Rw2G018640

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Reverse (-)
24329551 .. 24332306
2756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G018640.1

Sequence Viewer

Length: 1380 bp
ATGGGTTCGACACAGTTAGGAGCCAAAGAACTGCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGCACTCCAGGGGATTCCGCATAACATTTGTCAACACTGAGTTCAACCACCGGCGTTTAATCCGATCCAGAGGTTCCGACTCTGTCAAGGGACTACCGGACTTCCAATTCGAGACCATACCAGACGGGTTGCCACCTTCAGATAAAGATGCAACTCAAGATGTCCCGGCTTTATGTGACTCCACCAGGAAAACATGTCTAGGCCCTTTTAAGGAGCTGTTGACTAAGCTCAATTCCTCATCTGAAGTGCCACAGATTACTTGTATAATTTCTGATGGTACCACGGGATTTGGGAGGGAAGTTGCTAAGGAACTAGGGATTCCTGAGGTGCAGCTTTGGACTGCTTCTGCTTGTGGCTTCATGGCGTACCTACAATACAGCGAACTTGTTAAACGAGGCATTGTTCCATTTAAAGATGAAAGTTTCATGCAAGATGGTACACTGGATAAGCCAATTGATTGGATCCCAGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTGATGTCAACGACATAATGTTCGACTTCTTGGGATCCGAAGCACAAAACTACTTGAAATCCTCTGCAATCATCCTCAACACGTTTGACGAATTTGAGCATGAAGTGTTGGAAGAAATCTCAGCCATGTTTCCTAACATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCACGTGCCTGAAAACAAATTGGTCAAGTCCCTCACCTCAGGCTTGTGGAAAGAAGATGCAAAATGCCTCGAATGGCTTGACAAACAGAAACCCGATTCGGTTGTATATGTGAATTATGGGAGCATAACTATGATGACAGATCAACATTTGAAAGAATTTGCATGGGGGCTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTTAGGCCTGATGTGGTAAAAGGGGATTCGGTTGTCTTGCCCGAAGAATTTTTCCAGGAGATTAAGGATAGGGGTTATATAGCAACTTGGTGTCCACAGGAGCAAGTGCTAGCACATCCATCAGTCGGGGTTTTTCTAACTCATTGTGGTTGGAATTCTACTATTGAAACTATATCAGCGGGTGTGCCTGTAATTTGCTGGCCTTTCTTTATTGAGCAACAGACGAATTGTCGTTTCCTGTTGCTTGTCAAGGAAATGCTGGAAGGGGAAAAAGGCATGAAGATGAGGCGAAAGGCAAAGGAATGGAAGAAGAAAGCAATAGCAGCTACTGACACCGGAGGATCATCGTACAATAATTTTGAAAGACTTATTAAGGAAGCTCTTCAATAA

Protein Analysis

459

Amino Acids

51.79

Weight (kDa)

