Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Forward (+)

24625012 .. 24626699

Gene Structure 1688 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGTTGAAACTGAAACCAAAACACAACCTCATGTGGTTTGTGTTCCATACCCATCACAAGGCCATATTAGCCCTATGATGCAATTAGCCAAGCTCCTAAACTCAAGAGGCTTCCACATAACCTTTGTCAACACTGAGTTTAATCACAAGCGCTTAATCAGGTCCAGAGGGCACACATCATCCCTTTGCCGCCTGCCGGATTTTCGGTTCGAAACCATACCAGATGGACTGCCACCATGTGACAAAGATGCAACCCAAGATGTTCCAGCACTGAGTGAATCCACCAGAACAAACTGTCTTGGTCCATTCAAAGAGCTACTAATCAAGCTTAACAAGTTGTCCGAAGTGCCCCCGGTTAGTTGCGTAATCTCAGATGGGGTTATGGGTTTTGGGAGGGAAGCTGCTGTGGAATTGGGTATTCTAGAGGTTCAGTTTTGGACTGCCTCTGCTTGTGGCTTCATGGGTTACTTGCAGTATGGTGAACTCCTGAAAAGAGGAATGGCTCCGTTCAAAGATAAAGAATATAACAGCGATGATCCGGTACTCAACACACCAATTGATTTCCCAGGAGTGAAAAATGCTACTCTCAAAGACATCCCTTACCATCCTAATGAAATAATGTTCGATTTCATGGGATCAGAAGCACAGAACTGCTTGAAATCTTCTGCAATTATCTTCAACACCTTCGACGAATTTGAACATGAAGTGCTAGACGCAATCTCATCTACTATCCCCAACATTTACACAGTAGGTCCACTTTCTTTGCTATGCAGACATATACCAACTGAAACCCCAATCAAGTCACTCAACCCGAGCTTATGGAAAGAAGACCCAAAATTACTTGAATGGCTTGATAGATGGGAACCAAACTCAGTTGTGTATGTGAACTATGGCAGTGTGACTGTGATGACAGACCAGCATTTACAAGAATTTGCTTGGGGCTTAGCAAATAGCAAGCACCCATTTTTGTGGGTAGTAAGGCCTGATGTGGTAAAGAGTGAATCTGTAATCTTACCAGATGAATTTCTTGAGGAGGTCAAGGATAGGGGATATATAGCAAGTTGGGTACCGCAAGAACAAGTGTTGGGGCATAAATCAGTTGGGGTTTTTCTGACTCATTGTGGTTGGAATTCTATGTTGGAAAGTGTAGGTGAGGGTGTGCCTGTGATTTGCTGGCCTTTCTTTGCTGATCAACAAACCAATTGTGGATTTGCTTGTGGACGTTGGAGCATTGGATTGGAGGTCAAGCATGATGTGAAGAGATGTGAAATTGAAGGAGTTGTTAAGGAAATGATGGAAGGGGAGAAGGGGAAGGAGTTGAAGCAAAATGCATTGAAATGGAGGAAGAAGGCAATTGAAGCTACTGATATTGGTGGAGCATCTTATGGTAATTTTGATAGAATGATGGAGCATCTTATTAAAAAGGTGGAGATTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

480

Amino Acids

53.95

Weight (kDa)

