Rorug04G0360200

AMP deaminase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001592
Physical Location & Seq
Forward (+)
53293582 .. 53295229
1648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0360200.1

Sequence Viewer

Length: 666 bp
ATGTTGAGGTTGCAGGCATTTTCAATTCCCGACTACAATCATGTGACCTTTCCCTCCTCACACGTCATTCCTACTTCACTCCATCTCCACCGTCAGTGTGTATCTTTTCCCACCACACTGGCGCGTTTCCGTTCACTCCCTACCGTCAGGATATGCAGCACTTCCCTTGCATGCGATTTCGGAGGTGGCATAGGAATGAGTGGTTTTTATGATGTTGAGCTTAAAGTCCGCGACTATGAGCTTGATCAGTATGGCGTCGTTAACAATGCTGTCTATGCAAGTTATTGCCAGCACGGTCTTCATGAACTTCTTGAAGGGGTTGGCATGAGTGCTGATGCAGTTGCCCGAACCGGTGAAGCATTCGCTTTATCAGAATTGTCTCTGAAATTCATTGCACCTCTAAAGAGTGGAGACAAGTTTGTCATAAAGGTCGGGATGACCCACTCCTCAGCCGCTCGCGTGTACTTTGATCAGTTCATTTTCAAGCTGCCAAATCTAGAGCCTATCTTGGAAGCAAAGGCCACAGCAGTGTGGCTTGATAAAGGCTATCGCCCTGTCCGTATTTCATCGGAGGTGACATCCAAATTTGTCCAGTTTCGTCGCCATAAGGAGTCTAACGGTGTCCTGCACAACGGAGTTGGTCCCAGGGAAAGTCTTCGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130
Pfam Domains
Protein Families
A_deaminase

Protein Analysis

221

Amino Acids

24.63

Weight (kDa)

