Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Reverse (-)

11419278 .. 11428904

Gene Structure 9627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1061700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2535 bp

ATGGAGTCGTACGCGCTACATTTGGCCATGGCGGCTCTGGTTGGAGCTTCGGTGGTGGCTGCGTCGGCCTATTACATGCACCGCAAAACCCTAACTCAGCTTTTGGAGTTCGCCAAGACGGTGGAGAAGGAGAGGGAGGGTGACTCCGACGGCGGTGGCGGTGGCGACTCGCCGCAGAACATGAAGAAGCGTAGGAGTCACGCGCGGCGCAAGGGAAACGGATATTACCGGCGAAACGCGGCGTCTTTACCGGACGTGACGGCGATTTCTGGAGGGATTGACGGTGATGATCATAGGCGCAACGGATTTCTACCCGTCGACGGTATTCCGGCCGGGTTGCCGAGGCTGCACACTCTCCCGGAAGGGAAATCTACTGAGCTTGCGAATTCAGTTAAGAGAACCGGTAGTCTTATCCGACCAATTTCTCCCAAGTCTCCAGTTGCAAGTGCAAGTGCCTTTGAGAGTGTAGAAGGATCAGATGATGAAGACAACATGACTGACAATTCTAAACTTGGCACGGAGGGGCCAGATGGTAAGATAATATATGAAAATTTACCGAACCATGTTAATGCCAATGGAGAGCAAATACCTATAGCTCCTACAAGTATGATTAGGTCCCATAGTGTATCTGGTGACCTGCACGGTGTCCAGCCTGATCCAATTACCGCTGATATCCTGAGGAAAGAGCCAGAACAAGAGACTTTTGCACGACTTAAAATTACTCCAATTGAAGTGCCATCTAGCGATGAAGCGGAGGTCTATGTGGTTCTTCAAGAATGCCTCGAATTGCGAAAAAGATATTTATTCACTGAGACAGTTGCTCCGTGGGAGAAAGAAATTATATCAGACCCAAGTACCCCAAAACCTAACCCAGCTCCATTTTCTTATACTTCTGAGGGGAAGTCTGATCATTATTTCGAAATGCAAGATGGGGTTGTTCATGTGTATCCAAATAAAGACTCAAAAGAACTTTTTCCTGTTGCTGATGCAACCACCTTTTTCACTGACCTACATCACATACTCCGAGTTACAGCAGCAGGGAATATCAGAACTTTATGCCATCATCGGCTGAATCTTCTGGAACAAAAATTCAATCTTCACTTAATGCTTAATGCGGATAGGGAGTTTCTGGCTCAGAAGAGTGCTCCTCATCGTGACTTTTATAATGTCAGAAAAGTAGATACACATGTTCATCACTCAGCATGCATGAACCAGAAACATCTTTTGAGGTTTATAAAATCAAAGTTGAGGAAGGAGCCTGATGAGGTTGTAATATTTAGAGATGGAACCTATTTGACCTTGAAAGAGGTTTTTGAGAGTTTGGATTTGACTGGGTACGACCTAAATGTTGACCTTTTGGATGTTCATGCTGACAAGAGCACGTTTCATCGTTTTGATAAGTTTAATCTTAAGTACAACCCCTGTGGTCAAAGTAGGCTCCGGGAGATTTTCCTTAAGCAGGATAATCTTATTCAAGGACGTTTCCTTGCTGAGCTGACAAAACAAGTGTTTTCTGATCTTGCTGCCAGTAAATATCAGATGGCTGAGTACAGGATATCGATATATGGTAGGAAGCAGAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTTTGGTTGATTCAGCTGCCCCGGCTGTACAATATATACAAGGAAATGGGAATTGTAACATCATTTCAGAACATTCTCGACAATATCTTTATTCCACTGTTTGAGGTTACTGTAGATCCAGATTCCCATCCACAGTTGCACGTTTTCCTGAAACAGGTTGTGGGGTTAGATTTGGTGGATGACGAAAGCAAACCTGAAAGACGCCCCACAAAACACATGCCAACGCCAGCACAATGGACCAATGTATTCAATCCTGCATTTTCATACTACGTGTACTACTGTTATGCTAATCTCTACACATTAAACAAGCTTCGTGAATCTAAGGGCATGACGACAATCAATCTCCGTCCACATTCTGGGGAGGCTGGTGACATTGACCACCTTGCTGCAACCTTTCTTACCGCAACTAATATTGCGCATGGAATCAATTTGAGAAAATCTCCTGTACTTCAATATCTGTATTATTTATCCCAGATTGGTCTGGCTATGTCACCCCTGAGCAACAATTCGTTGTTTTTGGACTACCATCGGAATCCTTTTCCTATGTTTTTCTTACGGGGTCTTAATGTTTCTCTCTCCACCGATGATCCTCTCCAAATCCACTTAACAAAAGAGCCTTTGGTGGAAGAATATAGTATAGCTGCTTCTGTTTGGAAATTGAGCTCATGTGATCTATGTGAAATTGCCCGTAATTCGGTCTACCAATCAGGATTTTCACATGCATTGAAGTCGCACTGGATCGGCAGAGAGTACTACAAGAGAGGACCAGATGGAAATGATATCCACAGAACAAATGTGCCTCATATCCGGTTGGAATTTCGTGATACGATCTGGAGAGACGAGATGCAACAGGTCTATCTCGGCAAGGCCATTATCCCAAAAGAAGTCGACAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

845

Amino Acids

95.97

Weight (kDa)

6.34

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	241 - 831	0.0	AMP deaminase
A_deaminase	PF00962	660 - 785	3.3e-09	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1164, 1235
Acc16I	TGCGCA	1 cut(s)	2055
Acc36I	ACCTGC	1 cut(s)	645
AccB7I	CCANNNNNTGG	1 cut(s)	1994
AccI	GTMKAC	3 cut(s)	318, 2337, 2526
AccII	CGCG	4 cut(s)	14, 203, 205, 239
AclWI	GGATC	5 cut(s)	481, 650, 1748, 2219, 2384
AcoI	YGGCCR	2 cut(s)	24, 330
AcsI	RAATTY	4 cut(s)	385, 550, 1088, 2453
AcyI	GRCGYC	2 cut(s)	242, 1840
AfiI	CCNNNNNNNGG	5 cut(s)	320, 1459, 1792, 1994, 2332
AflII	CTTAAG	2 cut(s)	1409, 1454
AflIII	ACRYGT	2 cut(s)	1186, 1908
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	8 cut(s)	731, 773, 1093, 1303, 1475, 1888, 2090, 2365
AjiI	CACGTC	1 cut(s)	256
Alw21I	GWGCWC	3 cut(s)	1147, 1382, 2303
Alw26I	GTCTC	4 cut(s)	438, 692, 806, 2469
AlwI	GGATC	5 cut(s)	481, 650, 1748, 2219, 2384
AoxI	GGCC	5 cut(s)	24, 66, 330, 524, 2505
ApeKI	GCWGC	7 cut(s)	59, 346, 1034, 1523, 1654, 2024, 2279
ApoI	RAATTY	4 cut(s)	385, 550, 1088, 2453
AsiGI	ACCGGT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	972
AspLEI	GCGC	5 cut(s)	16, 205, 210, 300, 2056
AspS9I	GGNCC	5 cut(s)	524, 615, 1588, 1875, 2402
AsuC2I	CCSGG	4 cut(s)	334, 359, 1442, 1660
AsuHPI	GGTGA	5 cut(s)	152, 296, 644, 2018, 2121
AsuII	TTCGAA	1 cut(s)	918
AvaII	GGWCC	4 cut(s)	615, 1588, 1875, 2402
AxyI	CCTNAGG	1 cut(s)	677
BaeI	ACNNNNGTAYC	4 cut(s)	838, 871, 1173, 1206
BalI	TGGCCA	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	2303
BarI	GAAGNNNNNNTAC	2 cut(s)	2266, 2298
BbsI	GAAGAC	1 cut(s)	492
Bbv12I	GWGCWC	3 cut(s)	1147, 1382, 2303
