Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Forward (+)

9933139 .. 9940757

Gene Structure 7619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG120100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGAGTCGTACGCGGTACATTTGGCCATGGCGGCTCTCGTCGGGGCGTCGCTGGTGGCCGTCTCGGCTTACTACATGCACCGGAAGACCCTAACTCAGCTGCTGGAGTTTGCGAAGACGGTGGAGAGGGAGAGGGAGCGGGAGGAGAACTCCGATGGAGGCGGCGGCGGCGGGGACTCGCCGCAGCTCATGAAGAAGCGTAAGGGACACGGGCGGCGCAAAGGCGGCGGGTATTACCGGCGTGGCTCGGCCTCTTTGCCGGACGTTACGGCGATTTCCGGCGGGGTTGACGGGAATGGAATGGTGGACGGTATTCCGGCTGGGTTGCCGAGGCTGCACACGCTTCCGGAAGGAAAATCGGCTCAGCCGGTGGGTTCAGCTAAGAGAACTAGTATCAGACCTATTTCTCCCAAGTCTCCAGTTGCAAGCGCTAGTGCCTTTGAGAGCGTTGAAGGTTCGGATGATGAAGATAATTTGACTGACAATGCTAAGGGGCCAGATTTACCAAACCATGTTACTGCCAATGGAGAGCAAATTGCTATAGCTGCTTCAAGTATGATTAGGTCCCATTCTGTATCTGGTGATCTGCATGGTGTCCAGCCTGATCCAATTGCAGCTGACATTCTAAGGAAAGAGCCTGAGCAAGAAACTTTTGCACGACTAAAAATTACTCCTACTGAAGTACCATCACCTGATGAAATAGAGGTTTATGTGGTTCTTCAAGAATGCCTTGAAATGCGAAAGAGATATGTATTCAGTGAGGCAGTTGCTCCATGGGAGAGGGAAGTTATATCTGATCCCAGTACCCCAAAGCCTAACCCAGAACCATTTTTCTACGCTTCTGAGGGAAAGTCTGATCATCATTTTGAGATGCAAGATGGAGTAATTCACGTGTATCCACATAAAGATTCAAAAGAAGAGCTTTATCCTGTTGCTGATGCAACTACCTTTTTCACTGACCTTCACCATATACTTAGAGTTATAGCAGCAGGGAATATCAGAACTTTATGCCATCATCGCTTGAATCTTTTGGAACAAAAATTCAATCTTCACTTAATGCTTAATGCGGATAAGGAATTTCTGGCCCAGAAAAGTGCTCCACATCGTGACTTTTATAATGTTAGGAAAGTTGATACCCATGTTCATCACTCGGCATGCATGAACCAGAAGCATCTTTTGAGGTTTATAAAGTCAAAGTTGAGGAAGGAGCCTGATGAGGTTGTAATATTTCGAGATGGCACCTATTTGACCTTGAGAGAAGTTTTTGAGAGTCTGGATTTGACTGGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATCTCAAGTACAACCCCTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTCTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGTACAGAATATCAATATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTATGGTTGATACAGCTGCCACGGCTGTACAATATATACAAGGAAATGGGGATAGTGACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCATCCACAGTTGCATGTTTTTCTGAAACAGGTTGTTGGGTTAGATTTGGTCGATGATGAAAGCAAACCTGAAAGACGGCCCACAAAACACATGCCAACTCCAGCACAATGGACAAATGTTTTCAATCCTGCATTTTCGTACTATGTGTACTATTGTTATGCTAATCTCTACACATTAAACAAGCTTCGTGAATCGAAGGGCATGACAACCATCAAATTCCGTCCACATTCTGGGGAGGCTGGGGACATTGACCACCTTGCTGCAACGTTTCTTACTGCGACTAACATCGCACACGGAATCAATTTGAGGAAGTCTCCTGTGCTTCAATATCTGTATTATTTAGCTCAGATTGGTCTGGCTATGTCACCCCTGAGCAACAATTCATTGTTCTTGGACTACCATCGCAACCCTTTTCCCATATTTTTCTTACGGGGTCTTAATGTCTCTCTCTCTACTGATGATCCTCTTCAAATCCACTTAACGAAAGAACCCTTGGTAGAAGAATATAGTATAGCTGCTTCTGTATGGAAATTGAGTTCATGTGATCTATGTGAAATTGCCCGTAATTCAGTTTACCAGTCAGGTTTCTCACATGCTCTGAAGGTATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