5.47

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	12 - 138	1.7e-08	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	290 - 439	9.6e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1066
AccB1I	GGYRCC	1 cut(s)	1066
AciI	CCGC	2 cut(s)	190, 1070
AclWI	GGATC	2 cut(s)	530, 643
AcsI	RAATTY	4 cut(s)	692, 929, 1022, 1129
AdeI	CACNNNGTG	2 cut(s)	239, 275
AfaI	GTAC	2 cut(s)	543, 1068
AfeI	AGCGCT	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	59, 196
AjnI	CCWGG	1 cut(s)	565
AjuI	GAANNNNNNNTTGG	2 cut(s)	1121, 1153
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	94, 316, 328, 401, 816, 1361
AluI	AGCT	6 cut(s)	94, 316, 328, 401, 816, 1361
AlwI	GGATC	2 cut(s)	530, 643
Ama87I	CYCGRG	1 cut(s)	811
Aor51HI	AGCGCT	1 cut(s)	152
AoxI	GGCC	3 cut(s)	61, 980, 1175
ApeKI	GCWGC	1 cut(s)	401
ApoI	RAATTY	4 cut(s)	692, 929, 1022, 1129
Asp718I	GGTACC	1 cut(s)	1066
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	162, 302, 752
AsuC2I	CCSGG	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	491, 1163
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	811
AvaII	GGWCC	3 cut(s)	162, 302, 752
BaeGI	GKGCMC	2 cut(s)	174, 351
BanI	GGYRCC	1 cut(s)	1066
BbsI	GAAGAC	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	388
BccI	CCATC	7 cut(s)	61, 218, 368, 612, 852, 1288, 1399
BciT130I	CCWGG	1 cut(s)	567
BclI	TGATCA	1 cut(s)	1189
BcnI	CCSGG	1 cut(s)	353
BfaI	CTAG	2 cut(s)	422, 710
BfoI	RGCGCY	1 cut(s)	154
BisI	GCNGC	2 cut(s)	190, 402
BlpI	GCTNAGC	1 cut(s)	943
BlsI	GCNGC	2 cut(s)	191, 403
Bme1390I	CCNGG	2 cut(s)	353, 567
Bme18I	GGWCC	3 cut(s)	162, 302, 752
BmeT110I	CYCGRG	1 cut(s)	811
BmgT120I	GGNCC	3 cut(s)	162, 302, 752
BmiI	GGNNCC	3 cut(s)	504, 864, 1068
BmrFI	CCNGG	2 cut(s)	353, 567
BmsI	GCATC	4 cut(s)	69, 238, 1388, 1420
BpiI	GAAGAC	1 cut(s)	834
Bpu1102I	GCTNAGC	1 cut(s)	943
Bpu14I	TTCGAA	1 cut(s)	210
BpuEI	CTTGAG	2 cut(s)	88, 1049
BpuMI	CCSGG	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	351, 565
BsaWI	WCCGGW	1 cut(s)	538
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 196
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	2 cut(s)	351, 565
BseGI	GGATG	3 cut(s)	179, 594, 604
BseLI	CCNNNNNNNGG	2 cut(s)	59, 196
BseMII	CTCAG	4 cut(s)	126, 263, 384, 885
BseRI	GAGGAG	1 cut(s)	1046
BseSI	GKGCMC	2 cut(s)	174, 351
BseXI	GCAGC	1 cut(s)	388
BshFI	GGCC	3 cut(s)	63, 982, 1177
BshNI	GGYRCC	1 cut(s)	1066
BsiHKCI	CYCGRG	1 cut(s)	811
BsiSI	CCGG	3 cut(s)	197, 353, 539
BslI	CCNNNNNNNGG	2 cut(s)	59, 196
BsnI	GGCC	3 cut(s)	63, 982, 1177
BsoBI	CYCGRG	1 cut(s)	811
Bsp119I	TTCGAA	1 cut(s)	210
Bsp1286I	GDGCHC	2 cut(s)	174, 351
Bsp143I	GATC	3 cut(s)	535, 635, 1189
Bsp1720I	GCTNAGC	1 cut(s)	943
BspACI	CCGC	2 cut(s)	190, 1070
BspANI	GGCC	3 cut(s)	63, 982, 1177
BspCNI	CTCAG	4 cut(s)	127, 264, 383, 884
BspLI	GGNNCC	3 cut(s)	504, 864, 1068
BspPI	GGATC	2 cut(s)	530, 643
