Rorug04G0360300

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000867
Physical Location & Seq
Forward (+)
53295547 .. 53296767
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0360300.1

Sequence Viewer

Length: 492 bp
ATGGAGCAGCAGGGAGAGGAGAAGATGAAGAAGAAGGTGATGGTGGCAATTGATGAGAGCGAGCTTAGCCACTACGCGCTAGAATGGACCCTCGAAAATCTTGGCAACACCATTCATAATTCTGAGCTACTCGTCTTCACTGCACAGCCCACCACCATTGATTTTGGTTACACAAACAATGTTCTCGATCCATTTTGTTTTACTCCTGAGCTGGTAGCAGCTATACAAGAAAACTACAAGAAGGTGGCATTGGTTTTGCTGGATAAAGCTAAAGACATCTGCGCCAACCATGGGATTGTTGCAGAAACAGTAACAGAGGTTGGTGATCCTAAAAAGGCAATATGTGAAGCGGTAGAAAAATTCAAGATCGAGTTACTAGTACTAGGCAGTCATGGTCGAGGAACTGTACAAAGGGCTTTCCTGGGAAGTGTCAGCAATTACTGCGTTCATAATGCCGGATGTACTGTTCTTGTTGTGAGGAAACCAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

163

Amino Acids

17.99

Weight (kDa)

5.53

Isoelectric Point (pI)

