Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002351.1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

293460 .. 294380

Gene Structure 921 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002351.1_g000078.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

atgcaagatggtacactcgacaagccaattgattggatcccaggcatgaagaatatgaggctcaaggacatccctagctttatcagagtcactgatgtcaatgacataatgttcgacttccagggaaccgaagctcaaaattgtttgaaatcctctgcaatcatcctcaacacgtttgacgaatttgagcatgatgtgttagaagaaatcttagccatgtttcccaacatttacacaataggtccacttgctttgcttggtaggcacgtgcttgaaaacaaattggtcaagtccctcagctcaggcttatggaaagaggatgcaaaatgccttgaatggcttgacaaacagaaacccgattcagttgtatatgtgaattatgggagcataactatgatgacagaccaacatttgaaagaatttgcatgggggcttgcaaatagcaagcaccattttttgtggattgttaggcctgatgtggtaaaaggggattcagttctcttgtccgaagaatttttcgaggagattaaggataggagttacatagcaagttggtgtccacaagagcaagttttagcacatccatcagtcggggtttttctaactcattgtggttggaattctactattgaatctatatcagagggtgtgcctgtaatttgctggcctttctttgctgagcaacagacgaattgtcgtttcctgtgtactgattggggaataggtatggaggtgaacaatgatgttaaacgcgacgagattaaagcgcttgttaaggaaatgctggaaggggaaaaaggcgtgaacatgaggcaaaaggcaaaggaatggaaaaagaaagcaattgaagctactgctattggaggatcatcttacaataattttgacaaattgattaaggaggctcttcatatggaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

306

Amino Acids

35.0

Weight (kDa)

