Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Reverse (-)

19315755 .. 19318495

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g21140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTTCCCTTTCCAGTTCCCTTGAACGGTGGAAGCCTTTACTGCTTCTCCCAAAACCCTCCAGAACCCCCAGAGCTCTCGTTTCGGCGTCTGAGACAAAAATGGTGAGCAAGAGACAGAGAGAAGCTCGCAAGAAATTCCGAGCAGAACACCCAGAACTGGCTAAACAGCCGACTCCGCCCAAAGACCCAACTAGGAAGAAGGACAAGAAGAAGAGCTCGTTCAAGCGCAAAAAAGCACCCAGCGACCCAGCCAAACCCAGCAAAAACCCCCATAGAAAACACCCCCTCAGAGTCCCCGGCATGAAGCCCGGCGACAGCTGCTTCATCTGTAAATCCACCGAACATATCGCCAAGCTCTGCCCCGAGAAAGTTCAGTGGGATAAGCACAAGATATGTTTATATTGTCGGCAACGTGGGCATAGCATCAAGAATTGCCTTAACAAGAGAGACGATTCTGTGGCTGAGAAGTTATGTTATAATTGTGGGGAAAATGGACATTCGCTTTCGAACTGCCCCTACCCTCTTGAAGACGGAGGAACTAAATTTGCCAAGTGCTTCATCTGTAATGGGACGGGTCACTTGAGCAAGAACTGCCCTGAAAATACTCATGGGATTTATCCAAAGGGTGGTAGTTGTAAAATTTGCGGGGGTGTAACACACTTGGCGAAGGATTGTCCTAACAAAAGCAACAGTTCGATGTCTGCTGGTAGATCTGCTCACTCGTGGAAAGAAAGTGATCTGCCAAGAGGAAAGGTTACAAAATTTCTCAGTGGAGACGACCTTGAGGACGATTTCAGTTTCATAGATGAGAAGAAAAGTGGCGGTACACAAGACAAGTCTGCAGATGTAGTTGGTTCTGCATCTCTTTCACAAGAAAGTACTGTAAAATCAAAGAAGAAGAAACAAGGACCCAAAGTAGTGAATTTCGTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

313

Amino Acids

34.44

Weight (kDa)

