Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Reverse (-)

28636349 .. 28637805

Gene Structure 1457 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGAATGTTGGGTTGGGGCAGGCGGCGTCTGGCATGGCTGTGAGTGATGAATGCAAACTCAAGTTCTTGGAGCTAAAAGCGAAGAGAAACCATCGATACATTATATTCAAGATTGAGATTCAACAAGTGGTGGTAGAGAAGGTTGGTACCAAAGAAGAAACATATGACGACTTTGCGGCATCCCTGCCTGCCGATGAGTGTCGCTATGCTGTCTTTGATTTTGATTTCACCACTGTCGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGGTCCCCTGATACATCAAAGGTGAGAATGAAGATGGTGTACGCAAGCTCCAAAGATAGATTCAAGAGGGAATTGGATGGCACTCAAGTTGAGTTGCAGGCAACTGATCCTAGCGAAATCAGCCTTGACATTATAAAAAGCCGAGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

142

Amino Acids

16.06

Weight (kDa)

5.9

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	407
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	2 cut(s)	23, 176
AclWI	GGATC	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	2 cut(s)	148, 314
AgsI	TTSAA	3 cut(s)	109, 122, 337
AjuI	GAANNNNNNNTTGG	3 cut(s)	28, 317, 349
AluBI	AGCT	3 cut(s)	73, 321, 419
AluI	AGCT	3 cut(s)	73, 321, 419
Alw21I	GWGCWC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	374
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	276
AsuHPI	GGTGA	2 cut(s)	220, 307
AvaII	GGWCC	1 cut(s)	276
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	421
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
Bbv12I	GWGCWC	1 cut(s)	421
BccI	CCATC	3 cut(s)	99, 301, 344
BfaI	CTAG	1 cut(s)	384
BisI	GCNGC	2 cut(s)	24, 177
BlsI	GCNGC	2 cut(s)	25, 178
Bme18I	GGWCC	1 cut(s)	276
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	148, 278
BmsI	GCATC	1 cut(s)	188
BpuEI	CTTGAG	2 cut(s)	44, 342
Bsa29I	ATCGAT	1 cut(s)	94
BsaHI	GRCGYC	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bse3DI	GCAATG	1 cut(s)	267
BseCI	ATCGAT	1 cut(s)	94
BseGI	GGATG	2 cut(s)	179, 355
BseMI	GCAATG	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	146
BshVI	ATCGAT	1 cut(s)	94
BsiHKAI	GWGCWC	1 cut(s)	421
BslFI	GGGAC	1 cut(s)	262
BsmFI	GGGAC	1 cut(s)	262
BsmI	GAATGC	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	2 cut(s)	23, 176
BspDI	ATCGAT	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	148, 278
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	267
BssMI	GATC	1 cut(s)	379
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	4 cut(s)	21, 189, 319, 372
BstF5I	GGATG	2 cut(s)	179, 355
BstKTI	GATC	1 cut(s)	382
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 393
Bsu15I	ATCGAT	1 cut(s)	94
BsuTUI	ATCGAT	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	179, 355
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	4 cut(s)	21, 189, 319, 372
Cfr13I	GGNCC	1 cut(s)	276
ClaI	ATCGAT	1 cut(s)	94
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	2 cut(s)	147, 313
CviAII	CATG	2 cut(s)	34, 273
CviJI	RGCY	6 cut(s)	38, 73, 321, 396, 414, 419
CviKI_1	RGCY	6 cut(s)	38, 73, 321, 396, 414, 419
CviQI	GTAC	2 cut(s)	147, 313
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Ecl136II	GAGCTC	1 cut(s)	419
Eco24I	GRGCYC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	276
Eco53kI	GAGCTC	1 cut(s)	419
EcoICRI	GAGCTC	1 cut(s)	419
EcoT38I	GRGCYC	1 cut(s)	421
FaeI	CATG	2 cut(s)	37, 276
FaiI	YATR	7 cut(s)	35, 104, 163, 165, 207, 274, 407
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	1 cut(s)	262
FatI	CATG	2 cut(s)	33, 272
FauNDI	CATATG	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	24, 177
FokI	GGATG	2 cut(s)	166, 362
FriOI	GRGCYC	1 cut(s)	421
Fsp4HI	GCNGC	2 cut(s)	24, 177
FspBI	CTAG	1 cut(s)	384
GluI	GCNGC	2 cut(s)	24, 177
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	26
Hin1II	CATG	2 cut(s)	37, 276
HinfI	GANTC	2 cut(s)	118, 333
HphI	GGTGA	2 cut(s)	220, 307
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188III	TCNNGA	3 cut(s)	109, 238, 337
Hpy8I	GTNNAC	1 cut(s)	313
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4V	TGCA	3 cut(s)	54, 272, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 393
Hsp92I	GRCGYC	1 cut(s)	26
Hsp92II	CATG	2 cut(s)	37, 276
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	70, 326
LpnPI	CCDG	7 cut(s)	5, 15, 197, 201, 260, 294, 356
LweI	GCATC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	384
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	94, 167, 256, 316
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	1 cut(s)	344
MnlI	CCTC	1 cut(s)	333
MseI	TTAA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	38
Mva1269I	GAATGC	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	252, 393
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	2 cut(s)	37, 276
NlaIV	GGNNCC	2 cut(s)	148, 278
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	2 cut(s)	118, 333
PkrI	GCNGC	2 cut(s)	25, 178
PsiI	TTATAA	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	421
PspN4I	GGNNCC	2 cut(s)	148, 278
PspPI	GGNCC	1 cut(s)	276
RsaI	GTAC	2 cut(s)	148, 314
RsaNI	GTAC	2 cut(s)	147, 313
RseI	CAYNNNNRTG	1 cut(s)	38
SacI	GAGCTC	1 cut(s)	421
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	2 cut(s)	24, 177
Sau3AI	GATC	1 cut(s)	379
Sau96I	GGNCC	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	5 cut(s)	75, 144, 297, 323, 421
SfaNI	GCATC	1 cut(s)	188
SinI	GGWCC	1 cut(s)	276
SmiMI	CAYNNNNRTG	1 cut(s)	38
SmlI	CTYRAG	2 cut(s)	59, 357
SmoI	CTYRAG	2 cut(s)	59, 357
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	2 cut(s)	23, 176
SspMI	CTAG	1 cut(s)	384
SstI	GAGCTC	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	235
TaqI	TCGA	2 cut(s)	94, 237
TasI	AATT	1 cut(s)	344
TauI	GCSGC	2 cut(s)	26, 179
TfiI	GAWTC	2 cut(s)	118, 333
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	238
TspDTI	ATGAA	4 cut(s)	17, 63, 256, 317
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	276
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.