Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Forward (+)

33711658 .. 33713991

Gene Structure 2334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1269700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTGAGCAAGAGACAGAGAGAAGCTCGCAGGAAATTCAGAGCAGAACACCCAGAACTGGCTAAACAGCCAACCCCCCCAAAAGACCCAACCAAGAAGAAGGAGAAGAAGAGCTCCTTCAAGCGCAAAAAGGCACCCAGCGACCCAGCCAAACCCAGCAAAAACCCCCATAGAAAACACCCCCTCAGAGTACCCGGCATGAAGCCTGGAGATAGCTGCTTCATCTGTAAATCCACCGAGCATATCGCCAAGCTCTGCCCCGAGAAAGTTCAATGGGACAAGCACAAGATATGTTTATATTGTCGCCAACGAGGGCATAGCATCAAGAATTGCCTTAACAAGAAAGACGATTCCGTGGCTGAGAAGTTATGTTATAATTGTGGGGAAAATGGGCATTCGCTTTCTAACTGCCCCTATCCTCTTGAAGACGGAGGAACTAAATTTGCCAAGTGCTTCATCTGTAATGGGACTGGTCACTTGAGCAAGAACTGCCCTCAAAATACTCATGGGATTTATCCAAAGGGTGGTAGTTGCAAAATTTGTGGAGGTGTAACACATTTGGCGAAGGATTGTCCAAACAAAAGCAGCAGTTCAATGTCCGCTGGTAGATCTCCTCACTCGTGGAAAGAAAGTGATCTTCCAAGAGGAAAGGTTACCAAATTTCTGAGTGGAGACGATCTTGAGGATGATTTCAGTTTCATAGATGAGAAGAAAAATGGCGTTACACAAGACAAGTCCGCTGATACAGTCGGTCCTGCTTCTCTTTCACAAGAAAGCACTGTAAAATCAAAGAAGAAACAAGGACCCAAAGTAGTGAATTTCGTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

277

Amino Acids

30.53

Weight (kDa)

9.58

Isoelectric Point (pI)