8.87

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
4HBT_2 PF13279 76 - 195 6.2e-14 Thioesterase-like superfamily
4HBT PF03061 84 - 165 4.7e-10 Thioesterase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 419
AccBSI CCGCTC 1 cut(s) 455
AccII CGCG 3 cut(s) 124, 231, 459
AciI CCGC 2 cut(s) 229, 453
AcsI RAATTY 2 cut(s) 386, 584
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 61
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 3 cut(s) 24, 314, 484
AjiI CACGTC 1 cut(s) 64
AjnI CCWGG 1 cut(s) 644
AleI CACNNNNGTG 1 cut(s) 527
AluBI AGCT 3 cut(s) 220, 241, 487
AluI AGCT 3 cut(s) 220, 241, 487
Alw26I GTCTC 2 cut(s) 384, 405
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 156, 487
ApoI RAATTY 2 cut(s) 386, 584
AsiGI ACCGGT 1 cut(s) 350
Asp700I GAANNNNTTC 1 cut(s) 654
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 641
AsuHPI GGTGA 2 cut(s) 365, 586
AvaII GGWCC 1 cut(s) 641
BbsI GAAGAC 2 cut(s) 290, 647
BbvCI CCTCAGC 1 cut(s) 448
BbvI GCAGC 2 cut(s) 168, 474
BccI CCATC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 646
BclI TGATCA 2 cut(s) 244, 469
BcoDI GTCTC 2 cut(s) 384, 405
BfaI CTAG 1 cut(s) 497
BisI GCNGC 3 cut(s) 157, 453, 488
BlsI GCNGC 3 cut(s) 158, 454, 489
Bme1390I CCNGG 1 cut(s) 646
Bme18I GGWCC 1 cut(s) 641
BmgBI CACGTC 1 cut(s) 64
BmgT120I GGNCC 1 cut(s) 641
BmiI GGNNCC 1 cut(s) 643
BmrFI CCNGG 1 cut(s) 646
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 2 cut(s) 290, 647
Bpu10I CCTNAGC 1 cut(s) 448
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 644, 645
BsaWI WCCGGW 1 cut(s) 350
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 2 cut(s) 123, 592
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 646
BseDI CCNNGG 2 cut(s) 644, 645
BseGI GGATG 2 cut(s) 441, 578
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 2 cut(s) 123, 592
BseRI GAGGAG 2 cut(s) 46, 436
BseXI GCAGC 2 cut(s) 168, 474
BsgI GTGCAG 1 cut(s) 611
Bsh1236I CGCG 3 cut(s) 124, 231, 459
BshFI GGCC 1 cut(s) 521
BshTI ACCGGT 1 cut(s) 350
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 627
BsmAI GTCTC 2 cut(s) 384, 405
BsmFI GGGAC 1 cut(s) 627
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 521
Bsp143I GATC 2 cut(s) 244, 469
BspACI CCGC 2 cut(s) 229, 453
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 1 cut(s) 461
BspFNI CGCG 3 cut(s) 124, 231, 459
BspHI TCATGA 1 cut(s) 301
BspLI GGNNCC 1 cut(s) 643
BsrBI CCGCTC 1 cut(s) 455
BsrDI GCAATG 1 cut(s) 390
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 2 cut(s) 123, 592
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 2 cut(s) 644, 645
BssMI GATC 2 cut(s) 244, 469
BssNI GRCGYC 1 cut(s) 255
Bst2UI CCWGG 1 cut(s) 646
Bst4CI ACNGT 4 cut(s) 92, 145, 296, 620
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 4 cut(s) 15, 172, 290, 457
BstDEI CTNAG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 441, 578
BstFNI CGCG 3 cut(s) 124, 231, 459
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 2 cut(s) 247, 472
BstMAI GTCTC 2 cut(s) 384, 405
BstMBI GATC 2 cut(s) 244, 469
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 646
BstNSI RCATGY 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 644
BstUI CGCG 3 cut(s) 124, 231, 459
BstV1I GCAGC 2 cut(s) 168, 474
BstV2I GAAGAC 2 cut(s) 290, 647
BstXI CCANNNNNNTGG 1 cut(s) 118
BsuRI GGCC 1 cut(s) 521
BtrI CACGTC 1 cut(s) 64
BtsCI GGATG 2 cut(s) 441, 578
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 3 cut(s) 101, 116, 534
Cac8I GCNNGC 4 cut(s) 15, 172, 290, 457
CciI TCATGA 1 cut(s) 301
CfoI GCGC 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 641
CseI GACGC 1 cut(s) 244
Csp6I GTAC 1 cut(s) 463
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 4 cut(s) 41, 171, 302, 325
CviJI RGCY 8 cut(s) 220, 241, 452, 487, 502, 521, 535, 546
CviKI_1 RGCY 8 cut(s) 220, 241, 452, 487, 502, 521, 535, 546
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 1 cut(s) 448
