Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

4380021 .. 4381892

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGGGTTCAACACAACTAAGAGCCAAAGAACTCCATGCAGTTTGTGTTCCTTTCCCGGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGTACTCCAAGGGATTCCACATAACCTTTGTCAACACCGAGTTCAATCACCAGCGTTTAATCCGGTCCAGAGGCTCCGACTCCATCGAGGGACTACCGGACTTCCAATTCGCTATCATACCGGATGGACTGCCACCTTCAGATGAAGATGCAACCCAAGATGTTCCATCTCTTTGCTACTCCATCAGGAAAACATGTCTAGGCCCTTTTAAGGAGCTGGTGACTAAACTCAATTCCTCGTTTCAAGTGCCACATATTACTTGTATAGTTTGTGATGGTATCATGGGATTTGGGAGGGAAGCTGCTAAGGAACTAGGGATTCCTGTGGTTCAGTTTTGGACGACTTCTGCTTGTGGCTTCATGGGGTACCTTCAGTACAGCGAATTCGTCAAAAGAGGCATTGTTCCATTCAAAGATGAAAGTTTCATGCAAGATGGTACACTCGATAAGCCAATTGATTGGATTCCGGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTCATCAGAGTCACTAATGTCAACGATATAATGTTCGACTACGTGGGATCTGAAGCACAGAACTGCTTAAAATCCTCTGCAATCATCCTAAACACGTTTGACGAATTTGAGCGTCAAGTGTTAGAAGAACTCTCAGTCATGTTCCCCGATATTTACACAATAGGTCCACTTGCTCTGCTTGGTAGGCATGTGCCCGAAAGCAAATTGGTCAAGTCACTAAGCTCAGGCTTATGGAAAGAAGACGCAAAATGCCTTGAATGGCTTGACAAACAGAAACAAGATTCGGTTGTGTATGTGAATTATGGGAGCATAGCTGTGATGACAGACCAACATCTGATAGAACTTGCATGGGGGCTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTCAGGCCTGATGTTGTAAAAGGTGATTCGGTGGTTTTACTCCAAGATTTTTTTGAGGAGATTAAGGATAGGGGTTACGTAACAAGTTGGTGTCCACAGGAGCAAGTGCTAGCACATCCATCAGTTGGGGTTTTTCTAACACATGGTGGTTGGAATTCTACTATTGAAACTATATCAGAGGGTGTGCCTGTACTTTGCTGGCCTTTCCGTGGAGATCAGCTTACGAATTGCCGCTTCCTGTGTACTGATTGGGGAATTGGTATGGAGGTGAACAAGGATGTTAAGCGTGACGAGATTGAAGCACTTGTTAAGGAAATGCTAGAAGGGGAGAAATGCATGAAGATGAGGCAAACGGCAAGGGAATGGAAGAAGAAAGCAATAGAAGCTACTGATATTGGAGGATCATCTTACAATAATTTTGAGAGACTGATCAAGGTGGCACTTCATAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

481

Amino Acids

54.29

Weight (kDa)

5.71

Isoelectric Point (pI)

