Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Reverse (-)

31937274 .. 31938792

Gene Structure 1519 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24392

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGACACTGGCAAGTACCATTTCTTAGAGTTGAATCCTCAGTTGCAGAAGTTCAATCTTCACTTAATGCTTAATGCAGATAAGGAATTTCTGGCCCAAAAAAGTGCTCCACATCGTGACTTTTATAATGTTAGGAACGTCGATATCCATGTTCATCACTTGGCATGCATGAACCAGAAGCATCTTTTGAGGTTTATAAAGTCAAAGTTGAGGAAGGAGCCTGATGAGGTTGTAATATTTCGAGATGGCACCTATTTGACCTTGAGAGAAGTTTTTGAGAGTCTGGATTTGACTGGTATTGGATTCTCAAGCCATGCATGGCTTTTGAGATGTTATTTCTGTCAAGTCTTAAGAGGCATTTTCATGATCATCTTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

126

Amino Acids

14.99

Weight (kDa)

8.74

Isoelectric Point (pI)

26.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	8 - 100	3.6e-41	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	126, 197
AccB1I	GGYRCC	1 cut(s)	248
AcsI	RAATTY	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	116
AfaI	GTAC	1 cut(s)	17
AflII	CTTAAG	1 cut(s)	349
AgsI	TTSAA	2 cut(s)	34, 55
Alw21I	GWGCWC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	93
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	94
BanI	GGYRCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	1 cut(s)	239
BclI	TGATCA	1 cut(s)	366
BfrI	CTTAAG	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	219, 250
BmsI	GCATC	1 cut(s)	190
BpuEI	CTTGAG	2 cut(s)	283, 292
Bse1I	ACTGG	2 cut(s)	13, 298
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	2 cut(s)	13, 298
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	366
BspANI	GGCC	1 cut(s)	95
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	2 cut(s)	219, 250
BspT107I	GGYRCC	1 cut(s)	248
BspTI	CTTAAG	1 cut(s)	349
BsrI	ACTGG	2 cut(s)	13, 298
BssMI	GATC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	2 cut(s)	25, 39
BstKTI	GATC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	95
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	1 cut(s)	166
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	6 cut(s)	149, 165, 169, 314, 318, 364
CviJI	RGCY	4 cut(s)	95, 220, 312, 322
CviKI_1	RGCY	4 cut(s)	95, 220, 312, 322
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	2 cut(s)	25, 39
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
DraIII	CACNNNGTG	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	145
EcoRV	GATATC	1 cut(s)	145
EcoT22I	ATGCAT	2 cut(s)	170, 319
FaeI	CATG	6 cut(s)	152, 168, 172, 317, 321, 367
FaiI	YATR	8 cut(s)	126, 150, 166, 170, 197, 315, 319, 365
FatI	CATG	6 cut(s)	148, 164, 168, 313, 317, 363
FbaI	TGATCA	1 cut(s)	366
HaeIII	GGCC	1 cut(s)	95
Hin1II	CATG	6 cut(s)	152, 168, 172, 317, 321, 367
HinfI	GANTC	3 cut(s)	34, 280, 303
Hpy188III	TCNNGA	4 cut(s)	116, 242, 284, 364
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	46, 77, 168, 317
HpyF3I	CTNAG	2 cut(s)	25, 39
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	6 cut(s)	152, 168, 172, 317, 321, 367
Ksp22I	TGATCA	1 cut(s)	366
Kzo9I	GATC	1 cut(s)	366
LmnI	GCTCC	2 cut(s)	112, 217
LpnPI	CCDG	5 cut(s)	77, 188, 234, 269, 279
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MboII	GAAGA	1 cut(s)	50
MhlI	GDGCHC	1 cut(s)	109
MluCI	AATT	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	5 cut(s)	48, 183, 204, 220, 347
Mph1103I	ATGCAT	2 cut(s)	170, 319
MseI	TTAA	3 cut(s)	65, 72, 350
MslI	CAYNNNNRTG	1 cut(s)	362
MspCI	CTTAAG	1 cut(s)	349
NdeII	GATC	1 cut(s)	366
NlaIII	CATG	6 cut(s)	152, 168, 172, 317, 321, 367
NlaIV	GGNNCC	2 cut(s)	219, 250
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	170, 319
NspI	RCATGY	1 cut(s)	168
PaeI	GCATGC	1 cut(s)	168
PagI	TCATGA	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	34, 303
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PsiI	TTATAA	2 cut(s)	126, 197
PspN4I	GGNNCC	2 cut(s)	219, 250
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	3 cut(s)	65, 72, 350
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	141, 194, 231, 254, 263
SfaNI	GCATC	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	3 cut(s)	262, 307, 349
SmoI	CTYRAG	3 cut(s)	262, 307, 349
SphI	GCATGC	1 cut(s)	168
Sse9I	AATT	1 cut(s)	86
SspI	AATATT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	141
TaqI	TCGA	2 cut(s)	141, 241
TasI	AATT	1 cut(s)	86
TfiI	GAWTC	2 cut(s)	34, 303
Tru1I	TTAA	3 cut(s)	65, 72, 350
Tru9I	TTAA	3 cut(s)	65, 72, 350
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	143, 185, 352
TspRI	CASTG	1 cut(s)	13
Vha464I	CTTAAG	1 cut(s)	349
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	168
Zsp2I	ATGCAT	2 cut(s)	170, 319

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.