Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Forward (+)

25182480 .. 25184435

Gene Structure 1956 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48640

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGTATGATCAGATAAACATTCAATTCCATCAGCTTGGTTCTTTTCCTTCTTGCCTTGTTAACTTCCCAAACATGGTTGAAACTGAAACCAAAACACAACCTCATGTGGTTTGTGTTCCATACCCATCACAAGGCCATATTAGCCCTATGATGCAACTAGCGAAGCTCCTAAACTCAAGGGGCTTCCACATAACCTTTGTCAACACTGAGTTTAATCACAGGCGCTTTATCAGGTCGAGAGGGCACACATCATCCCTTAGCCGCCTGCCGGATTTTCGGTTCGAAACCATACCAGATGGACTGCCACCATGTGACAAAGATGCAACCCAAGACGTTCCAGCACTGAGTGATTCCACCAGAACAAACTGTCTTGGTCCATTCAAAGAGCTACTAATCAAGCTCAACAAGTTGTCCGAAGTCCCCCCGGTTAGTTGCGTAGTCTCAGATGGGGTTATGGGTTTTGGGAGGGAAGCTGCTGTGGAATTGGGTATTCCAGAGGTTCAGTTTTGGACTGCTTCTGCCTGTGGCTTCATGGGTTACTTGCAGTATGGTGAACTCCTGAAAAAAGGAATGGCTCCATTCAAAGATAAAGAATATAACAGCGATGATCCGGTACTCAACACACCAATTGATTTCCCAGGCGTGAAAAATGCCACTCTCAAAGATATCCCTTACCATCCTAATGAAATAATGTTCGATTTCATGGGATCAGAAGCACAGAACTGCTTGAAATCTTCTGCAATTATCTTCAACACCTTCGACGAATTTGAACATGAAGTGCTAGACGCAATCTCATCTACTTTCCCCAACAGTTACACGGTAGGTCCACTTTCTTTGCTATGCAGACATATACCAACTGAAACCCCAATCAAGTCACTCAACCCGAGCTTATGGAAAGAAGACCCAAAATTACTTGAATGGCTTGATAGATGGGAACCAAACTCAGTCGTGTATGTGAACTATGGCAGTGTGACTGTGATGACAGACCAGCATTTACAAGAATTTGCTTGGGGCTTAGCAAATAGCAAGCACCCATTTTTGTGGGTAGTAAGGCCTGATGTGGTAAAGAGTGAATCTGTAATTTTACCAGATGAATTTCTAGAGGAGGTCAAGGATAGGGGATATATAGCAAGTTGGGTACCACAAGAACAAGTGTTGGGGCATAAATCAGTTGGGGTTTTTCTGACTCATTGTGGTTGGAATTCTATGTTGGAAAGTGTAGGTGAGGGTGTGCCTGTGATTTGCTGGCCTTTCTTTGCTGATCAACAGACCAATTGTGGATTTGCTTGTGGACGTTGGGGCATTGGATTGGAGGTCAAGCATGATGTGAAGAGATGTGAAATTATAGGAGTTGTTAAGGAAATGATGGAAGGGGAGAAGGGGAAGGAGTTGAAGCAAAATGCATTGAAATGGAGGAAGAAGGCAATTGAAGCTACTGATATTGGTGGAGCATCTTATGGTAATTTTGATAGAATGATGGAGCATCTTATTAAAAAGGTGGAGATTTGGTTGAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

506

Amino Acids

57.18

Weight (kDa)

5.53

Isoelectric Point (pI)