9.71

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	480
AccB7I	CCANNNNNTGG	1 cut(s)	629
AciI	CCGC	3 cut(s)	179, 648, 825
AcsI	RAATTY	5 cut(s)	137, 545, 642, 764, 925
AcyI	GRCGYC	1 cut(s)	89
AfaI	GTAC	2 cut(s)	829, 883
AfiI	CCNNNNNNNGG	3 cut(s)	27, 160, 629
AgsI	TTSAA	3 cut(s)	26, 226, 530
AluBI	AGCT	5 cut(s)	77, 128, 219, 321, 358
AluI	AGCT	5 cut(s)	77, 128, 219, 321, 358
Alw21I	GWGCWC	2 cut(s)	79, 221
Alw26I	GTCTC	4 cut(s)	89, 109, 444, 771
Ama87I	CYCGRG	1 cut(s)	365
ApeKI	GCWGC	1 cut(s)	321
ApoI	RAATTY	5 cut(s)	137, 545, 642, 764, 925
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	911
AsuC2I	CCSGG	2 cut(s)	300, 312
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	509
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	911
BanII	GRGCYC	2 cut(s)	79, 221
BauI	CACGAG	1 cut(s)	724
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	79, 221
BbvI	GCAGC	1 cut(s)	308
BcnI	CCSGG	2 cut(s)	300, 312
BcoDI	GTCTC	4 cut(s)	89, 109, 444, 771
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	843
BglII	AGATCT	1 cut(s)	713
BisI	GCNGC	1 cut(s)	322
BlsI	GCNGC	1 cut(s)	323
BmcAI	AGTACT	1 cut(s)	883
Bme1390I	CCNGG	2 cut(s)	300, 312
Bme18I	GGWCC	1 cut(s)	911
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	911
BmiI	GGNNCC	2 cut(s)	7, 913
BmrFI	CCNGG	2 cut(s)	300, 312
BmsI	GCATC	2 cut(s)	435, 872
BpiI	GAAGAC	1 cut(s)	537
BplI	GAGNNNNNCTC	2 cut(s)	112, 144
BpmI	CTGGAG	1 cut(s)	46
Bpu14I	TTCGAA	1 cut(s)	509
BpuEI	CTTGAG	2 cut(s)	604, 806
BpuMI	CCSGG	2 cut(s)	300, 312
BsaHI	GRCGYC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	298
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 160, 629
Bse1I	ACTGG	2 cut(s)	15, 165
BseDI	CCNNGG	1 cut(s)	298
BseLI	CCNNNNNNNGG	3 cut(s)	27, 160, 629
BseMII	CTCAG	4 cut(s)	84, 304, 456, 784
BseNI	ACTGG	2 cut(s)	15, 165
BseXI	GCAGC	1 cut(s)	308
BseYI	CCCAGC	3 cut(s)	242, 250, 260
BsiHKAI	GWGCWC	2 cut(s)	79, 221
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	2 cut(s)	300, 312
BslFI	GGGAC	2 cut(s)	281, 586
BslI	CCNNNNNNNGG	3 cut(s)	27, 160, 629
BsmAI	GTCTC	4 cut(s)	89, 109, 444, 771
BsmBI	CGTCTC	2 cut(s)	444, 771
BsmFI	GGGAC	2 cut(s)	281, 586
BsoBI	CYCGRG	1 cut(s)	365
Bsp119I	TTCGAA	1 cut(s)	509
Bsp1286I	GDGCHC	2 cut(s)	79, 221
Bsp143I	GATC	2 cut(s)	713, 739
BspACI	CCGC	3 cut(s)	179, 648, 825
BspCNI	CTCAG	4 cut(s)	85, 303, 457, 783
BspLI	GGNNCC	2 cut(s)	7, 913
BspMAI	CTGCAG	1 cut(s)	847
BspQI	GCTCTTC	1 cut(s)	209
BspT104I	TTCGAA	1 cut(s)	509
BsrI	ACTGG	2 cut(s)	15, 165
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	713, 739
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	724
Bst2BI	CACGAG	1 cut(s)	724
Bst4CI	ACNGT	3 cut(s)	30, 695, 886
Bst6I	CTCTTC	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	89
BstAPI	GCANNNNNTGC	1 cut(s)	594
BstBI	TTCGAA	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	130
BstDEI	CTNAG	4 cut(s)	93, 290, 465, 770
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	716, 742
BstMAI	GTCTC	4 cut(s)	89, 109, 444, 771
BstMBI	GATC	2 cut(s)	713, 739
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 178, 321, 418, 594
BstSCI	CCNGG	2 cut(s)	298, 310
BstSFI	CTRYAG	1 cut(s)	843
BstV1I	GCAGC	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	713
BstYI	RGATCY	1 cut(s)	713
BtsIMutI	CAGTG	2 cut(s)	383, 778
Cac8I	GCNNGC	1 cut(s)	130
CfoI	GCGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	911
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	828, 882
CviAII	CATG	2 cut(s)	304, 611
CviQI	GTAC	2 cut(s)	828, 882
DdeI	CTNAG	4 cut(s)	93, 290, 465, 770
DpnI	GATC	2 cut(s)	715, 741
DpnII	GATC	2 cut(s)	713, 739
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	168
Ecl136II	GAGCTC	2 cut(s)	77, 219
Eco24I	GRGCYC	2 cut(s)	79, 221
Eco47I	GGWCC	1 cut(s)	911
Eco53kI	GAGCTC	2 cut(s)	77, 219
Eco88I	CYCGRG	1 cut(s)	365
EcoICRI	GAGCTC	2 cut(s)	77, 219
EcoO109I	RGGNCCY	1 cut(s)	911
