Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0001592

Physical Location & Seq

Genomic Coordinates Forward (+)

10347475 .. 10354730

Gene Structure 7256 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGAGTCGTACGCGGTACATTTGGCCATGGCGGCTCTCGTCGGGGCGTCGCTGGTGGCCGTCTCAGCTTACTACATGCACCGGAAGACCCTAACTCAGCTGCTGGAGTTTGCGAAGACGGTGGAGAGGGAGAGGGAGCGGGAGGACAACTCCGATGGAGGCGGCGGCGGCGGCGGGGACTCGCCGCAGCACATGAAGAAGCGTAAGGGACACGGGCGGCGCAAAGGCGGCGGGTATTACCGGCGTGGCTCGGCCTCTTTGCCGGACGTTACGGCGATTTCCGGCGGGGTTGACGGGAATGGAATGGTGGACGGTATTCCGGCTGGGTTGCCGAGGCTGCACACGCTTCCGGAAGGAAAATCGGCTCAGCCGGTGGGTTCAGCTAAGAGAACTGGTATCAGACCTGTTTCTCCCAAGTCTCCAGTTGCAAGCGCTAGTGCCTTTGAGAGCGTTGAAGGTTCGGATGATGAAGATAATTTGACTGACAATGCTAAGGGGCCAGATTTACCAAACCATGTTACTGCCAATGGAGAGCAAATTGCTATAGCTGCTTCAAGTATGATTAGGTCCCATTCTGTATCTGGTGATCTGCATGGTGTCCAGCCTGATCCAATTGCAGCTGACATTCTAAGGAAAGAGCCTGAGCAAGAAACTTTTGCACGACTAAAAATTACTCCTACTGAAGTACCATCACCTGATGAAATAGAGGTTTATGTGGTTCTTCAAGAATGCCTTGAAATGCGAAAGAGATATGTATTCAGTGAGGCAGTTGCTCCATGGGAGAGGGAAGTTATATCTGATCCCAGTACCCCAAAGCCTAACCCAGAACCATTTTTCTACGCTTCTGAGGGAAAGTCTGATCATCATTTTGAGATGCAAGATGGAGTAATTCACGTGTATCCACATAAAGATTCAAAAGAAGAGCTTTATCCTGTTGCTGATGCAACTACCTTTTTCACTGACCTTCACCACATACTTAGAGTTATAGCAGCAGGGAATATCAGAACTTTATGCCATCATCGCTTGAATCTTTTGGAACAAAAATTCAATCTTCACTTAATGCTTAATGCGGATAAGGAATTTCTGGCCCAGAAAAGTGCTCCACATCGTGACTTTTATAATGTTAGGAAAGTTGATACCCATGTTCATCACTCGGCATGCATGAACCAGAAGCATCTTTTGAGGTTTATAAAGTCAAAGTTGAGGAAGGAGCCTGATGAGGTTGTAATATTTCGAGATGGCACCTATTTGACCTTGAGAGAAGTTTTTGAGAGTCTGGATTTGACTGGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATCTCAAGTACAACCCCTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTCTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGTACAGAATATCAATATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTATGGTTGATACAGCTGCCACGGCTGTACAATATATACAAGGAAATGGGGATAGTGACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCATCCACAGTTGCATGTTTTTCTGAAACAGGTTGTTGGGTTAGATTTGGTCGATGATGAAAGCAAACCTGAAAGACGGCCCACAAAACACATGCCAACTCCAGCACAATGGACAAATGTTTTCAATCCTGCATTTTCGTACTATGTGTACTATTGTTATGCTAATCTCTACACATTAAACAAGCTTCGTGAATCGAAGGGCATGACAACCATCAAATTCCGTCCACATTCTGGGGAGGCTGGGGACATTGACCACCTTGCTGCAACGTTTCTTACCGCGACTAACATTGCACACGGAATCAATTTGAGGAAGTCTCCTGTGCTTCAATATCTGTATTATTTAGCTCAGATTGGTCTGGCTATGTCACCCCTGAGCAACAATTCATTGTTCTTGGACTACCATCGCAACCCTTTTCCCATATTTTTCTTACGGGGTCTTAATGTCTCTCTCTCTACTGATGATCCTCTTCAAATCCACTTAACGAAAGAACCCTTGGTAGAAGAATATAGTATAGCTGCTTCTGTAAGCTCTCTCTCTCCCTCTCCCTCTTCCTCTCTTTGCAGAGCTGAAGGAATGTACGTGACAGCCCAAATTTCTTCCTTTACAGTCACACTGGATTGGGAGAGAGTATTACAAGAGAGGACCAGATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