40.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	36 - 162	6.3e-09	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	314 - 463	1.8e-23	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1138
AccB1I	GGYRCC	1 cut(s)	1138
AciI	CCGC	1 cut(s)	262
AclWI	GGATC	2 cut(s)	602, 715
AcsI	RAATTY	4 cut(s)	764, 1001, 1094, 1201
AdeI	CACNNNGTG	2 cut(s)	311, 347
AfaI	GTAC	2 cut(s)	615, 1140
AfiI	CCNNNNNNNGG	3 cut(s)	73, 131, 268
AjnI	CCWGG	1 cut(s)	637
AjuI	GAANNNNNNNTTGG	2 cut(s)	1193, 1225
AloI	GAACNNNNNNTCC	2 cut(s)	263, 295
AluBI	AGCT	7 cut(s)	34, 166, 388, 400, 473, 888, 1433
AluI	AGCT	7 cut(s)	34, 166, 388, 400, 473, 888, 1433
Alw26I	GTCTC	1 cut(s)	445
AlwI	GGATC	2 cut(s)	602, 715
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	3 cut(s)	133, 1052, 1247
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	4 cut(s)	764, 1001, 1094, 1201
Asp718I	GGTACC	1 cut(s)	1138
AspLEI	GCGC	1 cut(s)	225
AspS9I	GGNCC	2 cut(s)	374, 824
AsuC2I	CCSGG	1 cut(s)	425
AsuHPI	GGTGA	2 cut(s)	563, 1235
AsuII	TTCGAA	1 cut(s)	282
AvaI	CYCGRG	1 cut(s)	883
AvaII	GGWCC	2 cut(s)	374, 824
BaeGI	GKGCMC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	1138
BbsI	GAAGAC	1 cut(s)	906
BbvI	GCAGC	1 cut(s)	460
BccI	CCATC	8 cut(s)	36, 133, 290, 440, 684, 924, 1360, 1471
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	2 cut(s)	7, 1261
BcnI	CCSGG	1 cut(s)	425
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	3 cut(s)	158, 782, 1100
BfoI	RGCGCY	1 cut(s)	226
BisI	GCNGC	2 cut(s)	262, 474
BlpI	GCTNAGC	1 cut(s)	1015
BlsI	GCNGC	2 cut(s)	263, 475
Bme1390I	CCNGG	2 cut(s)	425, 639
Bme18I	GGWCC	2 cut(s)	374, 824
BmeT110I	CYCGRG	1 cut(s)	883
BmgT120I	GGNCC	2 cut(s)	374, 824
BmiI	GGNNCC	3 cut(s)	576, 936, 1140
BmrFI	CCNGG	2 cut(s)	425, 639
BmsI	GCATC	4 cut(s)	141, 310, 1460, 1492
BpiI	GAAGAC	1 cut(s)	906
Bpu10I	CCTNAGC	1 cut(s)	257
Bpu1102I	GCTNAGC	1 cut(s)	1015
Bpu14I	TTCGAA	1 cut(s)	282
BpuEI	CTTGAG	1 cut(s)	160
BpuMI	CCSGG	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	423, 637
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	1 cut(s)	1493
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 131, 268
BseBI	CCWGG	1 cut(s)	639
BseDI	CCNNGG	2 cut(s)	423, 637
BseGI	GGATG	2 cut(s)	251, 676
BseLI	CCNNNNNNNGG	3 cut(s)	73, 131, 268
BseMII	CTCAG	4 cut(s)	198, 335, 456, 957
BseRI	GAGGAG	1 cut(s)	1118
BseSI	GKGCMC	1 cut(s)	246
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	3 cut(s)	135, 1054, 1249
BshNI	GGYRCC	1 cut(s)	1138
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	3 cut(s)	269, 425, 611
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	3 cut(s)	73, 131, 268
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	135, 1054, 1249
BsoBI	CYCGRG	1 cut(s)	883
Bsp119I	TTCGAA	1 cut(s)	282
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	4 cut(s)	7, 607, 707, 1261
Bsp1720I	GCTNAGC	1 cut(s)	1015
BspACI	CCGC	1 cut(s)	262
BspANI	GGCC	3 cut(s)	135, 1054, 1249
BspCNI	CTCAG	4 cut(s)	199, 336, 455, 956
BspLI	GGNNCC	3 cut(s)	576, 936, 1140
BspPI	GGATC	2 cut(s)	602, 715
