Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

24558083 .. 24558889

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018023

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTCGACTTCTTGGGATCCGAAGCACAAAACTGCTTGAAATCCTCTGCAATCATCCTCAACACGTTTGACGAATTTGAGCATGAAGTGTTAGAAGAAATCTCAGCCATGTTTCCTAACATTTACACAATAGGTCCACTTGCTTTGCTTGGAAGGCACGTGCCTGAAAACAAATTGCTCAAGTCCCTCAGCTCAGGCTTGTGGAAAGAAGATGCAAAATGCCTTGAATGGCTTGACAAACAGAAACCCGATTCGGTTGTGCCAGATGTGGTAAAAGGGGATTCGGTTGTCTTGCCCGAAGAATTTTTCGAGGAGATCAAGGATAGGGGTTACATAGCAAGTTGGTGTCCACAGGAGCAAGTGCTAGCACATCCATCAGTCGGGGTTTTTCTAACTCATTGTGGTTGGAATTCTACTATTGAAACTATATCAGCGGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCTGAGCAACAGACGAATTGTCGTTTCCTGTGTACCAATTGGGGAATTGGTATGGAGGTAAACAATGATGTTAAACGCGATGAGATTGAAGTGCTTGTCAAGGAAATGCTGGAAGGGGAAAAAGGCATGCAGATGAGGCAAAAGGCACAGGAGTGGAAGAAGAAAGCAATAGCGGCTACTGACACTGGAGGATCATCACACAATAATTTTGAGAGACTGATTAAGGAGGCTCTTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

235

Amino Acids

26.44

Weight (kDa)

4.87

Isoelectric Point (pI)