775

Amino Acids

87.54

Weight (kDa)

6.36

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	224 - 773	3.5e-287	AMP deaminase
A_deaminase	PF00962	643 - 766	3.7e-09	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1116, 1187
AccB1I	GGYRCC	1 cut(s)	1238
AccB7I	CCANNNNNTGG	1 cut(s)	1946
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	14
AccIII	TCCGGA	1 cut(s)	346
AclI	AACGTT	1 cut(s)	1982
AclWI	GGATC	3 cut(s)	599, 791, 2171
AcoI	YGGCCR	2 cut(s)	24, 57
AcsI	RAATTY	3 cut(s)	1040, 1076, 1931
AcuI	CTGAAG	1 cut(s)	699
AcvI	CACGTG	1 cut(s)	892
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	1106
AfeI	AGCGCT	1 cut(s)	430
AfiI	CCNNNNNNNGG	3 cut(s)	1300, 1411, 1946
AflII	CTTAAG	1 cut(s)	1406
AflIII	ACRYGT	1 cut(s)	891
AhlI	ACTAGT	1 cut(s)	389
AjuI	GAANNNNNNNTTGG	2 cut(s)	2192, 2224
AloI	GAACNNNNNNTCC	2 cut(s)	2236, 2268
Alw21I	GWGCWC	1 cut(s)	1099
Alw26I	GTCTC	4 cut(s)	67, 420, 2034, 2164
AlwI	GGATC	3 cut(s)	599, 791, 2171
AlwNI	CAGNNNCTG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	346
Aor51HI	AGCGCT	1 cut(s)	430
AoxI	GGCC	7 cut(s)	24, 57, 249, 494, 1083, 1429, 1793
ApeKI	GCWGC	9 cut(s)	100, 184, 334, 545, 614, 986, 1606, 1976, 2231
ApoI	RAATTY	3 cut(s)	1040, 1076, 1931
AspLEI	GCGC	2 cut(s)	219, 431
AspS9I	GGNCC	6 cut(s)	494, 564, 1084, 1303, 1540, 1794
AsuHPI	GGTGA	4 cut(s)	593, 681, 956, 2073
AvaII	GGWCC	3 cut(s)	564, 1303, 1540
BaeI	ACNNNNGTAYC	4 cut(s)	666, 699, 1125, 1158
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	1238
BarI	GAAGNNNNNNTAC	2 cut(s)	2218, 2250
BbrPI	CACGTG	1 cut(s)	892
BbsI	GAAGAC	2 cut(s)	92, 122
Bbv12I	GWGCWC	1 cut(s)	1099
BbvI	GCAGC	9 cut(s)	87, 196, 321, 532, 626, 998, 1593, 1963, 2218
BccI	CCATC	9 cut(s)	149, 694, 872, 1020, 1229, 1486, 1725, 1934, 2124
BceAI	ACGGC	5 cut(s)	44, 285, 1416, 1628, 1808
BciVI	GTATCC	1 cut(s)	906
BclI	TGATCA	1 cut(s)	856
BcoDI	GTCTC	4 cut(s)	67, 420, 2034, 2164
BcuI	ACTAGT	1 cut(s)	389
BfaI	CTAG	3 cut(s)	390, 432, 1551
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	1406
BfuI	GTATCC	1 cut(s)	906
BglI	GCCNNNNNGGC	2 cut(s)	32, 65
BlpI	GCTNAGC	2 cut(s)	363, 1443
Bme18I	GGWCC	3 cut(s)	564, 1303, 1540
BmgT120I	GGNCC	6 cut(s)	494, 564, 1084, 1303, 1540, 1794
BmiI	GGNNCC	5 cut(s)	495, 566, 1209, 1240, 1541
BmrI	ACTGGG	2 cut(s)	795, 1293
BmsI	GCATC	3 cut(s)	861, 928, 1180
BmuI	ACTGGG	2 cut(s)	795, 1293
BpiI	GAAGAC	2 cut(s)	92, 122
