Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002418.1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

5402 .. 8041

Gene Structure 2640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002418.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgaagattccgacgatgaattccgatcccgatcagaacctggctctgatgccatataaagatacaacacaagatatcccggctttatgtgactccactaggaaaacatgtctaggccctttcaaggagctggtgactaagctcaattcctcacctgaagtgccacagattacttgtatagtttctgatggtctcacgggatttgggagggaagttgctaaggaactagggattcctgaggttcagttttggactgctactgcttgtggcttcgtggcgtacctgcaatatagcgaactcgtcaaacgaggcattgtgccatttaaagatgaaaatttcatgcaagatggtacactcgacaagccaattgattggatcccaggcgtgaagaatatgaggctcaaggacatcccttgctttatcagagtcactgatgtcaatgacataatgttcgacttccagggaaccgaagcacaaaactgtttaaaatcctctgcaatcatcctcaacacgtttgacgaatttgagcacgatgtgttagaagaaatcttagccatgtttcccaacatttacacaataggtccactttctttgcttggtaggcacgtgcttgaaaacaaattggtcaagtccctcagctcaggcttatggaaagaggatgcaaaatgcctcgaatggcttgacaaacagaaacccgattcagttgtatatgtgaattatgggagcataactatgatgacagaccaacatttagaagaatttacatgggggcttgcaaatagcaagcaccattttttgtggattgttaggcctgatgtggagcaagttctagcacatccatcagtcggggtttttctaactcattgtggttggaattctactattgaatctatatcagagggtgtgcctgtaatttgctggcctttctttgctgagcaacagacgaattgtcgtttcctgtgtaccaattggggaattggtatggaggtaaacaatgatgttaaacgcgatgagattgaagtgcttgtcaaggaaatgctggaaggggaaaaaggcatgaagatgaggcaaaaggcaaaggaatggaaaaagaaagcaattgaagctactgctattggaggatcgtcttacaataattttgacaaattgattatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

385

Amino Acids

43.62

Weight (kDa)

5.07

Isoelectric Point (pI)