24.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 10 - 160 2.3e-29 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 77
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 182, 320
AcsI RAATTY 1 cut(s) 359
AfaI GTAC 3 cut(s) 381, 408, 463
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 1 cut(s) 364
AhlI ACTAGT 1 cut(s) 376
AjnI CCWGG 1 cut(s) 420
AjuI GAANNNNNNNTTGG 2 cut(s) 233, 265
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 5 cut(s) 64, 127, 211, 221, 269
AluI AGCT 5 cut(s) 64, 127, 211, 221, 269
AlwI GGATC 2 cut(s) 182, 320
ApeKI GCWGC 2 cut(s) 7, 218
ApoI RAATTY 1 cut(s) 359
AspLEI GCGC 2 cut(s) 79, 284
AspS9I GGNCC 1 cut(s) 87
AsuHPI GGTGA 2 cut(s) 49, 335
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 127
BbvI GCAGC 2 cut(s) 19, 230
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 422
BcuI ACTAGT 1 cut(s) 376
BfaI CTAG 3 cut(s) 80, 377, 383
BisI GCNGC 2 cut(s) 8, 219
BlpI GCTNAGC 1 cut(s) 65
BlsI GCNGC 2 cut(s) 9, 220
BmcAI AGTACT 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 207
Bpu1102I GCTNAGC 1 cut(s) 65
BsaJI CCNNGG 2 cut(s) 289, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 422
BseDI CCNNGG 2 cut(s) 289, 421
BseGI GGATG 1 cut(s) 464
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMII CTCAG 2 cut(s) 114, 198
BseRI GAGGAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 19, 230
BsgI GTGCAG 1 cut(s) 126
Bsh1236I CGCG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 291
Bsp1407I TGTACA 1 cut(s) 406
Bsp143I GATC 3 cut(s) 187, 325, 366
Bsp1720I GCTNAGC 1 cut(s) 65
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 115, 199
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 89
BspPI GGATC 2 cut(s) 182, 320
BsrGI TGTACA 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 289, 421
BssMI GATC 3 cut(s) 187, 325, 366
BssT1I CCWWGG 1 cut(s) 289
Bst2UI CCWGG 1 cut(s) 422
Bst4CI ACNGT 3 cut(s) 310, 406, 466
BstAPI GCANNNNNTGC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 406
BstC8I GCNNGC 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 65, 123, 207
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 1 cut(s) 464
BstFNI CGCG 1 cut(s) 77
BstHHI GCGC 2 cut(s) 79, 284
BstKTI GATC 3 cut(s) 190, 328, 369
BstMBI GATC 3 cut(s) 187, 325, 366
BstMWI GCNNNNNNNGC 2 cut(s) 66, 441
BstNI CCWGG 1 cut(s) 422
BstSCI CCNGG 1 cut(s) 420
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 19, 230
BstV2I GAAGAC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 1 cut(s) 464
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 62
CfoI GCGC 2 cut(s) 79, 284
Cfr13I GGNCC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 380, 407, 462
CspCI CAANNNNNGTGG 2 cut(s) 139, 174
CviAII CATG 2 cut(s) 290, 392
CviJI RGCY 8 cut(s) 64, 69, 127, 148, 211, 221, 269, 416
CviKI_1 RGCY 8 cut(s) 64, 69, 127, 148, 211, 221, 269, 416
CviQI GTAC 3 cut(s) 380, 407, 462
DdeI CTNAG 3 cut(s) 65, 123, 207
DpnI GATC 3 cut(s) 189, 327, 368
DpnII GATC 3 cut(s) 187, 325, 366
Eco130I CCWWGG 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 420
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 293, 395
FaiI YATR 6 cut(s) 117, 224, 291, 343, 393, 450
FatI CATG 2 cut(s) 289, 391
Fnu4HI GCNGC 2 cut(s) 8, 219
FokI GGATG 1 cut(s) 471
Fsp4HI GCNGC 2 cut(s) 8, 219
FspBI CTAG 3 cut(s) 80, 377, 383
GlaI GCGC 2 cut(s) 78, 283
GluI GCNGC 2 cut(s) 8, 219
HapII CCGG 1 cut(s) 456
HhaI GCGC 2 cut(s) 79, 284
Hin1II CATG 2 cut(s) 293, 395
Hin6I GCGC 2 cut(s) 77, 282
HinP1I GCGC 2 cut(s) 77, 282
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 49, 335
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 3 cut(s) 185, 206, 364
HpyAV CCTTC 2 cut(s) 28, 235
HpyCH4III ACNGT 3 cut(s) 310, 406, 466
HpyCH4V TGCA 2 cut(s) 143, 302
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 441
HpyF3I CTNAG 3 cut(s) 65, 123, 207
Hsp92II CATG 2 cut(s) 293, 395
HspAI GCGC 2 cut(s) 77, 282
Kzo9I GATC 3 cut(s) 187, 325, 366
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 6 cut(s) 197, 219, 245, 407, 434, 469
Lsp1109I GCAGC 2 cut(s) 19, 230
MaeI CTAG 3 cut(s) 80, 377, 383
MaeIII GTNAC 3 cut(s) 167, 310, 372
MalI GATC 3 cut(s) 189, 327, 368
MboI GATC 3 cut(s) 187, 325, 366
MboII GAAGA 4 cut(s) 34, 40, 43, 127
MfeI CAATTG 1 cut(s) 48
MluCI AATT 5 cut(s) 48, 118, 359, 436, 486
MnlI CCTC 5 cut(s) 10, 101, 310, 392, 471
MspI CCGG 1 cut(s) 456
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 48
MvaI CCWGG 1 cut(s) 422
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 66, 441
NcoI CCATGG 1 cut(s) 289
NdeII GATC 3 cut(s) 187, 325, 366
NlaIII CATG 2 cut(s) 293, 395
NlaIV GGNNCC 1 cut(s) 89
PkrI GCNGC 2 cut(s) 9, 220
Psp6I CCWGG 1 cut(s) 420
PspGI CCWGG 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 89
PspPI GGNCC 1 cut(s) 87
RsaI GTAC 3 cut(s) 381, 408, 463
RsaNI GTAC 3 cut(s) 380, 407, 462
SatI GCNGC 2 cut(s) 8, 219
Sau3AI GATC 3 cut(s) 187, 325, 366
Sau96I GGNCC 1 cut(s) 87
ScaI AGTACT 1 cut(s) 381
ScrFI CCNGG 1 cut(s) 422
SetI ASST 8 cut(s) 39, 66, 129, 213, 223, 246, 271, 321
SinI GGWCC 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 376
Sse9I AATT 5 cut(s) 48, 118, 359, 436, 486
SsiI CCGC 1 cut(s) 350
SspMI CTAG 3 cut(s) 80, 377, 383
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 310, 406, 466
TaqI TCGA 4 cut(s) 93, 186, 369, 397
TasI AATT 5 cut(s) 48, 118, 359, 436, 486
TatI WGTACW 3 cut(s) 379, 406, 461
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 7, 218
TspDTI ATGAA 3 cut(s) 41, 104, 437
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 1 cut(s) 359
XspI CTAG 3 cut(s) 80, 377, 383
ZrmI AGTACT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.