6.05

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 71 4.9e-09 Glycosyltransferase, N-terminal domain
UDPGT PF00201 67 - 408 5.3e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 377
AccB1I GGYRCC 1 cut(s) 377
AciI CCGC 2 cut(s) 118, 1169
AclWI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1339
AcsI RAATTY 4 cut(s) 707, 944, 1037, 1144
AcuI CTGAAG 2 cut(s) 222, 363
AcvI CACGTG 1 cut(s) 793
AfaI GTAC 4 cut(s) 379, 467, 538, 1340
AfiI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
AflIII ACRYGT 2 cut(s) 293, 696
AgsI TTSAA 6 cut(s) 145, 673, 940, 1157, 1352, 1376
AhdI GACNNNNNGTC 1 cut(s) 1218
AjnI CCWGG 4 cut(s) 107, 284, 565, 1044
AluBI AGCT 7 cut(s) 97, 316, 328, 433, 603, 1316, 1370
AluI AGCT 7 cut(s) 97, 316, 328, 433, 603, 1316, 1370
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1339
AlwNI CAGNNNCTG 1 cut(s) 1319
AoxI GGCC 4 cut(s) 64, 301, 995, 1190
ApeKI GCWGC 2 cut(s) 430, 1313
ApoI RAATTY 4 cut(s) 707, 944, 1037, 1144
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 620, 652
Asp700I GAANNNNTTC 1 cut(s) 1371
Asp718I GGTACC 1 cut(s) 377
AspS9I GGNCC 2 cut(s) 302, 767
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 814
AsuNHI GCTAGC 1 cut(s) 1099
AvaII GGWCC 1 cut(s) 767
AxyI CCTNAGG 2 cut(s) 423, 826
BamHI GGATCC 2 cut(s) 561, 650
BanI GGYRCC 1 cut(s) 377
BbrPI CACGTG 1 cut(s) 793
BbvI GCAGC 2 cut(s) 442, 1325
BccI CCATC 3 cut(s) 368, 527, 1117
BciT130I CCWGG 4 cut(s) 109, 286, 567, 1046
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 4 cut(s) 299, 413, 600, 1100
BisI GCNGC 2 cut(s) 431, 1314
BlsI GCNGC 2 cut(s) 432, 1315
Bme1390I CCNGG 5 cut(s) 109, 266, 286, 567, 1046
Bme18I GGWCC 1 cut(s) 767
BmeRI GACNNNNNGTC 1 cut(s) 1218
BmgT120I GGNCC 2 cut(s) 302, 767
BmiI GGNNCC 5 cut(s) 22, 175, 379, 563, 652
BmrFI CCNGG 5 cut(s) 109, 266, 286, 567, 1046
BmsI GCATC 3 cut(s) 72, 238, 835
BmtI GCTAGC 1 cut(s) 1103
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 405
BpuEI CTTGAG 2 cut(s) 240, 572
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 793
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 3 cut(s) 108, 381, 565
BsaWI WCCGGW 2 cut(s) 196, 1325
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 310, 1115
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 2 cut(s) 423, 826
BseBI CCWGG 4 cut(s) 109, 286, 567, 1046
BseDI CCNNGG 3 cut(s) 108, 381, 565
BseGI GGATG 3 cut(s) 594, 687, 1105
BseLI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BseMII CTCAG 4 cut(s) 129, 414, 750, 840
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 2 cut(s) 442, 1325
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 2 cut(s) 86, 449
BshFI GGCC 4 cut(s) 66, 303, 997, 1192
BshNI GGYRCC 1 cut(s) 377
BsiSI CCGG 4 cut(s) 151, 197, 266, 1326
BslFI GGGAC 4 cut(s) 32, 204, 248, 802
BslI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 4 cut(s) 32, 204, 248, 802
BsnI GGCC 4 cut(s) 66, 303, 997, 1192
Bso31I GGTCTC 1 cut(s) 206
Bsp143I GATC 5 cut(s) 164, 561, 650, 928, 1331
BspACI CCGC 2 cut(s) 118, 1169
BspANI GGCC 4 cut(s) 66, 303, 997, 1192
BspCNI CTCAG 4 cut(s) 130, 415, 749, 839
BspLI GGNNCC 5 cut(s) 22, 175, 379, 563, 652
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1339
