	994
Bsp143I	GATC	3 cut(s)	472, 790, 952
BspACI	CCGC	5 cut(s)	114, 348, 579, 764, 775
BspANI	GGCC	1 cut(s)	606
BspCNI	CTCAG	3 cut(s)	55, 64, 273
BspFNI	CGCG	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	894
BspPI	GGATC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	196, 277
BssMI	GATC	3 cut(s)	472, 790, 952
BssSI	CACGAG	1 cut(s)	366
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	9, 588
Bst4CI	ACNGT	4 cut(s)	293, 374, 511, 523
Bst6I	CTCTTC	2 cut(s)	228, 564
BstC8I	GCNNGC	5 cut(s)	116, 629, 762, 892, 945
BstDEI	CTNAG	3 cut(s)	63, 72, 281
BstEII	GGTNACC	3 cut(s)	275, 448, 849
BstENI	CCTNNNNNAGG	1 cut(s)	284
BstF5I	GGATG	2 cut(s)	487, 928
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	475, 793, 955
BstMAI	GTCTC	2 cut(s)	263, 363
BstMBI	GATC	3 cut(s)	472, 790, 952
BstMWI	GCNNNNNNNGC	1 cut(s)	825
BstNI	CCWGG	2 cut(s)	9, 588
BstPI	GGTNACC	3 cut(s)	275, 448, 849
BstSCI	CCNGG	2 cut(s)	7, 586
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	5, 744
BstV2I	GAAGAC	1 cut(s)	512
BsuRI	GGCC	1 cut(s)	606
BtsCI	GGATG	2 cut(s)	487, 928
BtsI	GCAGTG	1 cut(s)	603
BtsIMutI	CAGTG	2 cut(s)	36, 603
Cac8I	GCNNGC	5 cut(s)	116, 629, 762, 892, 945
CaiI	CAGNNNCTG	1 cut(s)	602
Csp6I	GTAC	1 cut(s)	549
CviAII	CATG	2 cut(s)	308, 846
CviQI	GTAC	1 cut(s)	549
DdeI	CTNAG	3 cut(s)	63, 72, 281
DpnI	GATC	3 cut(s)	474, 792, 954
DpnII	GATC	3 cut(s)	472, 790, 952
Eam1104I	CTCTTC	2 cut(s)	228, 564
EarI	CTCTTC	2 cut(s)	228, 564
Ecl136II	GAGCTC	1 cut(s)	992
Eco24I	GRGCYC	1 cut(s)	994
Eco53kI	GAGCTC	1 cut(s)	992
Eco57I	CTGAAG	1 cut(s)	146
Eco88I	CYCGRG	1 cut(s)	987
Eco91I	GGTNACC	3 cut(s)	275, 448, 849
EcoICRI	GAGCTC	1 cut(s)	992
EcoNI	CCTNNNNNAGG	1 cut(s)	284
EcoO65I	GGTNACC	3 cut(s)	275, 448, 849
EcoRI	GAATTC	1 cut(s)	394
EcoRII	CCWGG	2 cut(s)	7, 586
EcoT38I	GRGCYC	1 cut(s)	994
FaeI	CATG	2 cut(s)	311, 849
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 821, 853
FatI	CATG	2 cut(s)	307, 845
FauI	CCCGC	1 cut(s)	107
FblI	GTMKAC	2 cut(s)	106, 525
Fnu4HI	GCNGC	4 cut(s)	19, 579, 758, 775
FokI	GGATG	2 cut(s)	494, 935
FriOI	GRGCYC	1 cut(s)	994
Fsp4HI	GCNGC	4 cut(s)	19, 579, 758, 775
FspBI	CTAG	2 cut(s)	608, 891
GluI	GCNGC	4 cut(s)	19, 579, 758, 775
HaeIII	GGCC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	311, 849
HincII	GTYRAC	1 cut(s)	107
HindII	GTYRAC	1 cut(s)	107
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	2 cut(s)	530, 906
HphI	GGTGA	6 cut(s)	23, 269, 512, 793, 843, 880
Hpy166II	GTNNAC	2 cut(s)	107, 526
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	7 cut(s)	207, 227, 476, 682, 794, 910, 987