44.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	111 - 195	4.8e-20	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	543
AciI	CCGC	2 cut(s)	434, 638
AclWI	GGATC	3 cut(s)	12, 25, 664
AcsI	RAATTY	3 cut(s)	74, 302, 409
AcvI	CACGTG	1 cut(s)	160
AfaI	GTAC	1 cut(s)	499
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	40, 227, 422, 554, 701
AhdI	GACNNNNNGTC	1 cut(s)	483
AleI	CACNNNNGTG	1 cut(s)	616
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	3 cut(s)	12, 25, 664
AoxI	GGCC	1 cut(s)	455
ApoI	RAATTY	3 cut(s)	74, 302, 409
AspS9I	GGNCC	1 cut(s)	134
AsuNHI	GCTAGC	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	17
BbrPI	CACGTG	1 cut(s)	160
BbvCI	CCTCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	673
BfaI	CTAG	1 cut(s)	365
BisI	GCNGC	1 cut(s)	639
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	134
BmeRI	GACNNNNNGTC	1 cut(s)	483
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	1 cut(s)	19
BmsI	GCATC	1 cut(s)	202
BmtI	GCTAGC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	672
Bpu10I	CCTNAGC	2 cut(s)	188, 193
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	1 cut(s)	655
BseGI	GGATG	2 cut(s)	54, 370
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMII	CTCAG	4 cut(s)	117, 202, 207, 459
BseNI	ACTGG	1 cut(s)	655
BseRI	GAGGAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	1 cut(s)	673
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	457
Bsp143I	GATC	3 cut(s)	17, 315, 656
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	2 cut(s)	434, 638
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	4 cut(s)	116, 201, 206, 460
BspFNI	CGCG	1 cut(s)	543
BspLI	GGNNCC	1 cut(s)	19
BspOI	GCTAGC	1 cut(s)	368
BspPI	GGATC	3 cut(s)	12, 25, 664
BspQI	GCTCTTC	1 cut(s)	702
BsrI	ACTGG	1 cut(s)	655
BssMI	GATC	3 cut(s)	17, 315, 656
Bst6I	CTCTTC	1 cut(s)	702
BstBAI	YACGTR	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	366, 455, 593
BstDEI	CTNAG	4 cut(s)	103, 188, 193, 468
BstF5I	GGATG	2 cut(s)	54, 370
BstFNI	CGCG	1 cut(s)	543
BstKTI	GATC	3 cut(s)	20, 318, 659
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	3 cut(s)	17, 315, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 601, 638
BstNSI	RCATGY	1 cut(s)	595
BstUI	CGCG	1 cut(s)	543
BstX2I	RGATCY	1 cut(s)	17
BstYI	RGATCY	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	457
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	54, 370
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	3 cut(s)	366, 455, 593
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	498
CspCI	CAANNNNNGTGG	2 cut(s)	126, 161
CviAII	CATG	3 cut(s)	83, 109, 592
CviJI	RGCY	7 cut(s)	107, 192, 198, 232, 457, 641, 695
CviKI_1	RGCY	7 cut(s)	107, 192, 198, 232, 457, 641, 695
CviQI	GTAC	1 cut(s)	498
DdeI	CTNAG	4 cut(s)	103, 188, 193, 468
DpnI	GATC	3 cut(s)	19, 317, 658
DpnII	GATC	3 cut(s)	17, 315, 656
DriI	GACNNNNNGTC	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	702
Eam1105I	GACNNNNNGTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	702
Eco47I	GGWCC	1 cut(s)	134
Eco72I	CACGTG	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	409
FaeI	CATG	3 cut(s)	86, 112, 595
FaiI	YATR	6 cut(s)	84, 110, 335, 428, 518, 593
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	3 cut(s)	82, 108, 591
FauI	CCCGC	1 cut(s)	427
Fnu4HI	GCNGC	1 cut(s)	639
FokI	GGATG	2 cut(s)	41, 357
Fsp4HI	GCNGC	1 cut(s)	639
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	1 cut(s)	639
GsuI	CTGGAG	1 cut(s)	672
HaeIII	GGCC	1 cut(s)	457
Hin1II	CATG	3 cut(s)	86, 112, 595
HinfI	GANTC	2 cut(s)	251, 281
Hpy166II	GTNNAC	4 cut(s)	137, 350, 498, 526
Hpy188I	TCNGA	1 cut(s)	22
Hpy8I	GTNNAC	4 cut(s)	137, 350, 498, 526
HpyAV	CCTTC	2 cut(s)	147, 572
HpyCH4IV	ACGT	2 cut(s)	65, 159
HpyCH4V	TGCA	3 cut(s)	50, 215, 595
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 601, 638
HpyF3I	CTNAG	4 cut(s)	103, 188, 193, 468
HpySE526I	ACGT	2 cut(s)	65, 159
Hsp92II	CATG	3 cut(s)	86, 112, 595
Kzo9I	GATC	3 cut(s)	17, 315, 656
LguI	GCTCTTC	1 cut(s)	702
LmnI	GCTCC	1 cut(s)	355
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	365
MaeII	ACGT	2 cut(s)	65, 159
MaeIII	GTNAC	1 cut(s)	329
MalI	GATC	3 cut(s)	19, 317, 658
MboI	GATC	3 cut(s)	17, 315, 656
MboII	GAAGA	6 cut(s)	107, 221, 311, 634, 637, 689
MfeI	CAATTG	1 cut(s)	502
MflI	RGATCY	1 cut(s)	17
MluCI	AATT	9 cut(s)	74, 173, 302, 409, 447, 481, 502, 510, 670
MmeI	TCCRAC	1 cut(s)	386
MnlI	CCTC	8 cut(s)	55, 68, 197, 304, 514, 594, 647, 685
MseI	TTAA	2 cut(s)	537, 687
MslI	CAYNNNNRTG	2 cut(s)	596, 616
MspA1I	CMGCKG	1 cut(s)	434
MunI	CAATTG	1 cut(s)	502
MvnI	CGCG	1 cut(s)	543
MwoI	GCNNNNNNNGC	3 cut(s)	154, 601, 638
NdeII	GATC	3 cut(s)	17, 315, 656
NheI	GCTAGC	1 cut(s)	364
NlaIII	CATG	3 cut(s)	86, 112, 595
NlaIV	GGNNCC	1 cut(s)	19
NspI	RCATGY	1 cut(s)	595
OliI	CACNNNNGTG	1 cut(s)	616
PaeI	GCATGC	1 cut(s)	595
PciSI	GCTCTTC	1 cut(s)	702
PfeI	GAWTC	2 cut(s)	251, 281
PkrI	GCNGC	1 cut(s)	640
PmaCI	CACGTG	1 cut(s)	160
PmlI	CACGTG	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	160
PspCI	CACGTG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	19
PspPI	GGNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	17
RsaI	GTAC	1 cut(s)	499
RsaNI	GTAC	1 cut(s)	498
RseI	CAYNNNNRTG	2 cut(s)	596, 616
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	537, 687
SatI	GCNGC	1 cut(s)	639
Sau3AI	GATC	3 cut(s)	17, 315, 656
Sau96I	GGNCC	1 cut(s)	134
SetI	ASST	5 cut(s)	68, 136, 162, 194, 525
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	596, 616
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SphI	GCATGC	1 cut(s)	595
Sse9I	AATT	9 cut(s)	74, 173, 302, 409, 447, 481, 502, 510, 670
SsiI	CCGC	2 cut(s)	434, 638
SspMI	CTAG	1 cut(s)	365
TaiI	ACGT	2 cut(s)	68, 162
TaqI	TCGA	2 cut(s)	6, 309
TasI	AATT	9 cut(s)	74, 173, 302, 409, 447, 481, 502, 510, 670
TauI	GCSGC	1 cut(s)	641
TfiI	GAWTC	2 cut(s)	251, 281
Tru1I	TTAA	2 cut(s)	537, 687
Tru9I	TTAA	2 cut(s)	537, 687
TscAI	CASTG	1 cut(s)	655
TspDTI	ATGAA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	655
VpaK11BI	GGWCC	1 cut(s)	134
XapI	RAATTY	3 cut(s)	74, 302, 409
XceI	RCATGY	1 cut(s)	595
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.