BspQI GCTCTTC 1 cut(s) 1377
BspT107I GGYRCC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 108, 381, 565
BssMI GATC 5 cut(s) 164, 561, 650, 928, 1331
Bst2UI CCWGG 4 cut(s) 109, 286, 567, 1046
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 1377
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 5 cut(s) 36, 960, 971, 1101, 1190
BstDEI CTNAG 6 cut(s) 138, 324, 405, 423, 736, 826
BstDSI CCRYGG 1 cut(s) 381
BstF5I GGATG 3 cut(s) 594, 687, 1105
BstKTI GATC 5 cut(s) 167, 564, 653, 931, 1334
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 5 cut(s) 164, 561, 650, 928, 1331
BstMWI GCNNNNNNNGC 2 cut(s) 787, 1313
BstNI CCWGG 4 cut(s) 109, 286, 567, 1046
BstNSI RCATGY 2 cut(s) 38, 297
BstSCI CCNGG 5 cut(s) 107, 264, 284, 565, 1044
BstV1I GCAGC 2 cut(s) 442, 1325
BstX2I RGATCY 2 cut(s) 561, 650
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 2 cut(s) 561, 650
Bsu36I CCTNAGG 2 cut(s) 423, 826
BsuRI GGCC 4 cut(s) 66, 303, 997, 1192
BtgI CCRYGG 1 cut(s) 381
BtsCI GGATG 3 cut(s) 594, 687, 1105
BtsIMutI CAGTG 3 cut(s) 135, 539, 615
Cac8I GCNNGC 5 cut(s) 36, 960, 971, 1101, 1190
CaiI CAGNNNCTG 1 cut(s) 1319
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 302, 767
Csp6I GTAC 4 cut(s) 378, 466, 537, 1339
CspCI CAANNNNNGTGG 4 cut(s) 370, 405, 759, 794
CviQI GTAC 4 cut(s) 378, 466, 537, 1339
DdeI CTNAG 6 cut(s) 138, 324, 405, 423, 736, 826
DpnI GATC 5 cut(s) 166, 563, 652, 930, 1333
DpnII GATC 5 cut(s) 164, 561, 650, 928, 1331
DraI TTTAAA 1 cut(s) 511
DriI GACNNNNNGTC 1 cut(s) 1218
Eam1104I CTCTTC 1 cut(s) 1377
Eam1105I GACNNNNNGTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1377
Eco147I AGGCCT 1 cut(s) 997
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 222, 363
Eco72I CACGTG 1 cut(s) 793
Eco81I CCTNAGG 2 cut(s) 423, 826
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 4 cut(s) 107, 284, 565, 1044
FaqI GGGAC 4 cut(s) 32, 204, 248, 802
FauI CCCGC 1 cut(s) 1162
Fnu4HI GCNGC 2 cut(s) 431, 1314
FokI GGATG 3 cut(s) 581, 674, 1092
Fsp4HI GCNGC 2 cut(s) 431, 1314
FspBI CTAG 4 cut(s) 299, 413, 600, 1100
GluI GCNGC 2 cut(s) 431, 1314
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 4 cut(s) 66, 303, 997, 1192
HapII CCGG 4 cut(s) 151, 197, 266, 1326
HincII GTYRAC 4 cut(s) 73, 133, 321, 625
HindII GTYRAC 4 cut(s) 73, 133, 321, 625
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 114, 179, 278, 418, 612, 884, 1016
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 151, 197, 266, 1326
HphI GGTGA 1 cut(s) 814
Hpy166II GTNNAC 7 cut(s) 73, 133, 321, 539, 625, 770, 1085
Hpy188I TCNGA 7 cut(s) 164, 178, 241, 343, 373, 611, 655
Hpy188III TCNNGA 4 cut(s) 168, 211, 257, 422
Hpy8I GTNNAC 7 cut(s) 73, 133, 321, 539, 625, 770, 1085
HpyAV CCTTC 2 cut(s) 246, 1247
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 698, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 1313
HpyF3I CTNAG 6 cut(s) 138, 324, 405, 423, 736, 826
HpySE526I ACGT 2 cut(s) 698, 792
KpnI GGTACC 1 cut(s) 381
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 164, 561, 650, 928, 1331
LguI GCTCTTC 1 cut(s) 1377
LmnI GCTCC 4 cut(s) 20, 313, 909, 1090
Lsp1109I GCAGC 2 cut(s) 442, 1325
LweI GCATC 3 cut(s) 72, 238, 835