39.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 138	1.6e-09	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	101 - 440	3.1e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AccB7I	CCANNNNNTGG	1 cut(s)	1115
AciI	CCGC	1 cut(s)	1222
AclWI	GGATC	2 cut(s)	658, 1399
AcsI	RAATTY	3 cut(s)	482, 707, 1144
AcuI	CTGAAG	3 cut(s)	222, 455, 675
AdeI	CACNNNGTG	1 cut(s)	1136
AfaI	GTAC	6 cut(s)	104, 467, 476, 538, 1182, 1234
AfiI	CCNNNNNNNGG	4 cut(s)	62, 310, 1115, 1199
AflIII	ACRYGT	2 cut(s)	293, 696
AgsI	TTSAA	7 cut(s)	9, 145, 344, 511, 860, 1157, 1289
AluBI	AGCT	8 cut(s)	97, 316, 401, 603, 825, 917, 1210, 1376
AluI	AGCT	8 cut(s)	97, 316, 401, 603, 825, 917, 1210, 1376
Alw26I	GTCTC	1 cut(s)	1408
AlwI	GGATC	2 cut(s)	658, 1399
AoxI	GGCC	4 cut(s)	64, 301, 995, 1190
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	3 cut(s)	482, 707, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
Asp718I	GGTACC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	165, 302, 767
AsuC2I	CCSGG	2 cut(s)	56, 567
AsuHPI	GGTGA	4 cut(s)	140, 331, 1025, 1270
AsuNHI	GCTAGC	1 cut(s)	1099
AvaII	GGWCC	2 cut(s)	165, 767
BaeGI	GKGCMC	1 cut(s)	798
BanI	GGYRCC	1 cut(s)	465
BbsI	GAAGAC	1 cut(s)	849
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	7 cut(s)	191, 218, 274, 290, 368, 527, 1117
BceAI	ACGGC	1 cut(s)	1359
BclI	TGATCA	1 cut(s)	1419
BcnI	CCSGG	2 cut(s)	56, 567
BcoDI	GTCTC	1 cut(s)	1408
BfaI	CTAG	5 cut(s)	299, 413, 600, 1100, 1310
BisI	GCNGC	2 cut(s)	402, 1222
BlsI	GCNGC	2 cut(s)	403, 1223
Bme1390I	CCNGG	2 cut(s)	56, 567
Bme18I	GGWCC	2 cut(s)	165, 767
BmgT120I	GGNCC	3 cut(s)	165, 302, 767
BmiI	GGNNCC	2 cut(s)	175, 467
BmrFI	CCNGG	2 cut(s)	56, 567
BmsI	GCATC	2 cut(s)	72, 238
BmtI	GCTAGC	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	849
Bpu10I	CCTNAGC	2 cut(s)	405, 826
BpuEI	CTTGAG	1 cut(s)	572
BpuMI	CCSGG	2 cut(s)	56, 567
BsaAI	YACGTR	2 cut(s)	646, 1069
BsaJI	CCNNGG	2 cut(s)	108, 1198
BsaWI	WCCGGW	3 cut(s)	162, 196, 220
Bsc4I	CCNNNNNNNGG	4 cut(s)	62, 310, 1115, 1199
BseDI	CCNNGG	2 cut(s)	108, 1198
BseGI	GGATG	5 cut(s)	229, 594, 687, 1105, 1273
BseLI	CCNNNNNNNGG	4 cut(s)	62, 310, 1115, 1199
BseMII	CTCAG	2 cut(s)	750, 840
BseRI	GAGGAG	1 cut(s)	1061
BseSI	GKGCMC	1 cut(s)	798
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	4 cut(s)	66, 303, 997, 1192
BshNI	GGYRCC	1 cut(s)	465
BsiSI	CCGG	5 cut(s)	56, 163, 197, 221, 566
BslFI	GGGAC	1 cut(s)	204
BslI	CCNNNNNNNGG	4 cut(s)	62, 310, 1115, 1199
BsmAI	GTCTC	1 cut(s)	1408
BsmFI	GGGAC	1 cut(s)	204
BsnI	GGCC	4 cut(s)	66, 303, 997, 1192
Bsp1286I	GDGCHC	1 cut(s)	798
Bsp143I	GATC	4 cut(s)	650, 1204, 1391, 1419
BspACI	CCGC	1 cut(s)	1222
BspANI	GGCC	4 cut(s)	66, 303, 997, 1192
BspCNI	CTCAG	2 cut(s)	749, 839
BspLI	GGNNCC	2 cut(s)	175, 467
BspOI	GCTAGC	1 cut(s)	1103
BspPI	GGATC	2 cut(s)	658, 1399