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 2014, 2046
BpmI	CTGGAG	3 cut(s)	125, 402, 1800
Bpu10I	CCTNAGC	4 cut(s)	489, 639, 1391, 2087
Bpu1102I	GCTNAGC	2 cut(s)	363, 1443
BpuEI	CTTGAG	2 cut(s)	1273, 1346
BsaAI	YACGTR	1 cut(s)	892
BsaBI	GATNNNNATC	1 cut(s)	1716
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	27, 329, 773, 1426, 1610, 2208
BsaWI	WCCGGW	2 cut(s)	81, 346
Bsc4I	CCNNNNNNNGG	3 cut(s)	1300, 1411, 1946
Bse118I	RCCGGY	2 cut(s)	237, 367
Bse1I	ACTGG	5 cut(s)	419, 801, 1288, 1479, 2293
Bse8I	GATNNNNATC	1 cut(s)	1716
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	6 cut(s)	27, 329, 773, 1426, 1610, 2208
BseGI	GGATG	3 cut(s)	466, 1318, 1717
BseJI	GATNNNNATC	1 cut(s)	1716
BseLI	CCNNNNNNNGG	3 cut(s)	1300, 1411, 1946
BseMII	CTCAG	9 cut(s)	110, 377, 630, 834, 1405, 1434, 1488, 2075, 2078
BseNI	ACTGG	5 cut(s)	419, 801, 1288, 1479, 2293
BseRI	GAGGAG	1 cut(s)	158
BseXI	GCAGC	9 cut(s)	87, 196, 321, 532, 626, 998, 1593, 1963, 2218
BseYI	CCCAGC	2 cut(s)	320, 1955
BsgI	GTGCAG	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	14
BshFI	GGCC	7 cut(s)	26, 59, 251, 496, 1085, 1431, 1795
BshNI	GGYRCC	1 cut(s)	1238
BsiHKAI	GWGCWC	1 cut(s)	1099
BsiSI	CCGG	7 cut(s)	82, 238, 260, 279, 317, 347, 368
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	5 cut(s)	188, 219, 550, 1553, 1973
BslI	CCNNNNNNNGG	3 cut(s)	1300, 1411, 1946
BsmAI	GTCTC	4 cut(s)	67, 420, 2034, 2164
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	5 cut(s)	188, 219, 550, 1553, 1973
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	7 cut(s)	26, 59, 251, 496, 1085, 1431, 1795
Bsp1286I	GDGCHC	1 cut(s)	1099
Bsp13I	TCCGGA	1 cut(s)	346
Bsp1407I	TGTACA	2 cut(s)	1575, 1617
Bsp143I	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
Bsp1720I	GCTNAGC	2 cut(s)	363, 1443
Bsp19I	CCATGG	2 cut(s)	27, 773
BspANI	GGCC	7 cut(s)	26, 59, 251, 496, 1085, 1431, 1795
BspCNI	CTCAG	9 cut(s)	109, 376, 631, 835, 1404, 1435, 1489, 2074, 2079
BspEI	TCCGGA	1 cut(s)	346
BspFNI	CGCG	1 cut(s)	14
BspHI	TCATGA	1 cut(s)	189
BspLI	GGNNCC	5 cut(s)	495, 566, 1209, 1240, 1541
BspPI	GGATC	3 cut(s)	599, 791, 2171
BspQI	GCTCTTC	1 cut(s)	912
BspT107I	GGYRCC	1 cut(s)	1238
BspTI	CTTAAG	1 cut(s)	1406
BsrBI	CCGCTC	1 cut(s)	139
BsrFI	RCCGGY	2 cut(s)	237, 367
BsrGI	TGTACA	2 cut(s)	1575, 1617
BsrI	ACTGG	5 cut(s)	419, 801, 1288, 1479, 2293
BssAI	RCCGGY	2 cut(s)	237, 367
BssECI	CCNNGG	6 cut(s)	27, 329, 773, 1426, 1610, 2208