5.15

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	753
AclWI	GGATC	3 cut(s)	31, 44, 874
AcsI	RAATTY	4 cut(s)	182, 419, 512, 619
AcvI	CACGTG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	13, 709
AfeI	AGCGCT	1 cut(s)	768
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	6 cut(s)	148, 275, 335, 415, 632, 848
AhdI	GACNNNNNGTC	1 cut(s)	693
AjnI	CCWGG	2 cut(s)	40, 120
AluBI	AGCT	4 cut(s)	78, 134, 300, 851
AluI	AGCT	4 cut(s)	78, 134, 300, 851
AlwI	GGATC	3 cut(s)	31, 44, 874
Aor51HI	AGCGCT	1 cut(s)	768
AoxI	GGCC	2 cut(s)	470, 665
ApoI	RAATTY	4 cut(s)	182, 419, 512, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspLEI	GCGC	1 cut(s)	769
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	745
AvaII	GGWCC	1 cut(s)	242
BamHI	GGATCC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	296
BccI	CCATC	2 cut(s)	2, 592
BciT130I	CCWGG	2 cut(s)	42, 122
BfaI	CTAG	1 cut(s)	75
BfoI	RGCGCY	1 cut(s)	770
BlpI	GCTNAGC	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	42, 122
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	38, 127
BmrFI	CCNGG	2 cut(s)	42, 122
BmsI	GCATC	1 cut(s)	310
Bpu10I	CCTNAGC	2 cut(s)	296, 301
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	47
BsaAI	YACGTR	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	40, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
BseBI	CCWGG	2 cut(s)	42, 122
BseDI	CCNNGG	2 cut(s)	40, 121
BseGI	GGATG	4 cut(s)	69, 162, 325, 580
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	3 cut(s)	310, 315, 669
BseRI	GAGGAG	1 cut(s)	536
Bsh1236I	CGCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	472, 667
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	472, 667
Bsp143I	GATC	2 cut(s)	36, 866
Bsp1720I	GCTNAGC	1 cut(s)	678
BspANI	GGCC	2 cut(s)	472, 667
BspCNI	CTCAG	3 cut(s)	309, 314, 670
BspFNI	CGCG	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	38, 127
BspPI	GGATC	3 cut(s)	31, 44, 874
BspQI	GCTCTTC	1 cut(s)	912
BssECI	CCNNGG	2 cut(s)	40, 121
BssMI	GATC	2 cut(s)	36, 866
Bst2UI	CCWGG	2 cut(s)	42, 122
Bst6I	CTCTTC	1 cut(s)	912
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	435, 446, 665
BstDEI	CTNAG	4 cut(s)	211, 296, 301, 678
BstF5I	GGATG	4 cut(s)	69, 162, 325, 580
BstFNI	CGCG	1 cut(s)	753
BstH2I	RGCGCY	1 cut(s)	770
BstHHI	GCGC	1 cut(s)	769
BstKTI	GATC	2 cut(s)	39, 869
BstMBI	GATC	2 cut(s)	36, 866
BstMWI	GCNNNNNNNGC	2 cut(s)	262, 848
BstNI	CCWGG	2 cut(s)	42, 122
BstSCI	CCNGG	2 cut(s)	40, 120
BstUI	CGCG	1 cut(s)	753
BstX2I	RGATCY	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	36
BsuRI	GGCC	2 cut(s)	472, 667
BtsCI	GGATG	4 cut(s)	69, 162, 325, 580
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	3 cut(s)	435, 446, 665
CfoI	GCGC	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	12, 708
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	5 cut(s)	46, 191, 217, 426, 808
CviQI	GTAC	2 cut(s)	12, 708
DdeI	CTNAG	4 cut(s)	211, 296, 301, 678
DpnI	GATC	2 cut(s)	38, 868
DpnII	GATC	2 cut(s)	36, 866
DriI	GACNNNNNGTC	1 cut(s)	693
Eam1104I	CTCTTC	1 cut(s)	912
Eam1105I	GACNNNNNGTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	912
Eco147I	AGGCCT	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	242
Eco47III	AGCGCT	1 cut(s)	768
Eco72I	CACGTG	1 cut(s)	268
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	40, 120
FaeI	CATG	5 cut(s)	49, 194, 220, 429, 811
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	5 cut(s)	45, 190, 216, 425, 807
FauNDI	CATATG	1 cut(s)	912
FokI	GGATG	4 cut(s)	56, 149, 332, 567
FspBI	CTAG	1 cut(s)	75
GlaI	GCGC	1 cut(s)	768
HaeII	RGCGCY	1 cut(s)	770
HaeIII	GGCC	2 cut(s)	472, 667
HhaI	GCGC	1 cut(s)	769
Hin1II	CATG	5 cut(s)	49, 194, 220, 429, 811
Hin6I	GCGC	1 cut(s)	767
HinP1I	GCGC	1 cut(s)	767
HinfI	GANTC	4 cut(s)	87, 359, 491, 632
HphI	GGTGA	1 cut(s)	745
Hpy166II	GTNNAC	6 cut(s)	14, 245, 560, 708, 736, 805
Hpy188I	TCNGA	3 cut(s)	86, 508, 643
Hpy8I	GTNNAC	6 cut(s)	14, 245, 560, 708, 736, 805
Hpy99I	CGWCG	1 cut(s)	758
HpyAV	CCTTC	1 cut(s)	782
HpyCH4IV	ACGT	2 cut(s)	173, 267
HpyCH4V	TGCA	5 cut(s)	4, 158, 323, 425, 437
HpyF10VI	GCNNNNNNNGC	2 cut(s)	262, 848
HpyF3I	CTNAG	4 cut(s)	211, 296, 301, 678
HpySE526I	ACGT	2 cut(s)	173, 267
Hsp92II	CATG	5 cut(s)	49, 194, 220, 429, 811
HspAI	GCGC	1 cut(s)	767
Kzo9I	GATC	2 cut(s)	36, 866
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	1 cut(s)	384
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	75
MaeII	ACGT	2 cut(s)	173, 267
MaeIII	GTNAC	2 cut(s)	88, 539
MalI	GATC	2 cut(s)	38, 868
MboI	GATC	2 cut(s)	36, 866
MboII	GAAGA	4 cut(s)	61, 215, 521, 899
MfeI	CAATTG	2 cut(s)	27, 843
MflI	RGATCY	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	596
MseI	TTAA	5 cut(s)	528, 747, 762, 774, 897
MslI	CAYNNNNRTG	1 cut(s)	392
MspR9I	CCNGG	2 cut(s)	42, 122
MunI	CAATTG	2 cut(s)	27, 843
MvaI	CCWGG	2 cut(s)	42, 122
MvnI	CGCG	1 cut(s)	753
MwoI	GCNNNNNNNGC	2 cut(s)	262, 848
NdeI	CATATG	1 cut(s)	912
NdeII	GATC	2 cut(s)	36, 866
NlaIII	CATG	5 cut(s)	49, 194, 220, 429, 811
NlaIV	GGNNCC	2 cut(s)	38, 127
NmuCI	GTSAC	1 cut(s)	88
PceI	AGGCCT	1 cut(s)	472
PciSI	GCTCTTC	1 cut(s)	912
PfeI	GAWTC	3 cut(s)	359, 491, 632
PleI	GAGTC	1 cut(s)	95
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	40, 120
PspCI	CACGTG	1 cut(s)	268
PspGI	CCWGG	2 cut(s)	40, 120
PspN4I	GGNNCC	2 cut(s)	38, 127
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	13, 709
RsaNI	GTAC	2 cut(s)	12, 708
RseI	CAYNNNNRTG	1 cut(s)	392
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	5 cut(s)	528, 747, 762, 774, 897
Sau3AI	GATC	2 cut(s)	36, 866
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	42, 122
SetI	ASST	9 cut(s)	80, 136, 176, 244, 270, 302, 727, 735, 853
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SseBI	AGGCCT	1 cut(s)	472
SspMI	CTAG	1 cut(s)	75
StuI	AGGCCT	1 cut(s)	472
StyD4I	CCNGG	2 cut(s)	40, 120
TaiI	ACGT	2 cut(s)	176, 270
TaqI	TCGA	3 cut(s)	18, 114, 519
TatI	WGTACW	1 cut(s)	707
TfiI	GAWTC	3 cut(s)	359, 491, 632
Tru1I	TTAA	5 cut(s)	528, 747, 762, 774, 897
Tru9I	TTAA	5 cut(s)	528, 747, 762, 774, 897
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	62, 899
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	4 cut(s)	182, 419, 512, 619
XspI	CTAG	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.