BspT107I	GGYRCC	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	108, 1198
BssMI	GATC	4 cut(s)	650, 1204, 1391, 1419
BssT1I	CCWWGG	1 cut(s)	108
BstBAI	YACGTR	2 cut(s)	646, 1069
BstC8I	GCNNGC	4 cut(s)	960, 971, 1101, 1190
BstDEI	CTNAG	5 cut(s)	17, 405, 736, 821, 826
BstDSI	CCRYGG	1 cut(s)	1198
BstF5I	GGATG	5 cut(s)	229, 594, 687, 1105, 1273
BstKTI	GATC	4 cut(s)	653, 1207, 1394, 1422
BstMAI	GTCTC	1 cut(s)	1408
BstMBI	GATC	4 cut(s)	650, 1204, 1391, 1419
BstMWI	GCNNNNNNNGC	2 cut(s)	787, 1373
BstNSI	RCATGY	2 cut(s)	297, 794
BstSCI	CCNGG	2 cut(s)	54, 565
BstSLI	GKGCMC	1 cut(s)	798
BstSNI	TACGTA	1 cut(s)	1069
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	650
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	650
BsuRI	GGCC	4 cut(s)	66, 303, 997, 1192
BtgI	CCRYGG	1 cut(s)	1198
BtsCI	GGATG	5 cut(s)	229, 594, 687, 1105, 1273
Cac8I	GCNNGC	4 cut(s)	960, 971, 1101, 1190
Cfr13I	GGNCC	3 cut(s)	165, 302, 767
CseI	GACGC	2 cut(s)	704, 854
Csp6I	GTAC	6 cut(s)	103, 466, 475, 537, 1181, 1233
CviQI	GTAC	6 cut(s)	103, 466, 475, 537, 1181, 1233
DdeI	CTNAG	5 cut(s)	17, 405, 736, 821, 826
DpnI	GATC	4 cut(s)	652, 1206, 1393, 1421
DpnII	GATC	4 cut(s)	650, 1204, 1391, 1419
DraIII	CACNNNGTG	1 cut(s)	1136
Eco105I	TACGTA	1 cut(s)	1069
Eco130I	CCWWGG	1 cut(s)	108
Eco147I	AGGCCT	1 cut(s)	997
Eco47I	GGWCC	2 cut(s)	165, 767
Eco57I	CTGAAG	3 cut(s)	222, 455, 675
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	2 cut(s)	482, 1144
EcoT14I	CCWWGG	1 cut(s)	108
EcoT22I	ATGCAT	1 cut(s)	1328
ErhI	CCWWGG	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	204
FbaI	TGATCA	1 cut(s)	1419
Fnu4HI	GCNGC	2 cut(s)	402, 1222
FokI	GGATG	5 cut(s)	236, 581, 674, 1092, 1280
Fsp4HI	GCNGC	2 cut(s)	402, 1222
FspBI	CTAG	5 cut(s)	299, 413, 600, 1100, 1310
GluI	GCNGC	2 cut(s)	402, 1222
HaeIII	GGCC	4 cut(s)	66, 303, 997, 1192
HapII	CCGG	5 cut(s)	56, 163, 197, 221, 566
HgaI	GACGC	2 cut(s)	704, 854
HincII	GTYRAC	3 cut(s)	73, 133, 625
HindII	GTYRAC	3 cut(s)	73, 133, 625
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	7 cut(s)	114, 179, 418, 562, 612, 884, 1016
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	5 cut(s)	56, 163, 197, 221, 566
HphI	GGTGA	4 cut(s)	140, 331, 1025, 1270
Hpy166II	GTNNAC	8 cut(s)	73, 133, 539, 625, 770, 1085, 1233, 1261
Hpy188I	TCNGA	6 cut(s)	178, 241, 611, 655, 939, 1168
Hpy188III	TCNNGA	2 cut(s)	168, 286
Hpy8I	GTNNAC	8 cut(s)	73, 133, 539, 625, 770, 1085, 1233, 1261
HpyAV	CCTTC	3 cut(s)	246, 479, 1307
HpyCH4IV	ACGT	3 cut(s)	645, 698, 1068
HpyCH4V	TGCA	8 cut(s)	38, 85, 251, 529, 683, 950, 962, 1326
HpyF10VI	GCNNNNNNNGC	2 cut(s)	787, 1373
HpyF3I	CTNAG	5 cut(s)	17, 405, 736, 821, 826
HpySE526I	ACGT	3 cut(s)	645, 698, 1068
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	1419
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	650, 1204, 1391, 1419
LmnI	GCTCC	4 cut(s)	179, 313, 909, 1090
