Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0008202

Physical Location & Seq

Genomic Coordinates Reverse (-)

64692453 .. 64695709

Gene Structure 3257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCGAACAAAAGACAGAGAGAGGCACGCAAGAGATTCAGAGCAGAGCACCCAGAACAGGTTAAAACCCCAGAGCCAACTCCCCCAAAAGACCCAAGCAAGAAGAAGAAGGTAAAGAAGCCCAGTTTCAAGCGCAAGAGATCAGAATCTGGAGCACCCAATGACCCCAATAGAGCAGCCAAGAAGTCTCGGAGTAAACACCCACTTAGAGTCCCTGGTATGAAGCCCGGAGATAGCTGCTTCATTTGTAAAGGCACTGACCATATTGCCAAGCTTTGCCCTGAGAAAGCTGAGTGGGATAGGCACAAGATATGCTTGTTTTGTCGACAACGCGGGCATAGTCTGAAGAATTGCCAAAAGAAGAATGAGAATGATACGGAGGCGAAGTTATGTTATAATTGTGGGGAAACCGGGCATTCGCTCTCTAGATGCCCCTTACCTCTTCAAGATGGAGGAACTAAATTTGCCAAGTGCTTCGTCTGTAACGAGACTGGTCACCTGAGCAAGGACTGTCCTAAAAACTCTCATGGGATTTATCCAAAGGGTGGTTCTTGTAAAATATGTGGCGGTGTGACACATTTGGCACGAGATTGTCCTAACAAAGACAGCAGGAATTCAATAGGTTCTGGCAATTCTAATCCCAAATGGAATGAACCAAGAGGAAAGGTTACCAAATTTGCGAGTGGAGATGATCTTGAGGATGATTTCAGTTTAGGTGAGAAGACTGTTGCCAAAACAGTAGACGAGTCTGCCAATGTAGCCGCCTCGCCTGGCTTTGCAGTGTCTGGCCTAGCCGTGAATGAGGAGTGCAAGCAGAAGTTCTTGGAGCTAAAAGCCAAGAGAAACCATCGTTTCATTATATTCAAGATTGATAAGCAAGAAGTGGTGGTAGAGAAACTTGGAGAGCCAGACGAAACTTACGATGATTTCACAGCCTCGCTGCCTGCGGAGGAGTGCCGCTATGCTGTGTTTGATCTTGATTTCACCACTATTGAGAACTGCCAGAAAAGCAAGATTTTCTTCATTGCATGCTCCAAAGATAGATTCAAGAGAGAATTGGATGGCATTCAAGTTGAGTTGCAAGCAACTGATCCAAGTGAATTGAGCTTTGACATTATAAAATCCCGAGCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04360 ko04666 ko04810 ko05133 map04360 map04666 map04810 map05133

Pfam Domains

Protein Families

Cofilin_ADF zf-CCHC zf-CCHC_4

Protein Analysis

378

Amino Acids

42.31

Weight (kDa)