33.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	291
AccII	CGCG	1 cut(s)	1008
AclWI	GGATC	4 cut(s)	20, 370, 383, 1129
AcsI	RAATTY	5 cut(s)	19, 334, 521, 758, 874
AcuI	CTGAAG	1 cut(s)	177
AcvI	CACGTG	1 cut(s)	607
AdeI	CACNNNGTG	1 cut(s)	535
AfaI	GTAC	3 cut(s)	281, 352, 964
AfiI	CCNNNNNNNGG	2 cut(s)	124, 845
AflIII	ACRYGT	2 cut(s)	107, 510
AgsI	TTSAA	5 cut(s)	124, 614, 887, 1019, 1103
AhdI	GACNNNNNGTC	1 cut(s)	948
AjnI	CCWGG	3 cut(s)	39, 379, 459
AluBI	AGCT	4 cut(s)	130, 142, 639, 1106
AluI	AGCT	4 cut(s)	130, 142, 639, 1106
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	4 cut(s)	20, 370, 383, 1129
AlwNI	CAGNNNCTG	1 cut(s)	40
AoxI	GGCC	3 cut(s)	115, 809, 920
ApoI	RAATTY	5 cut(s)	19, 334, 521, 758, 874
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AspS9I	GGNCC	2 cut(s)	116, 581
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	144, 145
AvaII	GGWCC	1 cut(s)	581
AxyI	CCTNAGG	1 cut(s)	237
BamHI	GGATCC	1 cut(s)	375
BbrPI	CACGTG	1 cut(s)	607
Bbv12I	GWGCWC	1 cut(s)	531
BbvCI	CCTCAGC	1 cut(s)	635
BccI	CCATC	3 cut(s)	182, 341, 847
BciT130I	CCWGG	3 cut(s)	41, 381, 461
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	4 cut(s)	99, 113, 227, 830
BfuAI	ACCTGC	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	933
Bme1390I	CCNGG	4 cut(s)	41, 80, 381, 461
Bme18I	GGWCC	1 cut(s)	581
BmeRI	GACNNNNNGTC	1 cut(s)	948
BmgT120I	GGNCC	2 cut(s)	116, 581
BmiI	GGNNCC	2 cut(s)	377, 466
BmrFI	CCNGG	4 cut(s)	41, 80, 381, 461
BmsI	GCATC	2 cut(s)	39, 649
Bpu10I	CCTNAGC	3 cut(s)	219, 635, 640
Bpu1102I	GCTNAGC	1 cut(s)	933
BpuEI	CTTGAG	1 cut(s)	386
BpuMI	CCSGG	1 cut(s)	80
BsaAI	YACGTR	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	30
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	379, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	124, 845
Bse21I	CCTNAGG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	30
BseBI	CCWGG	3 cut(s)	41, 381, 461
BseDI	CCNNGG	2 cut(s)	379, 460
BseGI	GGATG	4 cut(s)	408, 501, 664, 835
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	124, 845
BseMII	CTCAG	4 cut(s)	228, 649, 654, 924
Bsh1236I	CGCG	1 cut(s)	1008
BshFI	GGCC	3 cut(s)	117, 811, 922
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	616
BslI	CCNNNNNNNGG	2 cut(s)	124, 845
BsmAI	GTCTC	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	616
BsnI	GGCC	3 cut(s)	117, 811, 922
Bso31I	GGTCTC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	25, 31, 375, 1121
Bsp1720I	GCTNAGC	1 cut(s)	933
BspANI	GGCC	3 cut(s)	117, 811, 922
BspCNI	CTCAG	4 cut(s)	229, 648, 653, 925
BspFNI	CGCG	1 cut(s)	1008
BspLI	GGNNCC	2 cut(s)	377, 466
BspMI	ACCTGC	1 cut(s)	291
BspPI	GGATC	4 cut(s)	20, 370, 383, 1129
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	2 cut(s)	379, 460
BssMI	GATC	4 cut(s)	25, 31, 375, 1121
Bst2UI	CCWGG	3 cut(s)	41, 381, 461
Bst4CI	ACNGT	1 cut(s)	482
BstBAI	YACGTR	1 cut(s)	607
BstC8I	GCNNGC	3 cut(s)	774, 785, 920
BstDEI	CTNAG	7 cut(s)	138, 219, 237, 550, 635, 640, 933
BstF5I	GGATG	4 cut(s)	408, 501, 664, 835
BstFNI	CGCG	1 cut(s)	1008
BstKTI	GATC	4 cut(s)	28, 34, 378, 1124
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	4 cut(s)	25, 31, 375, 1121
BstMWI	GCNNNNNNNGC	2 cut(s)	601, 1103
BstNI	CCWGG	3 cut(s)	41, 381, 461
BstNSI	RCATGY	1 cut(s)	111
BstSCI	CCNGG	4 cut(s)	39, 78, 379, 459
BstUI	CGCG	1 cut(s)	1008
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	3 cut(s)	117, 811, 922
BtgZI	GCGATG	1 cut(s)	1023
BtsCI	GGATG	4 cut(s)	408, 501, 664, 835
BtsIMutI	CAGTG	1 cut(s)	429
BveI	ACCTGC	1 cut(s)	291
Cac8I	GCNNGC	3 cut(s)	774, 785, 920
CaiI	CAGNNNCTG	1 cut(s)	40
Cfr13I	GGNCC	2 cut(s)	116, 581
Csp6I	GTAC	3 cut(s)	280, 351, 963
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	5 cut(s)	108, 340, 556, 765, 1057
CviQI	GTAC	3 cut(s)	280, 351, 963
DdeI	CTNAG	7 cut(s)	138, 219, 237, 550, 635, 640, 933
DpnI	GATC	4 cut(s)	27, 33, 377, 1123
DpnII	GATC	4 cut(s)	25, 31, 375, 1121
DraI	TTTAAA	2 cut(s)	325, 486
DraIII	CACNNNGTG	1 cut(s)	535
DriI	GACNNNNNGTC	1 cut(s)	948
Eam1105I	GACNNNNNGTC	1 cut(s)	948