791

Amino Acids

89.31

Weight (kDa)

6.36

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	225 - 755	2.1e-270	AMP deaminase
A_deaminase	PF00962	644 - 750	5.1e-06	Adenosine deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001592)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38280 AT2G38280
fragaria_vesca	FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_4g35780 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200 FvH4_6g11200
malus_domestica	MD00G1061700.v1.1 MD12G1171800.v1.1 MD13G1080600.v1.1
prunus_persica	Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.1G265900_v2.0.a1 Prupe.6G280000_v2.0.a1
pyrus_communis	pycom04g14260 pycom13g06970
rosa_chinensis	RchiOBHm_Chr3g0462681 RchiOBHm_Chr4g0445291 RchiOBHm_Chr6g0271931
rosa_laevigata	RLG00000005751 RLG00000024843
rosa_multiflora	Rmu_sc0000050.1_g000023 Rmu_sc0011057.1_g000004
rosa_roxburghii	Rroxscaffold_5G00385800 Rroxscaffold_6G00417300
rosa_rugosa	Rorug03G0058500 Rorug04G0360200 Rorug04G0360300
rosa_samantha	Rh3AG116500 Rh3BG120100 Rh3CG123300 Rh3DG122100 Rh4AG421600 Rh4BG433500 Rh4CG448200 Rh4DG429500
rosa_wichuraiana	Rw3G009860 Rw4G036160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1119, 1190
AccB1I	GGYRCC	1 cut(s)	1241
AccB7I	CCANNNNNTGG	1 cut(s)	1949
AccBSI	CCGCTC	1 cut(s)	139
AccII	CGCG	2 cut(s)	14, 1997
AccIII	TCCGGA	1 cut(s)	349
AclI	AACGTT	1 cut(s)	1985
AclWI	GGATC	3 cut(s)	602, 794, 2174
AcoI	YGGCCR	2 cut(s)	24, 57
AcsI	RAATTY	4 cut(s)	1043, 1079, 1934, 2310
AcuI	CTGAAG	2 cut(s)	702, 2307
AcvI	CACGTG	1 cut(s)	895
AcyI	GRCGYC	1 cut(s)	47
AdeI	CACNNNGTG	1 cut(s)	1109
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	3 cut(s)	1303, 1414, 1949
AflII	CTTAAG	1 cut(s)	1409
AflIII	ACRYGT	1 cut(s)	894
AjuI	GAANNNNNNNTTGG	2 cut(s)	2195, 2227
Alw21I	GWGCWC	1 cut(s)	1102
Alw26I	GTCTC	4 cut(s)	67, 423, 2037, 2167
AlwI	GGATC	3 cut(s)	602, 794, 2174
AlwNI	CAGNNNCTG	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	349
Aor51HI	AGCGCT	1 cut(s)	433
AoxI	GGCC	7 cut(s)	24, 57, 252, 497, 1086, 1432, 1796
ApeKI	GCWGC	9 cut(s)	100, 187, 337, 548, 617, 989, 1609, 1979, 2234
ApoI	RAATTY	4 cut(s)	1043, 1079, 1934, 2310
AspLEI	GCGC	2 cut(s)	222, 434
AspS9I	GGNCC	7 cut(s)	497, 567, 1087, 1306, 1543, 1797, 2361
AsuHPI	GGTGA	4 cut(s)	596, 684, 959, 2076
AvaII	GGWCC	4 cut(s)	567, 1306, 1543, 2361
BaeI	ACNNNNGTAYC	4 cut(s)	669, 702, 1128, 1161
BalI	TGGCCA	1 cut(s)	26
BanI	GGYRCC	1 cut(s)	1241
BarI	GAAGNNNNNNTAC	2 cut(s)	2221, 2253
BbrPI	CACGTG	1 cut(s)	895
BbsI	GAAGAC	2 cut(s)	92, 122
Bbv12I	GWGCWC	1 cut(s)	1102