EcoT38I	GRGCYC	2 cut(s)	79, 221
Esp3I	CGTCTC	2 cut(s)	444, 771
FaeI	CATG	2 cut(s)	307, 614
FaqI	GGGAC	2 cut(s)	281, 586
FatI	CATG	2 cut(s)	303, 610
FauI	CCCGC	1 cut(s)	641
Fnu4HI	GCNGC	1 cut(s)	322
FriOI	GRGCYC	2 cut(s)	79, 221
Fsp4HI	GCNGC	1 cut(s)	322
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	322
GsaI	CCCAGC	3 cut(s)	246, 254, 264
GsuI	CTGGAG	1 cut(s)	46
HapII	CCGG	2 cut(s)	300, 312
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	307, 614
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	3 cut(s)	175, 294, 455
HpaII	CCGG	2 cut(s)	300, 312
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	830
Hpy188I	TCNGA	3 cut(s)	94, 143, 293
Hpy188III	TCNNGA	3 cut(s)	63, 430, 527
Hpy8I	GTNNAC	1 cut(s)	830
HpyAV	CCTTC	2 cut(s)	196, 664
HpyCH4III	ACNGT	3 cut(s)	30, 695, 886
HpyCH4IV	ACGT	1 cut(s)	415
HpyCH4V	TGCA	2 cut(s)	845, 863
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 178, 321, 418, 594
HpyF3I	CTNAG	4 cut(s)	93, 290, 465, 770
HpySE526I	ACGT	1 cut(s)	415
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	307, 614
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	2 cut(s)	713, 739
LguI	GCTCTTC	1 cut(s)	209
Lsp1109I	GCAGC	1 cut(s)	308
LweI	GCATC	2 cut(s)	435, 872
MaeI	CTAG	1 cut(s)	195
MaeII	ACGT	1 cut(s)	415
MaeIII	GTNAC	3 cut(s)	578, 655, 757
MalI	GATC	2 cut(s)	715, 741
MboI	GATC	2 cut(s)	713, 739
MboII	GAAGA	7 cut(s)	211, 223, 226, 542, 826, 910, 913
MflI	RGATCY	1 cut(s)	713
MhlI	GDGCHC	2 cut(s)	79, 221
MluCI	AATT	7 cut(s)	137, 433, 481, 545, 642, 764, 925
MlyI	GAGTC	2 cut(s)	169, 303
MmeI	TCCRAC	1 cut(s)	913
MnlI	CCTC	6 cut(s)	70, 299, 530, 534, 743, 781
MseI	TTAA	1 cut(s)	441
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	2 cut(s)	300, 312
MspR9I	CCNGG	2 cut(s)	300, 312
MwoI	GCNNNNNNNGC	5 cut(s)	43, 178, 321, 418, 594
NciI	CCSGG	2 cut(s)	300, 312
NdeII	GATC	2 cut(s)	713, 739
NlaIII	CATG	2 cut(s)	307, 614
NlaIV	GGNNCC	2 cut(s)	7, 913
NmuCI	GTSAC	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	509
PciSI	GCTCTTC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	629
PkrI	GCNGC	1 cut(s)	323
PleI	GAGTC	2 cut(s)	169, 302
PpsI	GAGTC	2 cut(s)	169, 302
PpuMI	RGGWCCY	1 cut(s)	911
PsiI	TTATAA	1 cut(s)	480
Psp124BI	GAGCTC	2 cut(s)	79, 221
Psp5II	RGGWCCY	1 cut(s)	911
PspFI	CCCAGC	3 cut(s)	242, 250, 260
PspN4I	GGNNCC	2 cut(s)	7, 913
PspPI	GGNCC	1 cut(s)	911
PspPPI	RGGWCCY	1 cut(s)	911
PsrI	GAACNNNNNNTAC	2 cut(s)	503, 535
PstI	CTGCAG	1 cut(s)	847
PsuI	RGATCY	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	321
RsaI	GTAC	2 cut(s)	829, 883
RsaNI	GTAC	2 cut(s)	828, 882
SacI	GAGCTC	2 cut(s)	79, 221
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	322
Sau3AI	GATC	2 cut(s)	713, 739
Sau96I	GGNCC	1 cut(s)	911
ScaI	AGTACT	1 cut(s)	883
SchI	GAGTC	2 cut(s)	169, 303
ScrFI	CCNGG	2 cut(s)	300, 312
SduI	GDGCHC	2 cut(s)	79, 221
SetI	ASST	8 cut(s)	79, 130, 221, 323, 360, 418, 759, 786
SfaNI	GCATC	2 cut(s)	435, 872
SfcI	CTRYAG	1 cut(s)	843
SfuI	TTCGAA	1 cut(s)	509
SinI	GGWCC	1 cut(s)	911
SmlI	CTYRAG	2 cut(s)	583, 785
SmoI	CTYRAG	2 cut(s)	583, 785
Sse9I	AATT	7 cut(s)	137, 433, 481, 545, 642, 764, 925
SsiI	CCGC	3 cut(s)	179, 648, 825
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	2 cut(s)	79, 221
StyD4I	CCNGG	2 cut(s)	298, 310
TaaI	ACNGT	3 cut(s)	30, 695, 886
TaiI	ACGT	1 cut(s)	418
TaqI	TCGA	2 cut(s)	509, 698
TasI	AATT	7 cut(s)	137, 433, 481, 545, 642, 764, 925
TatI	WGTACW	1 cut(s)	881
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	383, 778
TseFI	GTSAC	1 cut(s)	578
TseI	GCWGC	1 cut(s)	321
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	4 cut(s)	316, 320, 550, 793
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	2 cut(s)	383, 778
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	1 cut(s)	911
XapI	RAATTY	5 cut(s)	137, 545, 642, 764, 925
XspI	CTAG	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.