BssMI	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	4 cut(s)	27, 773, 1426, 2208
Bst4CI	ACNGT	4 cut(s)	121, 311, 1580, 1725
Bst6I	CTCTTC	2 cut(s)	912, 2187
BstACI	GRCGYC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	1406
BstAUI	TGTACA	2 cut(s)	1575, 1617
BstBAI	YACGTR	1 cut(s)	892
BstC8I	GCNNGC	2 cut(s)	427, 1156
BstDSI	CCRYGG	3 cut(s)	27, 773, 1610
BstEII	GGTNACC	1 cut(s)	1696
BstENI	CCTNNNNNAGG	1 cut(s)	1409
BstF5I	GGATG	3 cut(s)	466, 1318, 1717
BstFNI	CGCG	1 cut(s)	14
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	2 cut(s)	219, 431
BstKTI	GATC	7 cut(s)	586, 607, 799, 859, 1471, 2179, 2263
BstMAI	GTCTC	4 cut(s)	67, 420, 2034, 2164
BstMBI	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
BstNSI	RCATGY	5 cut(s)	79, 1158, 1733, 1810, 2312
BstPI	GGTNACC	1 cut(s)	1696
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	1 cut(s)	14
BstV1I	GCAGC	9 cut(s)	87, 196, 321, 532, 626, 998, 1593, 1963, 2218
BstV2I	GAAGAC	2 cut(s)	92, 122
BstXI	CCANNNNNNTGG	1 cut(s)	1824
BsuI	GTATCC	1 cut(s)	906
BsuRI	GGCC	7 cut(s)	26, 59, 251, 496, 1085, 1431, 1795
BtgI	CCRYGG	3 cut(s)	27, 773, 1610
BtgZI	GCGATG	3 cut(s)	1001, 1987, 2102
BtsCI	GGATG	3 cut(s)	466, 1318, 1717
BtsIMutI	CAGTG	3 cut(s)	763, 954, 1585
Cac8I	GCNNGC	2 cut(s)	427, 1156
CaiI	CAGNNNCTG	1 cut(s)	103
CciI	TCATGA	1 cut(s)	189
CfoI	GCGC	2 cut(s)	219, 431
Cfr10I	RCCGGY	2 cut(s)	237, 367
Cfr13I	GGNCC	6 cut(s)	494, 564, 1084, 1303, 1540, 1794
CseI	GACGC	1 cut(s)	36
CspCI	CAANNNNNGTGG	4 cut(s)	1357, 1392, 1517, 1552
DpnI	GATC	7 cut(s)	585, 606, 798, 858, 1470, 2178, 2262
DpnII	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
DraIII	CACNNNGTG	1 cut(s)	1106
EaeI	YGGCCR	2 cut(s)	24, 57
Eam1104I	CTCTTC	2 cut(s)	912, 2187
EarI	CTCTTC	2 cut(s)	912, 2187
Eco130I	CCWWGG	4 cut(s)	27, 773, 1426, 2208
Eco47I	GGWCC	3 cut(s)	564, 1303, 1540
Eco47III	AGCGCT	1 cut(s)	430
Eco57I	CTGAAG	1 cut(s)	699
Eco72I	CACGTG	1 cut(s)	892
Eco91I	GGTNACC	1 cut(s)	1696
EcoNI	CCTNNNNNAGG	1 cut(s)	1409
EcoO109I	RGGNCCY	1 cut(s)	564
EcoO65I	GGTNACC	1 cut(s)	1696
EcoT14I	CCWWGG	4 cut(s)	27, 773, 1426, 2208
EcoT22I	ATGCAT	1 cut(s)	1160
ErhI	CCWWGG	4 cut(s)	27, 773, 1426, 2208
Esp3I	CGTCTC	1 cut(s)	67
FalI	AAGNNNNNCTT	4 cut(s)	714, 746, 906, 938
FaqI	GGGAC	5 cut(s)	188, 219, 550, 1553, 1973
FauI	CCCGC	4 cut(s)	132, 164, 221, 275
FbaI	TGATCA	1 cut(s)	856
FokI	GGATG	3 cut(s)	473, 1325, 1704
FspBI	CTAG	3 cut(s)	390, 432, 1551
GlaI	GCGC	2 cut(s)	218, 430
GsaI	CCCAGC	2 cut(s)	324, 1959