BbvI	GCAGC	7 cut(s)	46, 333, 1046, 1510, 1641, 2011, 2266
BccI	CCATC	9 cut(s)	524, 745, 923, 1068, 1277, 1534, 1773, 2172, 2402
BceAI	ACGGC	2 cut(s)	166, 276
BcgI	CGANNNNNNTGC	2 cut(s)	2349, 2383
BciVI	GTATCC	1 cut(s)	957
BclI	TGATCA	2 cut(s)	289, 907
BcnI	CCSGG	4 cut(s)	334, 359, 1442, 1660
BcoDI	GTCTC	4 cut(s)	438, 692, 806, 2469
BfaI	CTAG	2 cut(s)	741, 1599
BfmI	CTRYAG	2 cut(s)	591, 1749
BfrI	CTTAAG	2 cut(s)	1409, 1454
BfuAI	ACCTGC	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	957
BglI	GCCNNNNNGGC	1 cut(s)	32
BlpI	GCTNAGC	1 cut(s)	1491
BmcAI	AGTACT	1 cut(s)	2390
Bme1390I	CCNGG	4 cut(s)	334, 359, 1442, 1660
Bme18I	GGWCC	4 cut(s)	615, 1588, 1875, 2402
BmgBI	CACGTC	1 cut(s)	256
BmgT120I	GGNCC	5 cut(s)	524, 615, 1588, 1875, 2402
BmiI	GGNNCC	6 cut(s)	525, 617, 1257, 1288, 1439, 1589
BmrFI	CCNGG	4 cut(s)	334, 359, 1442, 1660
BmrI	ACTGGG	1 cut(s)	1341
BmsI	GCATC	2 cut(s)	976, 2472
BmuI	ACTGGG	1 cut(s)	1341
BpiI	GAAGAC	1 cut(s)	492
BplI	GAGNNNNNCTC	6 cut(s)	128, 160, 1132, 1164, 2062, 2094
BpmI	CTGGAG	3 cut(s)	291, 420, 2491
Bpu10I	CCTNAGC	1 cut(s)	2135
Bpu1102I	GCTNAGC	1 cut(s)	1491
Bpu14I	TTCGAA	1 cut(s)	918
BpuMI	CCSGG	4 cut(s)	334, 359, 1442, 1660
Bsa29I	ATCGAT	1 cut(s)	1559
BsaAI	YACGTR	1 cut(s)	1909
BsaBI	GATNNNNATC	1 cut(s)	1764
BsaHI	GRCGYC	2 cut(s)	242, 1840
BsaJI	CCNNGG	4 cut(s)	27, 341, 824, 1658
BsaWI	WCCGGW	3 cut(s)	250, 401, 2445
BsaXI	ACNNNNNCTCC	4 cut(s)	36, 66, 805, 835
Bsc4I	CCNNNNNNNGG	5 cut(s)	320, 1459, 1792, 1994, 2332
Bse118I	RCCGGY	2 cut(s)	228, 401
Bse1I	ACTGG	4 cut(s)	437, 1336, 1527, 2378
Bse21I	CCTNAGG	1 cut(s)	677
Bse8I	GATNNNNATC	1 cut(s)	1764
BseCI	ATCGAT	1 cut(s)	1559
BseDI	CCNNGG	4 cut(s)	27, 341, 824, 1658
BseGI	GGATG	3 cut(s)	1366, 1765, 1822
BseJI	GATNNNNATC	1 cut(s)	1764
BseLI	CCNNNNNNNGG	5 cut(s)	320, 1459, 1792, 1994, 2332
BseNI	ACTGG	4 cut(s)	437, 1336, 1527, 2378
BseRI	GAGGAG	1 cut(s)	1137
BseX3I	CGGCCG	1 cut(s)	330
BseXI	GCAGC	7 cut(s)	46, 333, 1046, 1510, 1641, 2011, 2266
BseYI	CCCAGC	1 cut(s)	871
BsgI	GTGCAG	2 cut(s)	332, 623
Bsh1236I	CGCG	4 cut(s)	14, 203, 205, 239
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	5 cut(s)	26, 68, 332, 526, 2507
BshTI	ACCGGT	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	1559