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	2 cut(s)	72, 238
MaeI	CTAG	5 cut(s)	299, 413, 600, 1100, 1310
MaeII	ACGT	3 cut(s)	645, 698, 1068
MaeIII	GTNAC	6 cut(s)	319, 613, 816, 1064, 1069, 1277
MalI	GATC	4 cut(s)	652, 1206, 1393, 1421
MboI	GATC	4 cut(s)	650, 1204, 1391, 1419
MboII	GAAGA	7 cut(s)	257, 586, 740, 854, 1342, 1369, 1372
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	798
MlyI	GAGTC	2 cut(s)	173, 621
MmeI	TCCRAC	2 cut(s)	201, 1121
Mph1103I	ATGCAT	1 cut(s)	1328
MseI	TTAA	7 cut(s)	72, 158, 309, 671, 1053, 1272, 1299
MslI	CAYNNNNRTG	2 cut(s)	917, 1331
MspI	CCGG	5 cut(s)	56, 163, 197, 221, 566
MspR9I	CCNGG	2 cut(s)	56, 567
MunI	CAATTG	1 cut(s)	552
MwoI	GCNNNNNNNGC	2 cut(s)	787, 1373
NciI	CCSGG	2 cut(s)	56, 567
NdeII	GATC	4 cut(s)	650, 1204, 1391, 1419
NheI	GCTAGC	1 cut(s)	1099
NlaIV	GGNNCC	2 cut(s)	175, 467
NmuCI	GTSAC	4 cut(s)	319, 613, 816, 1277
NsiI	ATGCAT	1 cut(s)	1328
NspI	RCATGY	2 cut(s)	297, 794
PceI	AGGCCT	1 cut(s)	997
PciI	ACATGT	1 cut(s)	293
PfeI	GAWTC	5 cut(s)	114, 418, 562, 884, 1016
PflMI	CCANNNNNTGG	1 cut(s)	1115
PkrI	GCNGC	2 cut(s)	403, 1223
PleI	GAGTC	2 cut(s)	173, 620
PpsI	GAGTC	2 cut(s)	173, 620
Ppu21I	YACGTR	2 cut(s)	646, 1069
PscI	ACATGT	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	175, 467
PspPI	GGNCC	3 cut(s)	165, 302, 767
PsuI	RGATCY	1 cut(s)	650
RsaI	GTAC	6 cut(s)	104, 467, 476, 538, 1182, 1234
RsaNI	GTAC	6 cut(s)	103, 466, 475, 537, 1181, 1233
RseI	CAYNNNNRTG	2 cut(s)	917, 1331
SaqAI	TTAA	7 cut(s)	72, 158, 309, 671, 1053, 1272, 1299
SatI	GCNGC	2 cut(s)	402, 1222
Sau3AI	GATC	4 cut(s)	650, 1204, 1391, 1419
Sau96I	GGNCC	3 cut(s)	165, 302, 767
SchI	GAGTC	2 cut(s)	173, 621
ScrFI	CCNGG	2 cut(s)	56, 567
SduI	GDGCHC	1 cut(s)	798
SfaNI	GCATC	2 cut(s)	72, 238
SinI	GGWCC	2 cut(s)	165, 767
SmiMI	CAYNNNNRTG	2 cut(s)	917, 1331
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SnaBI	TACGTA	1 cut(s)	1069
SseBI	AGGCCT	1 cut(s)	997
SsiI	CCGC	1 cut(s)	1222
SspMI	CTAG	5 cut(s)	299, 413, 600, 1100, 1310
StuI	AGGCCT	1 cut(s)	997
StyD4I	CCNGG	2 cut(s)	54, 565
StyI	CCWWGG	1 cut(s)	108
TaiI	ACGT	3 cut(s)	648, 701, 1071
TaqI	TCGA	3 cut(s)	186, 543, 639
TatI	WGTACW	4 cut(s)	102, 474, 1180, 1232
TauI	GCSGC	1 cut(s)	1224
TfiI	GAWTC	5 cut(s)	114, 418, 562, 884, 1016
Tru1I	TTAA	7 cut(s)	72, 158, 309, 671, 1053, 1272, 1299
Tru9I	TTAA	7 cut(s)	72, 158, 309, 671, 1053, 1272, 1299
TseFI	GTSAC	4 cut(s)	319, 613, 816, 1277
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	4 cut(s)	319, 613, 816, 1277
TspDTI	ATGAA	8 cut(s)	258, 448, 514, 531, 587, 595, 1343, 1424
TspGWI	ACGGA	1 cut(s)	1187
Van91I	CCANNNNNTGG	1 cut(s)	1115
VpaK11BI	GGWCC	2 cut(s)	165, 767
XapI	RAATTY	3 cut(s)	482, 707, 1144
XceI	RCATGY	2 cut(s)	297, 794
XspI	CTAG	5 cut(s)	299, 413, 600, 1100, 1310
Zsp2I	ATGCAT	1 cut(s)	1328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.