BbvI	GCAGC	9 cut(s)	87, 199, 324, 535, 629, 1001, 1596, 1966, 2221
BceAI	ACGGC	5 cut(s)	44, 288, 1419, 1631, 1811
BciVI	GTATCC	1 cut(s)	909
BclI	TGATCA	1 cut(s)	859
BcoDI	GTCTC	4 cut(s)	67, 423, 2037, 2167
BfaI	CTAG	2 cut(s)	435, 1554
BfmI	CTRYAG	1 cut(s)	543
BfoI	RGCGCY	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	1409
BfuI	GTATCC	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	32
BlpI	GCTNAGC	2 cut(s)	366, 1446
Bme18I	GGWCC	4 cut(s)	567, 1306, 1543, 2361
BmgT120I	GGNCC	7 cut(s)	497, 567, 1087, 1306, 1543, 1797, 2361
BmiI	GGNNCC	5 cut(s)	498, 569, 1212, 1243, 1544
BmrI	ACTGGG	2 cut(s)	798, 1296
BmsI	GCATC	3 cut(s)	864, 931, 1183
BmuI	ACTGGG	2 cut(s)	798, 1296
BpiI	GAAGAC	2 cut(s)	92, 122
BplI	GAGNNNNNCTC	4 cut(s)	134, 166, 2017, 2049
BpmI	CTGGAG	3 cut(s)	125, 405, 1803
Bpu10I	CCTNAGC	4 cut(s)	492, 642, 1394, 2090
Bpu1102I	GCTNAGC	2 cut(s)	366, 1446
BpuEI	CTTGAG	2 cut(s)	1276, 1349
BsaAI	YACGTR	2 cut(s)	895, 2299
BsaBI	GATNNNNATC	1 cut(s)	1719
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	6 cut(s)	27, 332, 776, 1429, 1613, 2211
BsaWI	WCCGGW	2 cut(s)	81, 349
Bsc4I	CCNNNNNNNGG	3 cut(s)	1303, 1414, 1949
Bse118I	RCCGGY	2 cut(s)	240, 370
Bse1I	ACTGG	6 cut(s)	397, 422, 804, 1291, 1482, 2337
Bse3DI	GCAATG	1 cut(s)	2004
Bse8I	GATNNNNATC	1 cut(s)	1719
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	6 cut(s)	27, 332, 776, 1429, 1613, 2211
BseGI	GGATG	3 cut(s)	469, 1321, 1720
BseJI	GATNNNNATC	1 cut(s)	1719
BseLI	CCNNNNNNNGG	3 cut(s)	1303, 1414, 1949
BseMI	GCAATG	1 cut(s)	2004
BseNI	ACTGG	6 cut(s)	397, 422, 804, 1291, 1482, 2337
BseXI	GCAGC	9 cut(s)	87, 199, 324, 535, 629, 1001, 1596, 1966, 2221
BseYI	CCCAGC	2 cut(s)	323, 1958
BsgI	GTGCAG	1 cut(s)	323
Bsh1236I	CGCG	2 cut(s)	14, 1997
BshFI	GGCC	7 cut(s)	26, 59, 254, 499, 1088, 1434, 1798
BshNI	GGYRCC	1 cut(s)	1241
BsiHKAI	GWGCWC	1 cut(s)	1102
BsiSI	CCGG	7 cut(s)	82, 241, 263, 282, 320, 350, 371
BsiWI	CGTACG	1 cut(s)	9
BslFI	GGGAC	5 cut(s)	191, 222, 553, 1556, 1976
BslI	CCNNNNNNNGG	3 cut(s)	1303, 1414, 1949
BsmAI	GTCTC	4 cut(s)	67, 423, 2037, 2167
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	5 cut(s)	191, 222, 553, 1556, 1976
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	7 cut(s)	26, 59, 254, 499, 1088, 1434, 1798
Bsp1286I	GDGCHC	1 cut(s)	1102
Bsp13I	TCCGGA	1 cut(s)	349
Bsp1407I	TGTACA	2 cut(s)	1578, 1620
Bsp143I	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
Bsp1720I	GCTNAGC	2 cut(s)	366, 1446
Bsp19I	CCATGG	2 cut(s)	27, 776
BspANI	GGCC	7 cut(s)	26, 59, 254, 499, 1088, 1434, 1798
BspEI	TCCGGA	1 cut(s)	349
BspFNI	CGCG	2 cut(s)	14, 1997