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	3 cut(s)	1147, 1382, 2303
BsiSI	CCGG	9 cut(s)	229, 251, 329, 333, 359, 402, 1441, 1660, 2446
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	2 cut(s)	601, 1601
BslI	CCNNNNNNNGG	5 cut(s)	320, 1459, 1792, 1994, 2332
BsmAI	GTCTC	4 cut(s)	438, 692, 806, 2469
BsmBI	CGTCTC	1 cut(s)	2469
BsmFI	GGGAC	2 cut(s)	601, 1601
BsmI	GAATGC	1 cut(s)	782
BsnI	GGCC	5 cut(s)	26, 68, 332, 526, 2507
Bsp119I	TTCGAA	1 cut(s)	918
Bsp1286I	GDGCHC	3 cut(s)	1147, 1382, 2303
Bsp1407I	TGTACA	2 cut(s)	1623, 1665
Bsp1720I	GCTNAGC	1 cut(s)	1491
Bsp19I	CCATGG	1 cut(s)	27
BspANI	GGCC	5 cut(s)	26, 68, 332, 526, 2507
BspDI	ATCGAT	1 cut(s)	1559
BspFNI	CGCG	4 cut(s)	14, 203, 205, 239
BspLI	GGNNCC	6 cut(s)	525, 617, 1257, 1288, 1439, 1589
BspMI	ACCTGC	1 cut(s)	645
BspPI	GGATC	5 cut(s)	481, 650, 1748, 2219, 2384
BspT104I	TTCGAA	1 cut(s)	918
BspTI	CTTAAG	2 cut(s)	1409, 1454
BsrFI	RCCGGY	2 cut(s)	228, 401
BsrGI	TGTACA	2 cut(s)	1623, 1665
BsrI	ACTGG	4 cut(s)	437, 1336, 1527, 2378
BssAI	RCCGGY	2 cut(s)	228, 401
BssECI	CCNNGG	4 cut(s)	27, 341, 824, 1658
BssNI	GRCGYC	2 cut(s)	242, 1840
BssT1I	CCWWGG	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	1133
BstACI	GRCGYC	2 cut(s)	242, 1840
BstAFI	CTTAAG	2 cut(s)	1409, 1454
BstAUI	TGTACA	2 cut(s)	1623, 1665
BstBAI	YACGTR	1 cut(s)	1909
BstBI	TTCGAA	1 cut(s)	918
BstC8I	GCNNGC	3 cut(s)	381, 1204, 1866
BstDSI	CCRYGG	2 cut(s)	27, 824
BstEII	GGTNACC	1 cut(s)	632
BstENI	CCTNNNNNAGG	2 cut(s)	1457, 1790
BstF5I	GGATG	3 cut(s)	1366, 1765, 1822
BstFNI	CGCG	4 cut(s)	14, 203, 205, 239
BstHHI	GCGC	5 cut(s)	16, 205, 210, 300, 2056
BstMAI	GTCTC	4 cut(s)	438, 692, 806, 2469
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 65, 346, 1660
BstNSI	RCATGY	5 cut(s)	79, 1190, 1206, 1858, 2360
BstPI	GGTNACC	1 cut(s)	632
BstSCI	CCNGG	4 cut(s)	332, 357, 1440, 1658
BstSFI	CTRYAG	2 cut(s)	591, 1749
BstUI	CGCG	4 cut(s)	14, 203, 205, 239
BstV1I	GCAGC	7 cut(s)	46, 333, 1046, 1510, 1641, 2011, 2266
BstV2I	GAAGAC	1 cut(s)	492
BstX2I	RGATCY	1 cut(s)	1753
BstXI	CCANNNNNNTGG	2 cut(s)	121, 1872
BstYI	RGATCY	1 cut(s)	1753
BstZI	CGGCCG	1 cut(s)	330
Bsu15I	ATCGAT	1 cut(s)	1559
Bsu36I	CCTNAGG	1 cut(s)	677
BsuI	GTATCC	1 cut(s)	957
BsuRI	GGCC	5 cut(s)	26, 68, 332, 526, 2507
BsuTUI	ATCGAT	1 cut(s)	1559