Eco147I	AGGCCT	1 cut(s)	811
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	76
Eco47I	GGWCC	1 cut(s)	581
Eco57I	CTGAAG	1 cut(s)	177
Eco72I	CACGTG	1 cut(s)	607
Eco81I	CCTNAGG	1 cut(s)	237
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRI	GAATTC	2 cut(s)	19, 874
EcoRII	CCWGG	3 cut(s)	39, 379, 459
EcoRV	GATATC	1 cut(s)	76
FaeI	CATG	5 cut(s)	111, 343, 559, 768, 1060
FaqI	GGGAC	1 cut(s)	616
FatI	CATG	5 cut(s)	107, 339, 555, 764, 1056
FokI	GGATG	4 cut(s)	395, 488, 671, 822
FspBI	CTAG	4 cut(s)	99, 113, 227, 830
HaeIII	GGCC	3 cut(s)	117, 811, 922
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	5 cut(s)	111, 343, 559, 768, 1060
HinfI	GANTC	6 cut(s)	7, 92, 232, 426, 698, 887
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	2 cut(s)	144, 145
Hpy166II	GTNNAC	4 cut(s)	353, 584, 963, 991
Hpy188I	TCNGA	7 cut(s)	12, 25, 36, 48, 187, 425, 898
Hpy188III	TCNNGA	2 cut(s)	29, 236
Hpy8I	GTNNAC	4 cut(s)	353, 584, 963, 991
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	1037
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4IV	ACGT	2 cut(s)	512, 606
HpyCH4V	TGCA	5 cut(s)	286, 343, 497, 662, 776
HpyF10VI	GCNNNNNNNGC	2 cut(s)	601, 1103
HpyF3I	CTNAG	7 cut(s)	138, 219, 237, 550, 635, 640, 933
HpySE526I	ACGT	2 cut(s)	512, 606
Hsp92II	CATG	5 cut(s)	111, 343, 559, 768, 1060
Kzo9I	GATC	4 cut(s)	25, 31, 375, 1121
LmnI	GCTCC	3 cut(s)	127, 723, 820
LweI	GCATC	2 cut(s)	39, 649
MaeI	CTAG	4 cut(s)	99, 113, 227, 830
MaeII	ACGT	2 cut(s)	512, 606
MaeIII	GTNAC	3 cut(s)	89, 133, 427
MalI	GATC	4 cut(s)	27, 33, 377, 1123
MboI	GATC	4 cut(s)	25, 31, 375, 1121
MboII	GAAGA	5 cut(s)	16, 400, 554, 767, 1072
MfeI	CAATTG	3 cut(s)	366, 967, 1098
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	1 cut(s)	531
MlyI	GAGTC	2 cut(s)	86, 435
MmeI	TCCRAC	2 cut(s)	35, 851
MseI	TTAA	4 cut(s)	324, 485, 1002, 1156
MslI	CAYNNNNRTG	2 cut(s)	731, 1061
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	4 cut(s)	41, 80, 381, 461
MunI	CAATTG	3 cut(s)	366, 967, 1098
MvaI	CCWGG	3 cut(s)	41, 381, 461
MvnI	CGCG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	2 cut(s)	601, 1103
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	4 cut(s)	25, 31, 375, 1121
NlaIII	CATG	5 cut(s)	111, 343, 559, 768, 1060
NlaIV	GGNNCC	2 cut(s)	377, 466
NmuCI	GTSAC	3 cut(s)	89, 133, 427
NspI	RCATGY	1 cut(s)	111
PceI	AGGCCT	1 cut(s)	811
PciI	ACATGT	1 cut(s)	107
PfeI	GAWTC	4 cut(s)	7, 232, 698, 887
PleI	GAGTC	2 cut(s)	86, 434
PmaCI	CACGTG	1 cut(s)	607
PmlI	CACGTG	1 cut(s)	607
PpsI	GAGTC	2 cut(s)	86, 434
Ppu21I	YACGTR	1 cut(s)	607
PscI	ACATGT	1 cut(s)	107
Psp6I	CCWGG	3 cut(s)	39, 379, 459
PspCI	CACGTG	1 cut(s)	607
PspGI	CCWGG	3 cut(s)	39, 379, 459
PspN4I	GGNNCC	2 cut(s)	377, 466
PspPI	GGNCC	2 cut(s)	116, 581
PstNI	CAGNNNCTG	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	375
RsaI	GTAC	3 cut(s)	281, 352, 964
RsaNI	GTAC	3 cut(s)	280, 351, 963
RseI	CAYNNNNRTG	2 cut(s)	731, 1061
SaqAI	TTAA	4 cut(s)	324, 485, 1002, 1156
Sau3AI	GATC	4 cut(s)	25, 31, 375, 1121
Sau96I	GGNCC	2 cut(s)	116, 581
SchI	GAGTC	2 cut(s)	86, 435
ScrFI	CCNGG	4 cut(s)	41, 80, 381, 461
SduI	GDGCHC	1 cut(s)	531
SfaNI	GCATC	2 cut(s)	39, 649
SinI	GGWCC	1 cut(s)	581
SmiMI	CAYNNNNRTG	2 cut(s)	731, 1061
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
SseBI	AGGCCT	1 cut(s)	811
SspMI	CTAG	4 cut(s)	99, 113, 227, 830
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	4 cut(s)	39, 78, 379, 459
TaaI	ACNGT	1 cut(s)	482
TaiI	ACGT	2 cut(s)	515, 609
TaqI	TCGA	3 cut(s)	357, 453, 672
TfiI	GAWTC	4 cut(s)	7, 232, 698, 887
Tru1I	TTAA	4 cut(s)	324, 485, 1002, 1156
Tru9I	TTAA	4 cut(s)	324, 485, 1002, 1156
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	3 cut(s)	89, 133, 427
Tsp45I	GTSAC	3 cut(s)	89, 133, 427
TspDTI	ATGAA	5 cut(s)	17, 32, 328, 345, 1073
TspRI	CASTG	1 cut(s)	436
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	5 cut(s)	19, 334, 521, 758, 874
XceI	RCATGY	1 cut(s)	111
XspI	CTAG	4 cut(s)	99, 113, 227, 830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.