BspLI	GGNNCC	5 cut(s)	498, 569, 1212, 1243, 1544
BspPI	GGATC	3 cut(s)	602, 794, 2174
BspQI	GCTCTTC	1 cut(s)	915
BspT107I	GGYRCC	1 cut(s)	1241
BspTI	CTTAAG	1 cut(s)	1409
BsrBI	CCGCTC	1 cut(s)	139
BsrDI	GCAATG	1 cut(s)	2004
BsrFI	RCCGGY	2 cut(s)	240, 370
BsrGI	TGTACA	2 cut(s)	1578, 1620
BsrI	ACTGG	6 cut(s)	397, 422, 804, 1291, 1482, 2337
BssAI	RCCGGY	2 cut(s)	240, 370
BssECI	CCNNGG	6 cut(s)	27, 332, 776, 1429, 1613, 2211
BssMI	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	4 cut(s)	27, 776, 1429, 2211
Bst4CI	ACNGT	5 cut(s)	121, 314, 1583, 1728, 2326
Bst6I	CTCTTC	3 cut(s)	915, 2190, 2272
BstACI	GRCGYC	1 cut(s)	47
BstAFI	CTTAAG	1 cut(s)	1409
BstAUI	TGTACA	2 cut(s)	1578, 1620
BstBAI	YACGTR	2 cut(s)	895, 2299
BstC8I	GCNNGC	2 cut(s)	430, 1159
BstDSI	CCRYGG	3 cut(s)	27, 776, 1613
BstEII	GGTNACC	1 cut(s)	1699
BstENI	CCTNNNNNAGG	1 cut(s)	1412
BstF5I	GGATG	3 cut(s)	469, 1321, 1720
BstFNI	CGCG	2 cut(s)	14, 1997
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	2 cut(s)	222, 434
BstKTI	GATC	6 cut(s)	589, 610, 802, 862, 1474, 2182
BstMAI	GTCTC	4 cut(s)	67, 423, 2037, 2167
BstMBI	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
BstNSI	RCATGY	4 cut(s)	79, 1161, 1736, 1813
BstPI	GGTNACC	1 cut(s)	1699
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	2 cut(s)	14, 1997
BstV1I	GCAGC	9 cut(s)	87, 199, 324, 535, 629, 1001, 1596, 1966, 2221
BstV2I	GAAGAC	2 cut(s)	92, 122
BstXI	CCANNNNNNTGG	1 cut(s)	1827
BsuI	GTATCC	1 cut(s)	909
BsuRI	GGCC	7 cut(s)	26, 59, 254, 499, 1088, 1434, 1798
BtgI	CCRYGG	3 cut(s)	27, 776, 1613
BtgZI	GCGATG	2 cut(s)	1004, 2105
BtsCI	GGATG	3 cut(s)	469, 1321, 1720
BtsIMutI	CAGTG	4 cut(s)	766, 957, 1588, 2330
Cac8I	GCNNGC	2 cut(s)	430, 1159
CaiI	CAGNNNCTG	1 cut(s)	103
CfoI	GCGC	2 cut(s)	222, 434
Cfr10I	RCCGGY	2 cut(s)	240, 370
Cfr13I	GGNCC	7 cut(s)	497, 567, 1087, 1306, 1543, 1797, 2361
CseI	GACGC	1 cut(s)	36
CspCI	CAANNNNNGTGG	4 cut(s)	1360, 1395, 1520, 1555
DpnI	GATC	6 cut(s)	588, 609, 801, 861, 1473, 2181
DpnII	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
DraIII	CACNNNGTG	1 cut(s)	1109
EaeI	YGGCCR	2 cut(s)	24, 57
Eam1104I	CTCTTC	3 cut(s)	915, 2190, 2272
EarI	CTCTTC	3 cut(s)	915, 2190, 2272
Eco130I	CCWWGG	4 cut(s)	27, 776, 1429, 2211
Eco47I	GGWCC	4 cut(s)	567, 1306, 1543, 2361
Eco47III	AGCGCT	1 cut(s)	433
Eco57I	CTGAAG	2 cut(s)	702, 2307
Eco72I	CACGTG	1 cut(s)	895
Eco91I	GGTNACC	1 cut(s)	1699
EcoNI	CCTNNNNNAGG	1 cut(s)	1412
EcoO109I	RGGNCCY	1 cut(s)	567
EcoO65I	GGTNACC	1 cut(s)	1699
EcoT14I	CCWWGG	4 cut(s)	27, 776, 1429, 2211
EcoT22I	ATGCAT	1 cut(s)	1163
ErhI	CCWWGG	4 cut(s)	27, 776, 1429, 2211