9.13

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC	PF00098	157 - 173	4.3e-06	Zinc knuckle
Cofilin_ADF	PF00241	264 - 376	3.9e-23	Cofilin/tropomyosin-type actin-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52380
fragaria_vesca	FvH4_7g29541 FvH4_7g29542 FvH4_7g29542 FvH4_7g29542
malus_domestica	MD01G1201600.v1.1 MD01G1201700.v1.1 MD07G1269700.v1.1
prunus_persica	Prupe.2G295000_v2.0.a1 Prupe.2G295000_v2.0.a1 Prupe.2G295100_v2.0.a1
pyrus_communis	pycom01g21140 pycom07g24670 pycom07g24680
rosa_chinensis	RchiOBHm_Chr1g0377391 RchiOBHm_Chr1g0377401
rosa_laevigata	RLG00000026522
rosa_roxburghii	Rroxscaffold_4G00281260
rosa_samantha	Rh1AG421100 Rh1AG421200 Rh1CG393900 Rh1DG410900
rosa_wichuraiana	Rw1G036920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	396, 1118
AccB7I	CCANNNNNTGG	1 cut(s)	545
AccI	GTMKAC	2 cut(s)	325, 741
AccII	CGCG	1 cut(s)	333
AciI	CCGC	5 cut(s)	333, 567, 762, 947, 958
AclWI	GGATC	1 cut(s)	1085
AcsI	RAATTY	3 cut(s)	461, 613, 674
AcuI	CTGAAG	1 cut(s)	365
AfiI	CCNNNNNNNGG	3 cut(s)	58, 505, 545
AgsI	TTSAA	6 cut(s)	130, 446, 618, 865, 1048, 1070
AjnI	CCWGG	2 cut(s)	214, 769
AjuI	GAANNNNNNNTTGG	4 cut(s)	532, 564, 1028, 1060
AluBI	AGCT	6 cut(s)	237, 274, 290, 829, 1107, 1130
AluI	AGCT	6 cut(s)	237, 274, 290, 829, 1107, 1130
Alw21I	GWGCWC	3 cut(s)	51, 157, 1132
Alw26I	GTCTC	2 cut(s)	192, 482
AlwI	GGATC	1 cut(s)	1085
AlwNI	CAGNNNCTG	2 cut(s)	149, 785
Ama87I	CYCGRG	1 cut(s)	1125
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	3 cut(s)	176, 237, 940
ApoI	RAATTY	3 cut(s)	461, 613, 674
AspLEI	GCGC	1 cut(s)	135
AsuC2I	CCSGG	2 cut(s)	228, 412
AsuHPI	GGTGA	3 cut(s)	488, 728, 976
AvaI	CYCGRG	1 cut(s)	1125
BanII	GRGCYC	1 cut(s)	1132
BauI	CACGAG	1 cut(s)	585
BbsI	GAAGAC	1 cut(s)	728
Bbv12I	GWGCWC	3 cut(s)	51, 157, 1132
BbvI	GCAGC	3 cut(s)	188, 224, 927
BccI	CCATC	3 cut(s)	443, 855, 1055
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	2 cut(s)	216, 771
BcnI	CCSGG	2 cut(s)	228, 412
BcoDI	GTCTC	2 cut(s)	192, 482
BfaI	CTAG	2 cut(s)	426, 791
BisI	GCNGC	5 cut(s)	177, 238, 762, 941, 958
BlsI	GCNGC	5 cut(s)	178, 239, 763, 942, 959
Bme1390I	CCNGG	4 cut(s)	216, 228, 412, 771
BmeT110I	CYCGRG	1 cut(s)	1125
BmrFI	CCNGG	4 cut(s)	216, 228, 412, 771
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	419
BmuI	ACTGGG	1 cut(s)	117
BpiI	GAAGAC	1 cut(s)	728
BpmI	CTGGAG	1 cut(s)	171
Bpu10I	CCTNAGC	1 cut(s)	500
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	2 cut(s)	228, 412
BsaBI	GATNNNNATC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	214
BsaXI	ACNNNNNCTCC	2 cut(s)	371, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 505, 545
Bse1I	ACTGG	2 cut(s)	123, 496
Bse3DI	GCAATG	1 cut(s)	1023
Bse8I	GATNNNNATC	1 cut(s)	145
BseBI	CCWGG	2 cut(s)	216, 771
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	2 cut(s)	706, 1066
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	3 cut(s)	58, 505, 545
BseMI	GCAATG	1 cut(s)	1023
BseMII	CTCAG	3 cut(s)	273, 282, 491
BseNI	ACTGG	2 cut(s)	123, 496
BseRI	GAGGAG	2 cut(s)	818, 965
BseXI	GCAGC	3 cut(s)	188, 224, 927
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	1 cut(s)	789