BspT104I	TTCGAA	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	1138
BssECI	CCNNGG	2 cut(s)	423, 637
BssMI	GATC	4 cut(s)	7, 607, 707, 1261
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	4 cut(s)	368, 812, 820, 976
Bst6I	CTCTTC	1 cut(s)	1325
BstBI	TTCGAA	1 cut(s)	282
BstC8I	GCNNGC	3 cut(s)	266, 1028, 1247
BstDEI	CTNAG	6 cut(s)	207, 257, 344, 442, 943, 1015
BstF5I	GGATG	2 cut(s)	251, 676
BstH2I	RGCGCY	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	225
BstKTI	GATC	4 cut(s)	10, 610, 710, 1264
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	4 cut(s)	7, 607, 707, 1261
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 1430
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	2 cut(s)	423, 637
BstSLI	GKGCMC	1 cut(s)	246
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	906
BstXI	CCANNNNNNTGG	2 cut(s)	35, 1041
BsuRI	GGCC	3 cut(s)	135, 1054, 1249
BtgZI	GCGATG	1 cut(s)	618
BtsCI	GGATG	2 cut(s)	251, 676
BtsI	GCAGTG	1 cut(s)	973
BtsIMutI	CAGTG	3 cut(s)	204, 341, 973
Cac8I	GCNNGC	3 cut(s)	266, 1028, 1247
CfoI	GCGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	374, 824
CseI	GACGC	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	614, 1139
CspCI	CAANNNNNGTGG	2 cut(s)	816, 851
CviAII	CATG	7 cut(s)	73, 104, 309, 532, 703, 773, 1322
CviQI	GTAC	2 cut(s)	614, 1139
DdeI	CTNAG	6 cut(s)	207, 257, 344, 442, 943, 1015
DpnI	GATC	4 cut(s)	9, 609, 709, 1263
DpnII	GATC	4 cut(s)	7, 607, 707, 1261
DraIII	CACNNNGTG	2 cut(s)	311, 347
Eam1104I	CTCTTC	1 cut(s)	1325
EarI	CTCTTC	1 cut(s)	1325
Eco147I	AGGCCT	1 cut(s)	1054
Eco32I	GATATC	1 cut(s)	667
Eco47I	GGWCC	2 cut(s)	374, 824
Eco88I	CYCGRG	1 cut(s)	883
EcoRI	GAATTC	1 cut(s)	1201
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	667
EcoT22I	ATGCAT	1 cut(s)	1405
FaeI	CATG	7 cut(s)	76, 107, 312, 535, 706, 776, 1325
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	7 cut(s)	72, 103, 308, 531, 702, 772, 1321
FbaI	TGATCA	2 cut(s)	7, 1261
Fnu4HI	GCNGC	2 cut(s)	262, 474
FokI	GGATG	2 cut(s)	238, 663
Fsp4HI	GCNGC	2 cut(s)	262, 474
FspBI	CTAG	3 cut(s)	158, 782, 1100
GlaI	GCGC	1 cut(s)	224
GluI	GCNGC	2 cut(s)	262, 474
HaeII	RGCGCY	1 cut(s)	226
HaeIII	GGCC	3 cut(s)	135, 1054, 1249
HapII	CCGG	3 cut(s)	269, 425, 611
HgaI	GACGC	1 cut(s)	794
HhaI	GCGC	1 cut(s)	225
Hin1II	CATG	7 cut(s)	76, 107, 312, 535, 706, 776, 1325
Hin6I	GCGC	1 cut(s)	223
HinP1I	GCGC	1 cut(s)	223
HincII	GTYRAC	2 cut(s)	61, 202
HindII	GTYRAC	2 cut(s)	61, 202
HinfI	GANTC	3 cut(s)	350, 1073, 1186
HpaI	GTTAAC	1 cut(s)	61
HpaII	CCGG	3 cut(s)	269, 425, 611
HphI	GGTGA	2 cut(s)	563, 1235
Hpy166II	GTNNAC	6 cut(s)	61, 202, 554, 827, 958, 1292
Hpy188I	TCNGA	5 cut(s)	12, 415, 445, 712, 1185
Hpy188III	TCNNGA	4 cut(s)	237, 494, 559, 1100
Hpy8I	GTNNAC	6 cut(s)	61, 202, 554, 827, 958, 1292
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	6 cut(s)	57, 766, 1364, 1372, 1378, 1414
HpyCH4III	ACNGT	4 cut(s)	368, 812, 820, 976
HpyCH4IV	ACGT	2 cut(s)	333, 1294
HpyCH4V	TGCA	6 cut(s)	154, 323, 544, 740, 843, 1403
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 1430