Esp3I	CGTCTC	1 cut(s)	67
FalI	AAGNNNNNCTT	4 cut(s)	717, 749, 909, 941
FaqI	GGGAC	5 cut(s)	191, 222, 553, 1556, 1976
FauI	CCCGC	4 cut(s)	132, 167, 224, 278
FbaI	TGATCA	1 cut(s)	859
FokI	GGATG	3 cut(s)	476, 1328, 1707
FspBI	CTAG	2 cut(s)	435, 1554
GlaI	GCGC	2 cut(s)	221, 433
GsaI	CCCAGC	2 cut(s)	327, 1962
GsuI	CTGGAG	3 cut(s)	125, 405, 1803
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	7 cut(s)	26, 59, 254, 499, 1088, 1434, 1798
HapII	CCGG	7 cut(s)	82, 241, 263, 282, 320, 350, 371
HgaI	GACGC	1 cut(s)	36
HhaI	GCGC	2 cut(s)	222, 434
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	2 cut(s)	220, 432
HinP1I	GCGC	2 cut(s)	220, 432
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	1901
HinfI	GANTC	8 cut(s)	5, 179, 911, 1027, 1273, 1715, 1910, 2016
HpaII	CCGG	7 cut(s)	82, 241, 263, 282, 320, 350, 371
HphI	GGTGA	4 cut(s)	596, 684, 959, 2076
Hpy166II	GTNNAC	6 cut(s)	292, 310, 1306, 1567, 1867, 1943
Hpy188III	TCNNGA	8 cut(s)	350, 725, 1109, 1235, 1277, 1670, 1712, 1907
Hpy8I	GTNNAC	6 cut(s)	292, 310, 1306, 1567, 1867, 1943
Hpy99I	CGWCG	2 cut(s)	44, 52
HpyAV	CCTTC	6 cut(s)	347, 449, 974, 1201, 1909, 2282
HpyCH4III	ACNGT	5 cut(s)	121, 314, 1583, 1728, 2326
HpyCH4IV	ACGT	4 cut(s)	267, 894, 1985, 2298
HpySE526I	ACGT	4 cut(s)	267, 894, 1985, 2298
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	2 cut(s)	220, 432
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	859
Kzo9I	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
LguI	GCTCTTC	1 cut(s)	915
LmnI	GCTCC	4 cut(s)	136, 778, 1105, 1210
Lsp1109I	GCAGC	9 cut(s)	87, 199, 324, 535, 629, 1001, 1596, 1966, 2221
LweI	GCATC	3 cut(s)	864, 931, 1183
MaeI	CTAG	2 cut(s)	435, 1554
MaeII	ACGT	4 cut(s)	267, 894, 1985, 2298
MaeIII	GTNAC	8 cut(s)	268, 517, 1109, 1648, 1699, 2082, 2299, 2326
MalI	GATC	6 cut(s)	588, 609, 801, 861, 1473, 2181
MbiI	CCGCTC	1 cut(s)	139
MboI	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	1102
MlsI	TGGCCA	1 cut(s)	26
MluNI	TGGCCA	1 cut(s)	26
MlyI	GAGTC	3 cut(s)	14, 173, 1282
MmeI	TCCRAC	1 cut(s)	1538
Mox20I	TGGCCA	1 cut(s)	26
Mph1103I	ATGCAT	1 cut(s)	1163
MroI	TCCGGA	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	26
MseI	TTAA	6 cut(s)	1058, 1065, 1410, 1895, 2157, 2198
Msp20I	TGGCCA	1 cut(s)	26
MspA1I	CMGCKG	4 cut(s)	100, 620, 1609, 1690
MspCI	CTTAAG	1 cut(s)	1409
MspI	CCGG	7 cut(s)	82, 241, 263, 282, 320, 350, 371
MunI	CAATTG	1 cut(s)	612
Mva1269I	GAATGC	1 cut(s)	734
MvnI	CGCG	2 cut(s)	14, 1997
NcoI	CCATGG	2 cut(s)	27, 776
NdeII	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
NlaIV	GGNNCC	5 cut(s)	498, 569, 1212, 1243, 1544