BspT104I	TTCGAA	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	1066
BssECI	CCNNGG	2 cut(s)	351, 565
BssMI	GATC	3 cut(s)	535, 635, 1189
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	3 cut(s)	296, 748, 904
Bst6I	CTCTTC	1 cut(s)	1253
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	194, 956, 1175
BstDEI	CTNAG	5 cut(s)	135, 272, 370, 871, 943
BstF5I	GGATG	3 cut(s)	179, 594, 604
BstH2I	RGCGCY	1 cut(s)	154
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	3 cut(s)	538, 638, 1192
BstMBI	GATC	3 cut(s)	535, 635, 1189
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 1358
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	351, 565
BstSLI	GKGCMC	2 cut(s)	174, 351
BstV1I	GCAGC	1 cut(s)	388
BstV2I	GAAGAC	1 cut(s)	834
BstXI	CCANNNNNNTGG	1 cut(s)	969
BsuRI	GGCC	3 cut(s)	63, 982, 1177
BtgZI	GCGATG	1 cut(s)	546
BtsCI	GGATG	3 cut(s)	179, 594, 604
BtsI	GCAGTG	1 cut(s)	901
BtsIMutI	CAGTG	3 cut(s)	132, 269, 901
Cac8I	GCNNGC	3 cut(s)	194, 956, 1175
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	162, 302, 752
CseI	GACGC	1 cut(s)	722
Csp6I	GTAC	2 cut(s)	542, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	744, 779
CviAII	CATG	6 cut(s)	32, 237, 460, 631, 701, 1250
CviQI	GTAC	2 cut(s)	542, 1067
DdeI	CTNAG	5 cut(s)	135, 272, 370, 871, 943
DpnI	GATC	3 cut(s)	537, 637, 1191
DpnII	GATC	3 cut(s)	535, 635, 1189
DraIII	CACNNNGTG	2 cut(s)	239, 275
Eam1104I	CTCTTC	1 cut(s)	1253
EarI	CTCTTC	1 cut(s)	1253
Eco147I	AGGCCT	1 cut(s)	982
Eco47I	GGWCC	3 cut(s)	162, 302, 752
Eco47III	AGCGCT	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	811
EcoRI	GAATTC	1 cut(s)	1129
EcoRII	CCWGG	1 cut(s)	565
EcoT22I	ATGCAT	1 cut(s)	1333
FaeI	CATG	6 cut(s)	35, 240, 463, 634, 704, 1253
FatI	CATG	6 cut(s)	31, 236, 459, 630, 700, 1249
FbaI	TGATCA	1 cut(s)	1189
Fnu4HI	GCNGC	2 cut(s)	190, 402
FokI	GGATG	3 cut(s)	166, 581, 591
Fsp4HI	GCNGC	2 cut(s)	190, 402
FspBI	CTAG	2 cut(s)	422, 710
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	2 cut(s)	190, 402
HaeII	RGCGCY	1 cut(s)	154
HaeIII	GGCC	3 cut(s)	63, 982, 1177
HapII	CCGG	3 cut(s)	197, 353, 539
HgaI	GACGC	1 cut(s)	722
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	6 cut(s)	35, 240, 463, 634, 704, 1253
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	1 cut(s)	326
HinfI	GANTC	3 cut(s)	278, 1001, 1114
HpaII	CCGG	3 cut(s)	197, 353, 539
HphI	GGTGA	2 cut(s)	491, 1163
Hpy166II	GTNNAC	5 cut(s)	130, 482, 755, 886, 1220
Hpy188I	TCNGA	4 cut(s)	343, 373, 640, 1113
Hpy188III	TCNNGA	5 cut(s)	105, 165, 422, 487, 1028
Hpy8I	GTNNAC	5 cut(s)	130, 482, 755, 886, 1220
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	6 cut(s)	694, 1268, 1292, 1300, 1306, 1342
HpyCH4III	ACNGT	3 cut(s)	296, 748, 904
HpyCH4IV	ACGT	1 cut(s)	1222
HpyCH4V	TGCA	6 cut(s)	82, 251, 472, 668, 771, 1331
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 1358