HpyF3I	CTNAG	6 cut(s)	207, 257, 344, 442, 943, 1015
HpySE526I	ACGT	2 cut(s)	333, 1294
Hsp92II	CATG	7 cut(s)	76, 107, 312, 535, 706, 776, 1325
HspAI	GCGC	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	1142
Ksp22I	TGATCA	2 cut(s)	7, 1261
KspAI	GTTAAC	1 cut(s)	61
Kzo9I	GATC	4 cut(s)	7, 607, 707, 1261
LmnI	GCTCC	4 cut(s)	171, 580, 1448, 1480
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	4 cut(s)	141, 310, 1460, 1492
MaeI	CTAG	3 cut(s)	158, 782, 1100
MaeII	ACGT	2 cut(s)	333, 1294
MaeIII	GTNAC	5 cut(s)	311, 536, 812, 873, 970
MalI	GATC	4 cut(s)	9, 609, 709, 1263
MboI	GATC	4 cut(s)	7, 607, 707, 1261
MboII	GAAGA	5 cut(s)	726, 739, 911, 1342, 1429
MfeI	CAATTG	3 cut(s)	627, 1273, 1425
MhlI	GDGCHC	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	1180
MmeI	TCCRAC	2 cut(s)	1178, 1191
MnlI	CCTC	9 cut(s)	111, 233, 459, 490, 1096, 1099, 1219, 1306, 1407
Mph1103I	ATGCAT	1 cut(s)	1405
MseI	TTAA	4 cut(s)	60, 213, 1356, 1491
MslI	CAYNNNNRTG	3 cut(s)	681, 1039, 1408
MspI	CCGG	3 cut(s)	269, 425, 611
MspR9I	CCNGG	2 cut(s)	425, 639
MunI	CAATTG	3 cut(s)	627, 1273, 1425
MvaI	CCWGG	1 cut(s)	639
MwoI	GCNNNNNNNGC	2 cut(s)	141, 1430
NciI	CCSGG	1 cut(s)	425
NdeII	GATC	4 cut(s)	7, 607, 707, 1261
NlaIII	CATG	7 cut(s)	76, 107, 312, 535, 706, 776, 1325
NlaIV	GGNNCC	3 cut(s)	576, 936, 1140
NmuCI	GTSAC	3 cut(s)	311, 873, 970
NsiI	ATGCAT	1 cut(s)	1405
NspV	TTCGAA	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	1054
PfeI	GAWTC	2 cut(s)	350, 1073
PkrI	GCNGC	2 cut(s)	263, 475
PleI	GAGTC	1 cut(s)	1180
PpsI	GAGTC	1 cut(s)	1180
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	3 cut(s)	576, 936, 1140
PspPI	GGNCC	2 cut(s)	374, 824
RsaI	GTAC	2 cut(s)	615, 1140
RsaNI	GTAC	2 cut(s)	614, 1139
RseI	CAYNNNNRTG	3 cut(s)	681, 1039, 1408
SaqAI	TTAA	4 cut(s)	60, 213, 1356, 1491
SatI	GCNGC	2 cut(s)	262, 474
Sau3AI	GATC	4 cut(s)	7, 607, 707, 1261
Sau96I	GGNCC	2 cut(s)	374, 824
SchI	GAGTC	1 cut(s)	1180
ScrFI	CCNGG	2 cut(s)	425, 639
SduI	GDGCHC	1 cut(s)	246
SfaNI	GCATC	4 cut(s)	141, 310, 1460, 1492
SfuI	TTCGAA	1 cut(s)	282
SinI	GGWCC	2 cut(s)	374, 824
SmiMI	CAYNNNNRTG	3 cut(s)	681, 1039, 1408
SmlI	CTYRAG	1 cut(s)	175
SmoI	CTYRAG	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	1054
SsiI	CCGC	1 cut(s)	262
SspMI	CTAG	3 cut(s)	158, 782, 1100
StuI	AGGCCT	1 cut(s)	1054
StyD4I	CCNGG	2 cut(s)	423, 637
TaaI	ACNGT	4 cut(s)	368, 812, 820, 976
TaiI	ACGT	2 cut(s)	336, 1297
TaqI	TCGA	4 cut(s)	236, 282, 696, 759
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	2 cut(s)	350, 1073
Tru1I	TTAA	4 cut(s)	60, 213, 1356, 1491
Tru9I	TTAA	4 cut(s)	60, 213, 1356, 1491
TscAI	CASTG	3 cut(s)	211, 348, 973
TseFI	GTSAC	3 cut(s)	311, 873, 970
TseI	GCWGC	1 cut(s)	473
Tsp45I	GTSAC	3 cut(s)	311, 873, 970
TspDTI	ATGAA	5 cut(s)	520, 691, 699, 789, 1107
TspRI	CASTG	3 cut(s)	211, 348, 973
VpaK11BI	GGWCC	2 cut(s)	374, 824
XapI	RAATTY	4 cut(s)	764, 1001, 1094, 1201
XbaI	TCTAGA	1 cut(s)	1099
XspI	CTAG	3 cut(s)	158, 782, 1100
Zsp2I	ATGCAT	1 cut(s)	1405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.