BsiHKAI	GWGCWC	3 cut(s)	51, 157, 1132
BsiHKCI	CYCGRG	1 cut(s)	1125
BsiSI	CCGG	2 cut(s)	228, 411
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	58, 505, 545
BsmAI	GTCTC	2 cut(s)	192, 482
BsmFI	GGGAC	1 cut(s)	197
BsmI	GAATGC	2 cut(s)	415, 1065
BsnI	GGCC	1 cut(s)	789
BsoBI	CYCGRG	1 cut(s)	1125
Bsp1286I	GDGCHC	3 cut(s)	51, 157, 1132
Bsp143I	GATC	4 cut(s)	140, 691, 973, 1090
BspACI	CCGC	5 cut(s)	333, 567, 762, 947, 958
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	3 cut(s)	274, 283, 492
BspFNI	CGCG	1 cut(s)	333
BspPI	GGATC	1 cut(s)	1085
BsrDI	GCAATG	1 cut(s)	1023
BsrI	ACTGG	2 cut(s)	123, 496
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	4 cut(s)	140, 691, 973, 1090
BssSI	CACGAG	1 cut(s)	585
Bst2BI	CACGAG	1 cut(s)	585
Bst2UI	CCWGG	2 cut(s)	216, 771
Bst4CI	ACNGT	3 cut(s)	512, 727, 739
Bst6I	CTCTTC	1 cut(s)	447
BstC8I	GCNNGC	6 cut(s)	28, 335, 812, 945, 1030, 1083
BstDEI	CTNAG	4 cut(s)	206, 282, 291, 500
BstEII	GGTNACC	2 cut(s)	494, 667
BstENI	CCTNNNNNAGG	1 cut(s)	503
BstF5I	GGATG	2 cut(s)	706, 1066
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	4 cut(s)	143, 694, 976, 1093
BstMAI	GTCTC	2 cut(s)	192, 482
BstMBI	GATC	4 cut(s)	140, 691, 973, 1090
BstMWI	GCNNNNNNNGC	2 cut(s)	758, 1008
BstNI	CCWGG	2 cut(s)	216, 771
BstNSI	RCATGY	1 cut(s)	1032
BstPI	GGTNACC	2 cut(s)	494, 667
BstSCI	CCNGG	4 cut(s)	214, 226, 410, 769
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	188, 224, 927
BstV2I	GAAGAC	1 cut(s)	728
BsuRI	GGCC	1 cut(s)	789
BtsCI	GGATG	2 cut(s)	706, 1066
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	2 cut(s)	255, 786
Cac8I	GCNNGC	6 cut(s)	28, 335, 812, 945, 1030, 1083
CaiI	CAGNNNCTG	2 cut(s)	149, 785
CfoI	GCGC	1 cut(s)	135
CviAII	CATG	2 cut(s)	527, 1029
DdeI	CTNAG	4 cut(s)	206, 282, 291, 500
DpnI	GATC	4 cut(s)	142, 693, 975, 1092
DpnII	GATC	4 cut(s)	140, 691, 973, 1090
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	1130
Eco24I	GRGCYC	1 cut(s)	1132
Eco53kI	GAGCTC	1 cut(s)	1130
Eco57I	CTGAAG	1 cut(s)	365
Eco88I	CYCGRG	1 cut(s)	1125
Eco91I	GGTNACC	2 cut(s)	494, 667
EcoICRI	GAGCTC	1 cut(s)	1130
EcoNI	CCTNNNNNAGG	1 cut(s)	503
EcoO65I	GGTNACC	2 cut(s)	494, 667
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	2 cut(s)	214, 769
EcoT38I	GRGCYC	1 cut(s)	1132
FaeI	CATG	2 cut(s)	530, 1032
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 1004, 1036
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	2 cut(s)	526, 1028
FauI	CCCGC	1 cut(s)	326
FblI	GTMKAC	2 cut(s)	325, 741
Fnu4HI	GCNGC	5 cut(s)	177, 238, 762, 941, 958
FokI	GGATG	2 cut(s)	713, 1073
FriOI	GRGCYC	1 cut(s)	1132
Fsp4HI	GCNGC	5 cut(s)	177, 238, 762, 941, 958
FspBI	CTAG	2 cut(s)	426, 791
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	5 cut(s)	177, 238, 762, 941, 958
GsuI	CTGGAG	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	2 cut(s)	228, 411
HhaI	GCGC	1 cut(s)	135
Hin1II	CATG	2 cut(s)	530, 1032
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	326
HindII	GTYRAC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	5 cut(s)	36, 146, 210, 746, 1044
HpaII	CCGG	2 cut(s)	228, 411
HphI	GGTGA	3 cut(s)	488, 728, 976
Hpy166II	GTNNAC	3 cut(s)	197, 326, 742