GsuI	CTGGAG	3 cut(s)	125, 402, 1800
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	7 cut(s)	26, 59, 251, 496, 1085, 1431, 1795
HapII	CCGG	7 cut(s)	82, 238, 260, 279, 317, 347, 368
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	219, 431
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	2 cut(s)	217, 429
HinP1I	GCGC	2 cut(s)	217, 429
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	1 cut(s)	1898
HinfI	GANTC	8 cut(s)	5, 176, 908, 1024, 1270, 1712, 1907, 2013
HpaII	CCGG	7 cut(s)	82, 238, 260, 279, 317, 347, 368
HphI	GGTGA	4 cut(s)	593, 681, 956, 2073
Hpy166II	GTNNAC	7 cut(s)	289, 307, 1303, 1564, 1864, 1940, 2290
Hpy188III	TCNNGA	9 cut(s)	190, 347, 722, 1106, 1232, 1274, 1667, 1709, 1904
Hpy8I	GTNNAC	7 cut(s)	289, 307, 1303, 1564, 1864, 1940, 2290
Hpy99I	CGWCG	2 cut(s)	44, 52
HpyAV	CCTTC	6 cut(s)	344, 446, 971, 1198, 1906, 2311
HpyCH4III	ACNGT	4 cut(s)	121, 311, 1580, 1725
HpyCH4IV	ACGT	3 cut(s)	264, 891, 1982
HpySE526I	ACGT	3 cut(s)	264, 891, 1982
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	2 cut(s)	217, 429
Kpn2I	TCCGGA	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	4 cut(s)	136, 775, 1102, 1207
Lsp1109I	GCAGC	9 cut(s)	87, 196, 321, 532, 626, 998, 1593, 1963, 2218
LweI	GCATC	3 cut(s)	861, 928, 1180
MaeI	CTAG	3 cut(s)	390, 432, 1551
MaeII	ACGT	3 cut(s)	264, 891, 1982
MaeIII	GTNAC	6 cut(s)	265, 514, 1106, 1645, 1696, 2079
MalI	GATC	7 cut(s)	585, 606, 798, 858, 1470, 2178, 2262
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
MboII	GAAGA	9 cut(s)	97, 127, 205, 479, 710, 929, 1040, 2174, 2228
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	1 cut(s)	1099
MlsI	TGGCCA	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	3 cut(s)	14, 170, 1279
MmeI	TCCRAC	1 cut(s)	1535
Mox20I	TGGCCA	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	1160
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	6 cut(s)	1055, 1062, 1407, 1892, 2154, 2195
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	4 cut(s)	100, 617, 1606, 1687
MspCI	CTTAAG	1 cut(s)	1406
MspI	CCGG	7 cut(s)	82, 238, 260, 279, 317, 347, 368
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	731
MvnI	CGCG	1 cut(s)	14
NcoI	CCATGG	2 cut(s)	27, 773
NdeII	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
NlaIV	GGNNCC	5 cut(s)	495, 566, 1209, 1240, 1541
NmeAIII	GCCGAG	4 cut(s)	44, 227, 354, 1130
NmuCI	GTSAC	3 cut(s)	1106, 1645, 2079
NsiI	ATGCAT	1 cut(s)	1160
NspI	RCATGY	5 cut(s)	79, 1158, 1733, 1810, 2312