MaeI CTAG 4 cut(s) 299, 413, 600, 1100
MaeII ACGT 2 cut(s) 698, 792
MaeIII GTNAC 2 cut(s) 275, 613
MalI GATC 5 cut(s) 166, 563, 652, 930, 1333
MboI GATC 5 cut(s) 164, 561, 650, 928, 1331
MboII GAAGA 8 cut(s) 586, 740, 854, 1046, 1282, 1309, 1312, 1364
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 2 cut(s) 561, 650
MlyI GAGTC 3 cut(s) 173, 272, 621
MmeI TCCRAC 3 cut(s) 201, 705, 1121
MroXI GAANNNNTTC 1 cut(s) 1371
MseI TTAA 7 cut(s) 72, 158, 309, 489, 510, 1053, 1362
MslI CAYNNNNRTG 2 cut(s) 917, 1271
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 4 cut(s) 151, 197, 266, 1326
MspR9I CCNGG 5 cut(s) 109, 266, 286, 567, 1046
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 4 cut(s) 109, 286, 567, 1046
MwoI GCNNNNNNNGC 2 cut(s) 787, 1313
NciI CCSGG 1 cut(s) 266
NdeII GATC 5 cut(s) 164, 561, 650, 928, 1331
NheI GCTAGC 1 cut(s) 1099
NlaIV GGNNCC 5 cut(s) 22, 175, 379, 563, 652
NmuCI GTSAC 2 cut(s) 275, 613
NspI RCATGY 2 cut(s) 38, 297
PaeI GCATGC 1 cut(s) 38
PceI AGGCCT 1 cut(s) 997
PciI ACATGT 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 1377
PdmI GAANNNNTTC 1 cut(s) 1371
PfeI GAWTC 4 cut(s) 114, 418, 884, 1016
PflFI GACNNNGTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 2 cut(s) 432, 1315
PleI GAGTC 3 cut(s) 173, 272, 620
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 3 cut(s) 173, 272, 620
Ppu21I YACGTR 1 cut(s) 793
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 4 cut(s) 107, 284, 565, 1044
PspCI CACGTG 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 4 cut(s) 107, 284, 565, 1044
PspN4I GGNNCC 5 cut(s) 22, 175, 379, 563, 652
PspPI GGNCC 2 cut(s) 302, 767
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 2 cut(s) 561, 650
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 4 cut(s) 379, 467, 538, 1340
RsaNI GTAC 4 cut(s) 378, 466, 537, 1339
RseI CAYNNNNRTG 2 cut(s) 917, 1271
SapI GCTCTTC 1 cut(s) 1377
SaqAI TTAA 7 cut(s) 72, 158, 309, 489, 510, 1053, 1362
SatI GCNGC 2 cut(s) 431, 1314
Sau3AI GATC 5 cut(s) 164, 561, 650, 928, 1331
Sau96I GGNCC 2 cut(s) 302, 767
SchI GAGTC 3 cut(s) 173, 272, 621
ScrFI CCNGG 5 cut(s) 109, 266, 286, 567, 1046
SfaNI GCATC 3 cut(s) 72, 238, 835
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 917, 1271
SmlI CTYRAG 2 cut(s) 255, 587
SmoI CTYRAG 2 cut(s) 255, 587
SphI GCATGC 1 cut(s) 38
SseBI AGGCCT 1 cut(s) 997
SsiI CCGC 2 cut(s) 118, 1169
SspMI CTAG 4 cut(s) 299, 413, 600, 1100
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 5 cut(s) 107, 264, 284, 565, 1044
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 701, 795
TaqI TCGA 4 cut(s) 8, 210, 639, 858
TfiI GAWTC 4 cut(s) 114, 418, 884, 1016
Tru1I TTAA 7 cut(s) 72, 158, 309, 489, 510, 1053, 1362
Tru9I TTAA 7 cut(s) 72, 158, 309, 489, 510, 1053, 1362
TscAI CASTG 3 cut(s) 142, 546, 622
TseFI GTSAC 2 cut(s) 275, 613
TseI GCWGC 2 cut(s) 430, 1313
Tsp45I GTSAC 2 cut(s) 275, 613
TspDTI ATGAA 6 cut(s) 448, 514, 531, 587, 732, 1283
TspRI CASTG 3 cut(s) 142, 546, 622
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 4 cut(s) 707, 944, 1037, 1144
XceI RCATGY 2 cut(s) 38, 297
XmnI GAANNNNTTC 1 cut(s) 1371
XspI CTAG 4 cut(s) 299, 413, 600, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.