HpyF3I	CTNAG	5 cut(s)	135, 272, 370, 871, 943
HpySE526I	ACGT	1 cut(s)	1222
Hsp92II	CATG	6 cut(s)	35, 240, 463, 634, 704, 1253
HspAI	GCGC	1 cut(s)	151
KpnI	GGTACC	1 cut(s)	1070
Ksp22I	TGATCA	1 cut(s)	1189
Kzo9I	GATC	3 cut(s)	535, 635, 1189
LmnI	GCTCC	5 cut(s)	99, 508, 1227, 1376, 1408
Lsp1109I	GCAGC	1 cut(s)	388
LweI	GCATC	4 cut(s)	69, 238, 1388, 1420
MaeI	CTAG	2 cut(s)	422, 710
MaeII	ACGT	1 cut(s)	1222
MaeIII	GTNAC	4 cut(s)	239, 464, 801, 898
MalI	GATC	3 cut(s)	537, 637, 1191
MboI	GATC	3 cut(s)	535, 635, 1189
MboII	GAAGA	5 cut(s)	654, 667, 839, 1270, 1357
MfeI	CAATTG	3 cut(s)	555, 1201, 1353
MhlI	GDGCHC	2 cut(s)	174, 351
MlyI	GAGTC	1 cut(s)	1108
MmeI	TCCRAC	3 cut(s)	1106, 1119, 1205
Mph1103I	ATGCAT	1 cut(s)	1333
MseI	TTAA	5 cut(s)	141, 155, 330, 1284, 1419
MslI	CAYNNNNRTG	3 cut(s)	609, 967, 1336
MspI	CCGG	3 cut(s)	197, 353, 539
MspR9I	CCNGG	2 cut(s)	353, 567
MunI	CAATTG	3 cut(s)	555, 1201, 1353
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	69, 1358
NciI	CCSGG	1 cut(s)	353
NdeII	GATC	3 cut(s)	535, 635, 1189
NlaIII	CATG	6 cut(s)	35, 240, 463, 634, 704, 1253
NlaIV	GGNNCC	3 cut(s)	504, 864, 1068
NmuCI	GTSAC	3 cut(s)	239, 801, 898
NsiI	ATGCAT	1 cut(s)	1333
NspV	TTCGAA	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	982
PfeI	GAWTC	2 cut(s)	278, 1001
PkrI	GCNGC	2 cut(s)	191, 403
PleI	GAGTC	1 cut(s)	1108
PpsI	GAGTC	1 cut(s)	1108
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	504, 864, 1068
PspPI	GGNCC	3 cut(s)	162, 302, 752
RsaI	GTAC	2 cut(s)	543, 1068
RsaNI	GTAC	2 cut(s)	542, 1067
RseI	CAYNNNNRTG	3 cut(s)	609, 967, 1336
SaqAI	TTAA	5 cut(s)	141, 155, 330, 1284, 1419
SatI	GCNGC	2 cut(s)	190, 402
Sau3AI	GATC	3 cut(s)	535, 635, 1189
Sau96I	GGNCC	3 cut(s)	162, 302, 752
SchI	GAGTC	1 cut(s)	1108
ScrFI	CCNGG	2 cut(s)	353, 567
SduI	GDGCHC	2 cut(s)	174, 351
SfaNI	GCATC	4 cut(s)	69, 238, 1388, 1420
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	3 cut(s)	162, 302, 752
SmiMI	CAYNNNNRTG	3 cut(s)	609, 967, 1336
SmlI	CTYRAG	2 cut(s)	103, 1028
SmoI	CTYRAG	2 cut(s)	103, 1028
SseBI	AGGCCT	1 cut(s)	982
SsiI	CCGC	2 cut(s)	190, 1070
SspMI	CTAG	2 cut(s)	422, 710
StuI	AGGCCT	1 cut(s)	982
StyD4I	CCNGG	2 cut(s)	351, 565
TaaI	ACNGT	3 cut(s)	296, 748, 904
TaiI	ACGT	1 cut(s)	1225
TaqI	TCGA	3 cut(s)	210, 624, 687
TauI	GCSGC	1 cut(s)	192
TfiI	GAWTC	2 cut(s)	278, 1001
Tru1I	TTAA	5 cut(s)	141, 155, 330, 1284, 1419
Tru9I	TTAA	5 cut(s)	141, 155, 330, 1284, 1419
TscAI	CASTG	3 cut(s)	139, 276, 901
TseFI	GTSAC	3 cut(s)	239, 801, 898
TseI	GCWGC	1 cut(s)	401
Tsp45I	GTSAC	3 cut(s)	239, 801, 898
TspDTI	ATGAA	5 cut(s)	448, 619, 627, 717, 1035
TspGWI	ACGGA	1 cut(s)	495
TspRI	CASTG	3 cut(s)	139, 276, 901
VpaK11BI	GGWCC	3 cut(s)	162, 302, 752
XapI	RAATTY	4 cut(s)	692, 929, 1022, 1129
XbaI	TCTAGA	1 cut(s)	421
XspI	CTAG	2 cut(s)	422, 710
Zsp2I	ATGCAT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.