NmeAIII	GCCGAG	3 cut(s)	230, 357, 1133
NmuCI	GTSAC	5 cut(s)	1109, 1648, 2082, 2299, 2326
NsiI	ATGCAT	1 cut(s)	1163
NspI	RCATGY	4 cut(s)	79, 1161, 1736, 1813
PaeI	GCATGC	1 cut(s)	1161
PciSI	GCTCTTC	1 cut(s)	915
PctI	GAATGC	1 cut(s)	734
PfeI	GAWTC	5 cut(s)	911, 1027, 1715, 1910, 2016
Pfl23II	CGTACG	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	1949
PleI	GAGTC	3 cut(s)	13, 173, 1281
PmaCI	CACGTG	1 cut(s)	895
PmlI	CACGTG	1 cut(s)	895
PpsI	GAGTC	3 cut(s)	13, 173, 1281
Ppu21I	YACGTR	2 cut(s)	895, 2299
PpuMI	RGGWCCY	1 cut(s)	567
PsiI	TTATAA	2 cut(s)	1119, 1190
Psp1406I	AACGTT	1 cut(s)	1985
Psp5II	RGGWCCY	1 cut(s)	567
PspCI	CACGTG	1 cut(s)	895
PspEI	GGTNACC	1 cut(s)	1699
PspFI	CCCAGC	2 cut(s)	323, 1958
PspLI	CGTACG	1 cut(s)	9
PspN4I	GGNNCC	5 cut(s)	498, 569, 1212, 1243, 1544
PspPI	GGNCC	7 cut(s)	497, 567, 1087, 1306, 1543, 1797, 2361
PspPPI	RGGWCCY	1 cut(s)	567
PstNI	CAGNNNCTG	1 cut(s)	103
PvuII	CAGCTG	3 cut(s)	100, 620, 1609
SapI	GCTCTTC	1 cut(s)	915
SaqAI	TTAA	6 cut(s)	1058, 1065, 1410, 1895, 2157, 2198
Sau3AI	GATC	6 cut(s)	586, 607, 799, 859, 1471, 2179
Sau96I	GGNCC	7 cut(s)	497, 567, 1087, 1306, 1543, 1797, 2361
SchI	GAGTC	3 cut(s)	14, 173, 1282
SduI	GDGCHC	1 cut(s)	1102
SfaNI	GCATC	3 cut(s)	864, 931, 1183
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	4 cut(s)	567, 1306, 1543, 2361
SmlI	CTYRAG	3 cut(s)	1255, 1364, 1409
SmoI	CTYRAG	3 cut(s)	1255, 1364, 1409
SphI	GCATGC	1 cut(s)	1161
SspI	AATATT	1 cut(s)	1230
SspMI	CTAG	2 cut(s)	435, 1554
StyI	CCWWGG	4 cut(s)	27, 776, 1429, 2211
TaaI	ACNGT	5 cut(s)	121, 314, 1583, 1728, 2326
TaiI	ACGT	4 cut(s)	270, 897, 1988, 2301
TaqI	TCGA	3 cut(s)	1234, 1770, 1913
TatI	WGTACW	5 cut(s)	1368, 1503, 1578, 1620, 1866
TauI	GCSGC	8 cut(s)	35, 165, 168, 171, 174, 187, 220, 231
TfiI	GAWTC	5 cut(s)	911, 1027, 1715, 1910, 2016
Tru1I	TTAA	6 cut(s)	1058, 1065, 1410, 1895, 2157, 2198
Tru9I	TTAA	6 cut(s)	1058, 1065, 1410, 1895, 2157, 2198
TscAI	CASTG	4 cut(s)	766, 964, 1588, 2337
TseFI	GTSAC	5 cut(s)	1109, 1648, 2082, 2299, 2326
TseI	GCWGC	9 cut(s)	100, 187, 337, 548, 617, 989, 1609, 1979, 2234
Tsp45I	GTSAC	5 cut(s)	1109, 1648, 2082, 2299, 2326
TspGWI	ACGGA	2 cut(s)	1928, 2028
TspRI	CASTG	4 cut(s)	766, 964, 1588, 2337
Van91I	CCANNNNNTGG	1 cut(s)	1949
Vha464I	CTTAAG	1 cut(s)	1409
VpaK11BI	GGWCC	4 cut(s)	567, 1306, 1543, 2361
XagI	CCTNNNNNAGG	1 cut(s)	1412
XapI	RAATTY	4 cut(s)	1043, 1079, 1934, 2310
XceI	RCATGY	4 cut(s)	79, 1161, 1736, 1813
XcmI	CCANNNNNNNNNTGG	1 cut(s)	578
XspI	CTAG	2 cut(s)	435, 1554
Zsp2I	ATGCAT	1 cut(s)	1163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.