Hpy188I	TCNGA	4 cut(s)	41, 145, 192, 345
Hpy188III	TCNNGA	8 cut(s)	150, 426, 446, 695, 865, 977, 1048, 1125
Hpy8I	GTNNAC	3 cut(s)	197, 326, 742
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	3 cut(s)	512, 727, 739
HpyCH4V	TGCA	4 cut(s)	779, 810, 1028, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	758, 1008
HpyF3I	CTNAG	4 cut(s)	206, 282, 291, 500
Hsp92II	CATG	2 cut(s)	530, 1032
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	4 cut(s)	140, 691, 973, 1090
LmnI	GCTCC	3 cut(s)	152, 826, 1037
Lsp1109I	GCAGC	3 cut(s)	188, 224, 927
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	426, 791
MaeIII	GTNAC	4 cut(s)	482, 494, 571, 667
MalI	GATC	4 cut(s)	142, 693, 975, 1092
MboI	GATC	4 cut(s)	140, 691, 973, 1090
MboII	GAAGA	7 cut(s)	115, 118, 358, 373, 434, 733, 1012
MhlI	GDGCHC	3 cut(s)	51, 157, 1132
MluCI	AATT	8 cut(s)	349, 397, 461, 613, 631, 674, 1055, 1100
MlyI	GAGTC	2 cut(s)	219, 755
MseI	TTAA	2 cut(s)	63, 1135
MspI	CCGG	2 cut(s)	228, 411
MspR9I	CCNGG	4 cut(s)	216, 228, 412, 771
Mva1269I	GAATGC	2 cut(s)	415, 1065
MvaI	CCWGG	2 cut(s)	216, 771
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	758, 1008
NciI	CCSGG	2 cut(s)	228, 412
NdeII	GATC	4 cut(s)	140, 691, 973, 1090
NlaIII	CATG	2 cut(s)	530, 1032
NmuCI	GTSAC	2 cut(s)	494, 571
NspI	RCATGY	1 cut(s)	1032
PaeI	GCATGC	1 cut(s)	1032
PcsI	WCGNNNNNNNCGW	2 cut(s)	483, 918
PctI	GAATGC	2 cut(s)	415, 1065
PfeI	GAWTC	3 cut(s)	36, 146, 1044
PflMI	CCANNNNNTGG	1 cut(s)	545
PkrI	GCNGC	5 cut(s)	178, 239, 763, 942, 959
PleI	GAGTC	2 cut(s)	218, 754
PpsI	GAGTC	2 cut(s)	218, 754
PsiI	TTATAA	2 cut(s)	396, 1118
Psp124BI	GAGCTC	1 cut(s)	1132
Psp6I	CCWGG	2 cut(s)	214, 769
PspEI	GGTNACC	2 cut(s)	494, 667
PspGI	CCWGG	2 cut(s)	214, 769
PstNI	CAGNNNCTG	2 cut(s)	149, 785
SacI	GAGCTC	1 cut(s)	1132
SalI	GTCGAC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	63, 1135
SatI	GCNGC	5 cut(s)	177, 238, 762, 941, 958
Sau3AI	GATC	4 cut(s)	140, 691, 973, 1090
SchI	GAGTC	2 cut(s)	219, 755
ScrFI	CCNGG	4 cut(s)	216, 228, 412, 771
SduI	GDGCHC	3 cut(s)	51, 157, 1132
SfaNI	GCATC	1 cut(s)	419
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SphI	GCATGC	1 cut(s)	1032
Sse9I	AATT	8 cut(s)	349, 397, 461, 613, 631, 674, 1055, 1100
SsiI	CCGC	5 cut(s)	333, 567, 762, 947, 958
SspMI	CTAG	2 cut(s)	426, 791
SstI	GAGCTC	1 cut(s)	1132
StyD4I	CCNGG	4 cut(s)	214, 226, 410, 769
TaaI	ACNGT	3 cut(s)	512, 727, 739
TaqI	TCGA	1 cut(s)	325
TasI	AATT	8 cut(s)	349, 397, 461, 613, 631, 674, 1055, 1100
TauI	GCSGC	2 cut(s)	764, 960
TfiI	GAWTC	3 cut(s)	36, 146, 1044
Tru1I	TTAA	2 cut(s)	63, 1135
Tru9I	TTAA	2 cut(s)	63, 1135
TscAI	CASTG	2 cut(s)	262, 786
TseFI	GTSAC	2 cut(s)	494, 571
TseI	GCWGC	3 cut(s)	176, 237, 940
Tsp45I	GTSAC	2 cut(s)	494, 571
TspDTI	ATGAA	5 cut(s)	232, 236, 666, 844, 1012
TspGWI	ACGGA	1 cut(s)	392
TspRI	CASTG	2 cut(s)	262, 786
Van91I	CCANNNNNTGG	1 cut(s)	545
XagI	CCTNNNNNAGG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	461, 613, 674
XbaI	TCTAGA	1 cut(s)	425
XceI	RCATGY	1 cut(s)	1032
XmiI	GTMKAC	2 cut(s)	325, 741
XspI	CTAG	2 cut(s)	426, 791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.