PaeI	GCATGC	1 cut(s)	1158
PagI	TCATGA	1 cut(s)	189
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	731
PfeI	GAWTC	5 cut(s)	908, 1024, 1712, 1907, 2013
Pfl23II	CGTACG	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	1946
PleI	GAGTC	3 cut(s)	13, 170, 1278
PmaCI	CACGTG	1 cut(s)	892
PmlI	CACGTG	1 cut(s)	892
PpsI	GAGTC	3 cut(s)	13, 170, 1278
Ppu21I	YACGTR	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	564
PsiI	TTATAA	2 cut(s)	1116, 1187
Psp1406I	AACGTT	1 cut(s)	1982
Psp5II	RGGWCCY	1 cut(s)	564
PspCI	CACGTG	1 cut(s)	892
PspEI	GGTNACC	1 cut(s)	1696
PspFI	CCCAGC	2 cut(s)	320, 1955
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	5 cut(s)	495, 566, 1209, 1240, 1541
PspPI	GGNCC	6 cut(s)	494, 564, 1084, 1303, 1540, 1794
PspPPI	RGGWCCY	1 cut(s)	564
PstNI	CAGNNNCTG	1 cut(s)	103
PvuII	CAGCTG	3 cut(s)	100, 617, 1606
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	6 cut(s)	1055, 1062, 1407, 1892, 2154, 2195
Sau3AI	GATC	7 cut(s)	583, 604, 796, 856, 1468, 2176, 2260
Sau96I	GGNCC	6 cut(s)	494, 564, 1084, 1303, 1540, 1794
SchI	GAGTC	3 cut(s)	14, 170, 1279
SduI	GDGCHC	1 cut(s)	1099
SfaNI	GCATC	3 cut(s)	861, 928, 1180
SfcI	CTRYAG	1 cut(s)	540
SinI	GGWCC	3 cut(s)	564, 1303, 1540
SmlI	CTYRAG	3 cut(s)	1252, 1361, 1406
SmoI	CTYRAG	3 cut(s)	1252, 1361, 1406
SpeI	ACTAGT	1 cut(s)	389
SphI	GCATGC	1 cut(s)	1158
SspI	AATATT	1 cut(s)	1227
SspMI	CTAG	3 cut(s)	390, 432, 1551
StyI	CCWWGG	4 cut(s)	27, 773, 1426, 2208
TaaI	ACNGT	4 cut(s)	121, 311, 1580, 1725
TaiI	ACGT	3 cut(s)	267, 894, 1985
TaqI	TCGA	3 cut(s)	1231, 1767, 1910
TatI	WGTACW	5 cut(s)	1365, 1500, 1575, 1617, 1863
TauI	GCSGC	7 cut(s)	35, 165, 168, 171, 184, 217, 228
TfiI	GAWTC	5 cut(s)	908, 1024, 1712, 1907, 2013
Tru1I	TTAA	6 cut(s)	1055, 1062, 1407, 1892, 2154, 2195
Tru9I	TTAA	6 cut(s)	1055, 1062, 1407, 1892, 2154, 2195
TscAI	CASTG	3 cut(s)	763, 961, 1585
TseFI	GTSAC	3 cut(s)	1106, 1645, 2079
TseI	GCWGC	9 cut(s)	100, 184, 334, 545, 614, 986, 1606, 1976, 2231
Tsp45I	GTSAC	3 cut(s)	1106, 1645, 2079
TspGWI	ACGGA	2 cut(s)	1925, 2025
TspRI	CASTG	3 cut(s)	763, 961, 1585
Van91I	CCANNNNNTGG	1 cut(s)	1946
Vha464I	CTTAAG	1 cut(s)	1406
VpaK11BI	GGWCC	3 cut(s)	564, 1303, 1540
XagI	CCTNNNNNAGG	1 cut(s)	1409
XapI	RAATTY	3 cut(s)	1040, 1076, 1931
XceI	RCATGY	5 cut(s)	79, 1158, 1733, 1810, 2312
XcmI	CCANNNNNNNNNTGG	1 cut(s)	575
XspI	CTAG	3 cut(s)	390, 432, 1551
Zsp2I	ATGCAT	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.