BtgI	CCRYGG	2 cut(s)	27, 824
BtgZI	GCGATG	1 cut(s)	759
BtrI	CACGTC	1 cut(s)	256
BtsCI	GGATG	3 cut(s)	1366, 1765, 1822
BtsIMutI	CAGTG	5 cut(s)	807, 1002, 1633, 1733, 2371
BveI	ACCTGC	1 cut(s)	645
Cac8I	GCNNGC	3 cut(s)	381, 1204, 1866
CfoI	GCGC	5 cut(s)	16, 205, 210, 300, 2056
Cfr10I	RCCGGY	2 cut(s)	228, 401
Cfr13I	GGNCC	5 cut(s)	524, 615, 1588, 1875, 2402
ClaI	ATCGAT	1 cut(s)	1559
CseI	GACGC	3 cut(s)	51, 231, 1848
CspAI	ACCGGT	1 cut(s)	401
CspCI	CAANNNNNGTGG	2 cut(s)	1405, 1440
EaeI	YGGCCR	2 cut(s)	24, 330
EagI	CGGCCG	1 cut(s)	330
Eam1104I	CTCTTC	1 cut(s)	1133
EarI	CTCTTC	1 cut(s)	1133
Ecl136II	GAGCTC	1 cut(s)	2301
EclXI	CGGCCG	1 cut(s)	330
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	2303
Eco32I	GATATC	3 cut(s)	673, 1557, 2419
Eco47I	GGWCC	4 cut(s)	615, 1588, 1875, 2402
Eco52I	CGGCCG	1 cut(s)	330
Eco53kI	GAGCTC	1 cut(s)	2301
Eco81I	CCTNAGG	1 cut(s)	677
Eco91I	GGTNACC	1 cut(s)	632
EcoICRI	GAGCTC	1 cut(s)	2301
EcoNI	CCTNNNNNAGG	2 cut(s)	1457, 1790
EcoO109I	RGGNCCY	1 cut(s)	615
EcoO65I	GGTNACC	1 cut(s)	632
EcoRI	GAATTC	1 cut(s)	385
EcoRV	GATATC	3 cut(s)	673, 1557, 2419
EcoT14I	CCWWGG	1 cut(s)	27
EcoT22I	ATGCAT	2 cut(s)	1208, 2362
EcoT38I	GRGCYC	1 cut(s)	2303
ErhI	CCWWGG	1 cut(s)	27
Esp3I	CGTCTC	1 cut(s)	2469
FaqI	GGGAC	2 cut(s)	601, 1601
FbaI	TGATCA	2 cut(s)	289, 907
FblI	GTMKAC	3 cut(s)	318, 2337, 2526
FokI	GGATG	3 cut(s)	1373, 1752, 1829
FriOI	GRGCYC	1 cut(s)	2303
FspBI	CTAG	2 cut(s)	741, 1599
FspI	TGCGCA	1 cut(s)	2055
GlaI	GCGC	5 cut(s)	15, 204, 209, 299, 2055
GsaI	CCCAGC	1 cut(s)	875
GsuI	CTGGAG	3 cut(s)	291, 420, 2491
HaeIII	GGCC	5 cut(s)	26, 68, 332, 526, 2507
HapII	CCGG	9 cut(s)	229, 251, 329, 333, 359, 402, 1441, 1660, 2446
HgaI	GACGC	3 cut(s)	51, 231, 1848
HhaI	GCGC	5 cut(s)	16, 205, 210, 300, 2056
Hin1I	GRCGYC	2 cut(s)	242, 1840
Hin6I	GCGC	5 cut(s)	14, 203, 208, 298, 2054
HinP1I	GCGC	5 cut(s)	14, 203, 208, 298, 2054
HincII	GTYRAC	3 cut(s)	319, 1351, 2527
HindII	GTYRAC	3 cut(s)	319, 1351, 2527
HindIII	AAGCTT	1 cut(s)	1946
HpaII	CCGG	9 cut(s)	229, 251, 329, 333, 359, 402, 1441, 1660, 2446
HphI	GGTGA	5 cut(s)	152, 296, 644, 2018, 2121
Hpy166II	GTNNAC	7 cut(s)	319, 1351, 1612, 1912, 1988, 2338, 2527
Hpy8I	GTNNAC	7 cut(s)	319, 1351, 1612, 1912, 1988, 2338, 2527