DpnI GATC 2 cut(s) 246, 471
DpnII GATC 2 cut(s) 244, 469
DrdI GACNNNNNNGTC 1 cut(s) 419
DseDI GACNNNNNNGTC 1 cut(s) 419
Eco47I GGWCC 1 cut(s) 641
EcoRII CCWGG 1 cut(s) 644
FaeI CATG 4 cut(s) 44, 174, 305, 328
FaqI GGGAC 1 cut(s) 627
FatI CATG 4 cut(s) 40, 170, 301, 324
FbaI TGATCA 2 cut(s) 244, 469
Fnu4HI GCNGC 3 cut(s) 157, 453, 488
FokI GGATG 2 cut(s) 448, 565
Fsp4HI GCNGC 3 cut(s) 157, 453, 488
FspBI CTAG 1 cut(s) 497
GlaI GCGC 1 cut(s) 123
GluI GCNGC 3 cut(s) 157, 453, 488
HaeIII GGCC 1 cut(s) 521
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 244
HhaI GCGC 1 cut(s) 124
Hin1I GRCGYC 1 cut(s) 255
Hin1II CATG 4 cut(s) 44, 174, 305, 328
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 1 cut(s) 611
HpaI GTTAAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 365, 586
Hpy166II GTNNAC 3 cut(s) 134, 262, 463
Hpy188I TCNGA 4 cut(s) 182, 373, 384, 571
Hpy188III TCNNGA 6 cut(s) 29, 148, 302, 311, 433, 497
Hpy8I GTNNAC 3 cut(s) 134, 262, 463
Hpy99I CGWCG 2 cut(s) 260, 603
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 4 cut(s) 92, 145, 296, 620
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 7 cut(s) 13, 156, 170, 278, 338, 395, 628
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 448
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 1 cut(s) 255
Hsp92II CATG 4 cut(s) 44, 174, 305, 328
HspAI GCGC 1 cut(s) 122
Ksp22I TGATCA 2 cut(s) 244, 469
KspAI GTTAAC 1 cut(s) 262
Kzo9I GATC 2 cut(s) 244, 469
LpnPI CCDG 9 cut(s) 104, 133, 302, 364, 567, 605, 631, 638, 658
Lsp1109I GCAGC 2 cut(s) 168, 474
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 497
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 3 cut(s) 43, 574, 659
MalI GATC 2 cut(s) 246, 471
MbiI CCGCTC 1 cut(s) 455
MboI GATC 2 cut(s) 244, 469
MboII GAAGA 2 cut(s) 290, 647
MluCI AATT 4 cut(s) 24, 374, 386, 584
MlyI GAGTC 1 cut(s) 620
MnlI CCTC 6 cut(s) 64, 67, 176, 408, 457, 565
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 222, 261
MslI CAYNNNNRTG 2 cut(s) 194, 527
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 646
Mva1269I GAATGC 1 cut(s) 359
MvaI CCWGG 1 cut(s) 646
MvnI CGCG 3 cut(s) 124, 231, 459
MwoI GCNNNNNNNGC 1 cut(s) 275
NdeII GATC 2 cut(s) 244, 469
NlaIII CATG 4 cut(s) 44, 174, 305, 328
NlaIV GGNNCC 1 cut(s) 643
NmuCI GTSAC 2 cut(s) 43, 574
NspI RCATGY 1 cut(s) 174
OliI CACNNNNGTG 1 cut(s) 527
PaeI GCATGC 1 cut(s) 174
PagI TCATGA 1 cut(s) 301
PasI CCCWGGG 1 cut(s) 645
PcsI WCGNNNNNNNCGW 1 cut(s) 556
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 654
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 3 cut(s) 158, 454, 489
PleI GAGTC 1 cut(s) 619
PpsI GAGTC 1 cut(s) 619
Psp6I CCWGG 1 cut(s) 644
PspGI CCWGG 1 cut(s) 644
PspN4I GGNNCC 1 cut(s) 643
PspPI GGNCC 1 cut(s) 641
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
RseI CAYNNNNRTG 2 cut(s) 194, 527
SaqAI TTAA 2 cut(s) 222, 261
SatI GCNGC 3 cut(s) 157, 453, 488
Sau3AI GATC 2 cut(s) 244, 469
Sau96I GGNCC 1 cut(s) 641
SchI GAGTC 1 cut(s) 620
ScrFI CCNGG 1 cut(s) 646
SfaNI GCATC 1 cut(s) 325
SinI GGWCC 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 194, 527
SphI GCATGC 1 cut(s) 174
Sse9I AATT 4 cut(s) 24, 374, 386, 584
SsiI CCGC 2 cut(s) 229, 453
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 644
TaaI ACNGT 4 cut(s) 92, 145, 296, 620
TaiI ACGT 1 cut(s) 66
TasI AATT 4 cut(s) 24, 374, 386, 584
TatI WGTACW 1 cut(s) 462
TauI GCSGC 1 cut(s) 455
Tru1I TTAA 2 cut(s) 222, 261
Tru9I TTAA 2 cut(s) 222, 261
TscAI CASTG 3 cut(s) 101, 123, 534
TseFI GTSAC 2 cut(s) 43, 574
TseI GCWGC 2 cut(s) 156, 487
Tsp45I GTSAC 2 cut(s) 43, 574
TspDTI ATGAA 5 cut(s) 290, 318, 379, 466, 555
TspGWI ACGGA 3 cut(s) 119, 548, 648
TspRI CASTG 3 cut(s) 101, 123, 534
VpaK11BI GGWCC 1 cut(s) 641
XapI RAATTY 2 cut(s) 386, 584
XbaI TCTAGA 1 cut(s) 496
XceI RCATGY 1 cut(s) 174
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.