39.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	375
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	524
AciI	CCGC	2 cut(s)	600, 738
AcsI	RAATTY	5 cut(s)	35, 440, 537, 659, 817
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	58, 524
AgsI	TTSAA	4 cut(s)	121, 272, 425, 594
AjnI	CCWGG	1 cut(s)	205
AluBI	AGCT	4 cut(s)	26, 114, 216, 253
AluI	AGCT	4 cut(s)	26, 114, 216, 253
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	7, 666
Ama87I	CYCGRG	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	216, 585
ApoI	RAATTY	5 cut(s)	35, 440, 537, 659, 817
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	752, 803
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	752, 803
BanI	GGYRCC	1 cut(s)	133
BanII	GRGCYC	1 cut(s)	116
BauI	CACGAG	1 cut(s)	619
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	116
BbvI	GCAGC	2 cut(s)	203, 597
BciT130I	CCWGG	1 cut(s)	207
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	2 cut(s)	7, 666
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	2 cut(s)	217, 586
BlsI	GCNGC	2 cut(s)	218, 587
Bme1390I	CCNGG	2 cut(s)	195, 207
Bme18I	GGWCC	2 cut(s)	752, 803
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	2 cut(s)	752, 803
BmiI	GGNNCC	2 cut(s)	135, 805
BmrFI	CCNGG	2 cut(s)	195, 207
BmsI	GCATC	1 cut(s)	330
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	10, 42
BpmI	CTGGAG	1 cut(s)	228
BpuEI	CTTGAG	2 cut(s)	499, 701
BpuMI	CCSGG	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 524
Bse1I	ACTGG	2 cut(s)	63, 475
BseBI	CCWGG	1 cut(s)	207
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	58, 524
BseMII	CTCAG	3 cut(s)	199, 351, 656
BseNI	ACTGG	2 cut(s)	63, 475
BseRI	GAGGAG	1 cut(s)	603
BseXI	GCAGC	2 cut(s)	203, 597
BseYI	CCCAGC	3 cut(s)	137, 145, 155
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	2 cut(s)	290, 481
BslI	CCNNNNNNNGG	2 cut(s)	58, 524
BsmAI	GTCTC	2 cut(s)	7, 666
BsmBI	CGTCTC	1 cut(s)	666
BsmFI	GGGAC	2 cut(s)	290, 481
BsmI	GAATGC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	3 cut(s)	608, 634, 676
BspACI	CCGC	2 cut(s)	600, 738
BspCNI	CTCAG	3 cut(s)	198, 352, 657
BspLI	GGNNCC	2 cut(s)	135, 805
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	63, 475
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	3 cut(s)	608, 634, 676
BssSI	CACGAG	1 cut(s)	619
Bst2BI	CACGAG	1 cut(s)	619
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	2 cut(s)	748, 781
Bst6I	CTCTTC	1 cut(s)	104
BstAPI	GCANNNNNTGC	1 cut(s)	489
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	185, 360, 665
BstDSI	CCRYGG	1 cut(s)	354
BstEII	GGTNACC	1 cut(s)	652
BstF5I	GGATG	1 cut(s)	691
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	3 cut(s)	611, 637, 679
BstMAI	GTCTC	2 cut(s)	7, 666
BstMBI	GATC	3 cut(s)	608, 634, 676
BstMWI	GCNNNNNNNGC	1 cut(s)	489
BstNI	CCWGG	1 cut(s)	207
BstPI	GGTNACC	1 cut(s)	652
BstSCI	CCNGG	2 cut(s)	193, 205
BstV1I	GCAGC	2 cut(s)	203, 597
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BtgI	CCRYGG	1 cut(s)	354
BtsCI	GGATG	1 cut(s)	691
BtsIMutI	CAGTG	1 cut(s)	777
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	126
Cfr13I	GGNCC	2 cut(s)	752, 803
Csp6I	GTAC	1 cut(s)	191
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	2 cut(s)	199, 506
CviJI	RGCY	9 cut(s)	26, 62, 70, 114, 149, 205, 216, 253, 359
CviKI_1	RGCY	9 cut(s)	26, 62, 70, 114, 149, 205, 216, 253, 359
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	3 cut(s)	185, 360, 665
DpnI	GATC	3 cut(s)	610, 636, 678
DpnII	GATC	3 cut(s)	608, 634, 676
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Ecl136II	GAGCTC	1 cut(s)	114
Eco24I	GRGCYC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	752, 803
Eco53kI	GAGCTC	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	260
Eco91I	GGTNACC	1 cut(s)	652
EcoICRI	GAGCTC	1 cut(s)	114
EcoO109I	RGGNCCY	1 cut(s)	803
EcoO65I	GGTNACC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	116
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	2 cut(s)	202, 509
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	290, 481
FatI	CATG	2 cut(s)	198, 505
Fnu4HI	GCNGC	2 cut(s)	217, 586
FokI	GGATG	1 cut(s)	698
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	2 cut(s)	217, 586
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	2 cut(s)	217, 586
GsaI	CCCAGC	3 cut(s)	141, 149, 159
GsuI	CTGGAG	1 cut(s)	228
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	2 cut(s)	202, 509
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HinfI	GANTC	1 cut(s)	350
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	41, 188, 666
Hpy188III	TCNNGA	3 cut(s)	325, 422, 680
HpyAV	CCTTC	3 cut(s)	94, 127, 559
HpyCH4III	ACNGT	2 cut(s)	748, 781
HpyCH4V	TGCA	1 cut(s)	534
HpyF10VI	GCNNNNNNNGC	1 cut(s)	489
HpyF3I	CTNAG	3 cut(s)	185, 360, 665
Hsp92II	CATG	2 cut(s)	202, 509
HspAI	GCGC	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	608, 634, 676
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	2 cut(s)	203, 597
LweI	GCATC	1 cut(s)	330
MaeIII	GTNAC	4 cut(s)	473, 550, 652, 721
MalI	GATC	3 cut(s)	610, 636, 678
MboI	GATC	3 cut(s)	608, 634, 676
MboII	GAAGA	7 cut(s)	109, 118, 121, 437, 629, 721, 805
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	7 cut(s)	35, 328, 376, 440, 537, 659, 817
MmeI	TCCRAC	1 cut(s)	805
MnlI	CCTC	9 cut(s)	194, 305, 425, 429, 504, 539, 624, 638, 676
MseI	TTAA	1 cut(s)	336
MspA1I	CMGCKG	2 cut(s)	602, 740
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	2 cut(s)	195, 207
Mva1269I	GAATGC	1 cut(s)	394
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	1 cut(s)	489
NciI	CCSGG	1 cut(s)	195
NdeII	GATC	3 cut(s)	608, 634, 676
NlaIII	CATG	2 cut(s)	202, 509
NlaIV	GGNNCC	2 cut(s)	135, 805
NmuCI	GTSAC	1 cut(s)	473
PciSI	GCTCTTC	1 cut(s)	104
PctI	GAATGC	1 cut(s)	394
PfeI	GAWTC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	2 cut(s)	218, 587
PpuMI	RGGWCCY	1 cut(s)	803
PsiI	TTATAA	1 cut(s)	375
Psp124BI	GAGCTC	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	205
PspEI	GGTNACC	1 cut(s)	652
PspFI	CCCAGC	3 cut(s)	137, 145, 155
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	2 cut(s)	135, 805
PspPI	GGNCC	2 cut(s)	752, 803
PspPPI	RGGWCCY	1 cut(s)	803
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	116
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	336
SatI	GCNGC	2 cut(s)	217, 586
Sau3AI	GATC	3 cut(s)	608, 634, 676
Sau96I	GGNCC	2 cut(s)	752, 803
ScrFI	CCNGG	2 cut(s)	195, 207
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	6 cut(s)	28, 116, 218, 255, 550, 654
SfaNI	GCATC	1 cut(s)	330
SinI	GGWCC	2 cut(s)	752, 803
SmlI	CTYRAG	2 cut(s)	478, 680
SmoI	CTYRAG	2 cut(s)	478, 680
Sse9I	AATT	7 cut(s)	35, 328, 376, 440, 537, 659, 817
SsiI	CCGC	2 cut(s)	600, 738
SstI	GAGCTC	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	193, 205
TaaI	ACNGT	2 cut(s)	748, 781
TaqII	GACCGA	1 cut(s)	740
TasI	AATT	7 cut(s)	35, 328, 376, 440, 537, 659, 817
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	1 cut(s)	336
Tru9I	TTAA	1 cut(s)	336
TscAI	CASTG	1 cut(s)	784
TseFI	GTSAC	1 cut(s)	473
TseI	GCWGC	2 cut(s)	216, 585
Tsp45I	GTSAC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	211, 215, 445, 688
TspGWI	ACGGA	2 cut(s)	343, 444
TspRI	CASTG	1 cut(s)	784
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	2 cut(s)	752, 803
XapI	RAATTY	5 cut(s)	35, 440, 537, 659, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.