Hpy99I	CGWCG	4 cut(s)	67, 152, 320, 323
HpyAV	CCTTC	4 cut(s)	121, 356, 464, 1246
HpyCH4IV	ACGT	5 cut(s)	255, 1382, 1480, 1779, 1908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 65, 346, 1660
HpySE526I	ACGT	5 cut(s)	255, 1382, 1480, 1779, 1908
Hsp92I	GRCGYC	2 cut(s)	242, 1840
HspAI	GCGC	5 cut(s)	14, 203, 208, 298, 2054
Ksp22I	TGATCA	2 cut(s)	289, 907
LmnI	GCTCC	7 cut(s)	44, 601, 826, 880, 1150, 1255, 1443
Lsp1109I	GCAGC	7 cut(s)	46, 333, 1046, 1510, 1641, 2011, 2266
LweI	GCATC	2 cut(s)	976, 2472
MaeI	CTAG	2 cut(s)	741, 1599
MaeII	ACGT	5 cut(s)	255, 1382, 1480, 1779, 1908
MboII	GAAGA	7 cut(s)	196, 497, 761, 1067, 1088, 1150, 2276
MfeI	CAATTG	1 cut(s)	726
MflI	RGATCY	1 cut(s)	1753
MhlI	GDGCHC	3 cut(s)	1147, 1382, 2303
MlsI	TGGCCA	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	5 cut(s)	14, 137, 161, 205, 953
MmeI	TCCRAC	5 cut(s)	22, 171, 439, 1583, 2430
Mox20I	TGGCCA	1 cut(s)	26
Mph1103I	ATGCAT	2 cut(s)	1208, 2362
MroXI	GAANNNNTTC	1 cut(s)	972
MscI	TGGCCA	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	567
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	668, 1654
MspCI	CTTAAG	2 cut(s)	1409, 1454
MspI	CCGG	9 cut(s)	229, 251, 329, 333, 359, 402, 1441, 1660, 2446
MspR9I	CCNGG	4 cut(s)	334, 359, 1442, 1660
MteI	GCGCNGCGC	1 cut(s)	206
MunI	CAATTG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	782
MvnI	CGCG	4 cut(s)	14, 203, 205, 239
MwoI	GCNNNNNNNGC	4 cut(s)	32, 65, 346, 1660
NciI	CCSGG	4 cut(s)	334, 359, 1442, 1660
NcoI	CCATGG	1 cut(s)	27
NlaIV	GGNNCC	6 cut(s)	525, 617, 1257, 1288, 1439, 1589
NmeAIII	GCCGAG	2 cut(s)	366, 2478
NmuCI	GTSAC	7 cut(s)	140, 197, 256, 632, 1154, 2006, 2127
NsbI	TGCGCA	1 cut(s)	2055
NsiI	ATGCAT	2 cut(s)	1208, 2362
NspI	RCATGY	5 cut(s)	79, 1190, 1206, 1858, 2360
NspV	TTCGAA	1 cut(s)	918
PaeI	GCATGC	1 cut(s)	1206
PciI	ACATGT	1 cut(s)	1186
PctI	GAATGC	1 cut(s)	782
PdmI	GAANNNNTTC	1 cut(s)	972
PfeI	GAWTC	6 cut(s)	1072, 1648, 1760, 1955, 2061, 2170
Pfl23II	CGTACG	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	1994
PfoI	TCCNGGA	2 cut(s)	357, 1440
PinAI	ACCGGT	1 cut(s)	401
PleI	GAGTC	5 cut(s)	13, 137, 161, 204, 953
PpsI	GAGTC	5 cut(s)	13, 137, 161, 204, 953
Ppu21I	YACGTR	1 cut(s)	1909
PpuMI	RGGWCCY	1 cut(s)	615
PscI	ACATGT	1 cut(s)	1186