Hpy8I	GTNNAC	2 cut(s)	107, 526
HpyCH4III	ACNGT	4 cut(s)	293, 374, 511, 523
HpyCH4V	TGCA	4 cut(s)	596, 627, 845, 943
HpyF10VI	GCNNNNNNNGC	1 cut(s)	825
HpyF3I	CTNAG	3 cut(s)	63, 72, 281
Hsp92II	CATG	2 cut(s)	311, 849
Kzo9I	GATC	3 cut(s)	472, 790, 952
LmnI	GCTCC	2 cut(s)	643, 899
Lsp1109I	GCAGC	2 cut(s)	5, 744
LweI	GCATC	1 cut(s)	200
MaeI	CTAG	2 cut(s)	608, 891
MaeIII	GTNAC	6 cut(s)	263, 275, 352, 448, 572, 849
MalI	GATC	3 cut(s)	474, 792, 954
MboI	GATC	3 cut(s)	472, 790, 952
MboII	GAAGA	7 cut(s)	139, 154, 215, 517, 551, 829, 889
MhlI	GDGCHC	1 cut(s)	994
MluCI	AATT	8 cut(s)	130, 178, 242, 394, 412, 455, 917, 962
MlyI	GAGTC	1 cut(s)	539
MseI	TTAA	1 cut(s)	997
MspR9I	CCNGG	2 cut(s)	9, 588
Mva1269I	GAATGC	2 cut(s)	196, 927
MvaI	CCWGG	2 cut(s)	9, 588
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	825
NdeII	GATC	3 cut(s)	472, 790, 952
NheI	GCTAGC	1 cut(s)	890
NlaIII	CATG	2 cut(s)	311, 849
NmuCI	GTSAC	2 cut(s)	275, 849
PcsI	WCGNNNNNNNCGW	2 cut(s)	264, 735
PctI	GAATGC	2 cut(s)	196, 927
PfeI	GAWTC	1 cut(s)	906
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	20, 580, 759, 776
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PsiI	TTATAA	2 cut(s)	177, 980
Psp124BI	GAGCTC	1 cut(s)	994
Psp6I	CCWGG	2 cut(s)	7, 586
PspEI	GGTNACC	3 cut(s)	275, 448, 849
PspGI	CCWGG	2 cut(s)	7, 586
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	550
RsaNI	GTAC	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	994
SalI	GTCGAC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	997
SatI	GCNGC	4 cut(s)	19, 579, 758, 775
Sau3AI	GATC	3 cut(s)	472, 790, 952
SchI	GAGTC	1 cut(s)	539
ScrFI	CCNGG	2 cut(s)	9, 588
SduI	GDGCHC	1 cut(s)	994
SfaNI	GCATC	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	8 cut(s)	130, 178, 242, 394, 412, 455, 917, 962
SsiI	CCGC	5 cut(s)	114, 348, 579, 764, 775
SspMI	CTAG	2 cut(s)	608, 891
SstI	GAGCTC	1 cut(s)	994
StyD4I	CCNGG	2 cut(s)	7, 586
TaaI	ACNGT	4 cut(s)	293, 374, 511, 523
TaqI	TCGA	2 cut(s)	106, 206
TasI	AATT	8 cut(s)	130, 178, 242, 394, 412, 455, 917, 962
TauI	GCSGC	2 cut(s)	581, 777
TfiI	GAWTC	1 cut(s)	906
Tru1I	TTAA	1 cut(s)	997
Tru9I	TTAA	1 cut(s)	997
TscAI	CASTG	2 cut(s)	43, 603
TseFI	GTSAC	2 cut(s)	275, 849
TseI	GCWGC	2 cut(s)	18, 757
Tsp45I	GTSAC	2 cut(s)	275, 849
TspDTI	ATGAA	7 cut(s)	13, 17, 447, 484, 661, 829, 890
TspRI	CASTG	2 cut(s)	43, 603
Van91I	CCANNNNNTGG	1 cut(s)	326
XagI	CCTNNNNNAGG	1 cut(s)	284
XapI	RAATTY	3 cut(s)	242, 394, 455
XmiI	GTMKAC	2 cut(s)	106, 525
XspI	CTAG	2 cut(s)	608, 891

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.