PsiI	TTATAA	2 cut(s)	1164, 1235
Psp124BI	GAGCTC	1 cut(s)	2303
Psp5II	RGGWCCY	1 cut(s)	615
PspEI	GGTNACC	1 cut(s)	632
PspFI	CCCAGC	1 cut(s)	871
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	6 cut(s)	525, 617, 1257, 1288, 1439, 1589
PspPI	GGNCC	5 cut(s)	524, 615, 1588, 1875, 2402
PspPPI	RGGWCCY	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	1753
PvuII	CAGCTG	1 cut(s)	1654
RseI	CAYNNNNRTG	1 cut(s)	567
SacI	GAGCTC	1 cut(s)	2303
SalI	GTCGAC	2 cut(s)	317, 2525
Sau96I	GGNCC	5 cut(s)	524, 615, 1588, 1875, 2402
ScaI	AGTACT	1 cut(s)	2390
SchI	GAGTC	5 cut(s)	14, 137, 161, 205, 953
ScrFI	CCNGG	4 cut(s)	334, 359, 1442, 1660
SduI	GDGCHC	3 cut(s)	1147, 1382, 2303
SfaNI	GCATC	2 cut(s)	976, 2472
SfcI	CTRYAG	2 cut(s)	591, 1749
SfuI	TTCGAA	1 cut(s)	918
SgrDI	CGTCGACG	1 cut(s)	317
SinI	GGWCC	4 cut(s)	615, 1588, 1875, 2402
SmiMI	CAYNNNNRTG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	1409, 1454
SmoI	CTYRAG	2 cut(s)	1409, 1454
SphI	GCATGC	1 cut(s)	1206
SspI	AATATT	2 cut(s)	1275, 2050
SspMI	CTAG	2 cut(s)	741, 1599
SstI	GAGCTC	1 cut(s)	2303
StyD4I	CCNGG	4 cut(s)	332, 357, 1440, 1658
StyI	CCWWGG	1 cut(s)	27
TaiI	ACGT	5 cut(s)	258, 1385, 1483, 1782, 1911
TaqI	TCGA	6 cut(s)	318, 783, 918, 1559, 1716, 2526
TaqII	GACCGA	1 cut(s)	2323
TatI	WGTACW	7 cut(s)	1413, 1548, 1623, 1665, 1911, 2083, 2388
TauI	GCSGC	4 cut(s)	35, 175, 208, 242
TfiI	GAWTC	6 cut(s)	1072, 1648, 1760, 1955, 2061, 2170
TscAI	CASTG	5 cut(s)	814, 1009, 1633, 1740, 2378
TseFI	GTSAC	7 cut(s)	140, 197, 256, 632, 1154, 2006, 2127
TseI	GCWGC	7 cut(s)	59, 346, 1034, 1523, 1654, 2024, 2279
Tsp45I	GTSAC	7 cut(s)	140, 197, 256, 632, 1154, 2006, 2127
TspGWI	ACGGA	5 cut(s)	234, 318, 533, 813, 1973
TspRI	CASTG	5 cut(s)	814, 1009, 1633, 1740, 2378
Van91I	CCANNNNNTGG	1 cut(s)	1994
Vha464I	CTTAAG	2 cut(s)	1409, 1454
VpaK11BI	GGWCC	4 cut(s)	615, 1588, 1875, 2402
XagI	CCTNNNNNAGG	2 cut(s)	1457, 1790
XapI	RAATTY	4 cut(s)	385, 550, 1088, 2453
XceI	RCATGY	5 cut(s)	79, 1190, 1206, 1858, 2360
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 626
XmiI	GTMKAC	3 cut(s)	318, 2337, 2526
XmnI	GAANNNNTTC	1 cut(s)	972
XspI	CTAG	2 cut(s)	741, 1599
ZrmI	AGTACT	1 cut(s)	2390
Zsp2I	ATGCAT	2 cut(s)	1208, 2362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.