Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014256.1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

18777 .. 19538

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014256.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

atgcaagatggtacactcgacaagccaattgattggatcccaggcatgaagaatatgaggctcaaggacatccctagctttatcagagtcactgatgtcaatgacataatgttcgacttccagggaaccgaagcacaaaactgtttgaaatcctctgcaatcatcctcaacacgtttgacgaatttgagcatgaagtgttagaagaaatctcagccatgtttcccagcatttacacaataggtccacttgctttgcttggtaggcacgtgcctgaaaacaaattggtcaagtccctcacctcaggcttgtggaaagaagatgccaaatgcctcgaatggcttgacaaacagaaacccgattcggttgtatatgtgaattatgggagcataactatgatgacagatcaacatttgaaagaatttgcatgggggcttgcaaatagcaagcaccattttttgtggattgttagacctgatgtggtaaaagcggattcggttgtccagcccgaagaatttttcaaggagattaaggataggggttacttagcaagttggtgtccacaggagcaagtgctagcacatccatcagtcggggtttttctaactcattgtggttggaattctactattgaaactatatcagcgggtgtgcctgtaatttgctggcctttctttgctgagcaacagacgaattgtcgtttcctgtgtaccaattggggaattggtatggaggtaaacaatgatgttaaacgcaatcgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

253

Amino Acids

28.94

Weight (kDa)

5.27

Isoelectric Point (pI)

32.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	488, 644
AclWI	GGATC	2 cut(s)	31, 44
AcsI	RAATTY	4 cut(s)	182, 419, 512, 619
AcvI	CACGTG	1 cut(s)	268
AfaI	GTAC	2 cut(s)	13, 709
AfiI	CCNNNNNNNGG	1 cut(s)	590
AflIII	ACRYGT	1 cut(s)	171
AgsI	TTSAA	4 cut(s)	148, 415, 520, 632
AhdI	GACNNNNNGTC	1 cut(s)	693
AjnI	CCWGG	2 cut(s)	40, 120
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
AlwI	GGATC	2 cut(s)	31, 44
AoxI	GGCC	1 cut(s)	665
ApoI	RAATTY	4 cut(s)	182, 419, 512, 619
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AspS9I	GGNCC	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	289
AsuNHI	GCTAGC	1 cut(s)	574
AvaII	GGWCC	1 cut(s)	242
AxyI	CCTNAGG	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	36
BbrPI	CACGTG	1 cut(s)	268
BccI	CCATC	2 cut(s)	2, 592
BciT130I	CCWGG	2 cut(s)	42, 122
BfaI	CTAG	2 cut(s)	75, 575
BlpI	GCTNAGC	1 cut(s)	678
Bme1390I	CCNGG	2 cut(s)	42, 122
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	693
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	38, 127
BmrFI	CCNGG	2 cut(s)	42, 122
BmsI	GCATC	1 cut(s)	310
BmtI	GCTAGC	1 cut(s)	578
Bpu1102I	GCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	47
Bsa29I	ATCGAT	1 cut(s)	757
BsaAI	YACGTR	1 cut(s)	268
BsaJI	CCNNGG	2 cut(s)	40, 121
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
Bse21I	CCTNAGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	42, 122
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	40, 121
BseGI	GGATG	3 cut(s)	69, 162, 580
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	3 cut(s)	225, 315, 669
BseYI	CCCAGC	1 cut(s)	224
BshFI	GGCC	1 cut(s)	667
BshVI	ATCGAT	1 cut(s)	757
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	1 cut(s)	667
Bsp143I	GATC	2 cut(s)	36, 403
Bsp1720I	GCTNAGC	1 cut(s)	678
BspACI	CCGC	2 cut(s)	488, 644
BspANI	GGCC	1 cut(s)	667
BspCNI	CTCAG	3 cut(s)	224, 314, 670
BspDI	ATCGAT	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	38, 127
BspOI	GCTAGC	1 cut(s)	578
BspPI	GGATC	2 cut(s)	31, 44
BssECI	CCNNGG	2 cut(s)	40, 121
BssMI	GATC	2 cut(s)	36, 403
Bst2UI	CCWGG	2 cut(s)	42, 122
Bst4CI	ACNGT	1 cut(s)	143
BstBAI	YACGTR	1 cut(s)	268
BstC8I	GCNNGC	4 cut(s)	435, 446, 576, 665
BstDEI	CTNAG	4 cut(s)	211, 301, 544, 678
BstF5I	GGATG	3 cut(s)	69, 162, 580
BstKTI	GATC	2 cut(s)	39, 406
BstMBI	GATC	2 cut(s)	36, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstNI	CCWGG	2 cut(s)	42, 122
BstSCI	CCNGG	2 cut(s)	40, 120
BstX2I	RGATCY	1 cut(s)	36
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	36
Bsu15I	ATCGAT	1 cut(s)	757
Bsu36I	CCTNAGG	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	667
BsuTUI	ATCGAT	1 cut(s)	757
BtsCI	GGATG	3 cut(s)	69, 162, 580
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	4 cut(s)	435, 446, 576, 665
Cfr13I	GGNCC	1 cut(s)	242
ClaI	ATCGAT	1 cut(s)	757
Csp6I	GTAC	2 cut(s)	12, 708
CspCI	CAANNNNNGTGG	2 cut(s)	234, 269
CviAII	CATG	4 cut(s)	46, 191, 217, 426
CviJI	RGCY	9 cut(s)	25, 61, 78, 215, 306, 340, 433, 505, 667
CviKI_1	RGCY	9 cut(s)	25, 61, 78, 215, 306, 340, 433, 505, 667
CviQI	GTAC	2 cut(s)	12, 708
DdeI	CTNAG	4 cut(s)	211, 301, 544, 678
DpnI	GATC	2 cut(s)	38, 405
DpnII	GATC	2 cut(s)	36, 403
DriI	GACNNNNNGTC	1 cut(s)	693
Eam1105I	GACNNNNNGTC	1 cut(s)	693
Eco47I	GGWCC	1 cut(s)	242
Eco72I	CACGTG	1 cut(s)	268
Eco81I	CCTNAGG	1 cut(s)	301
EcoRI	GAATTC	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	40, 120
FaeI	CATG	4 cut(s)	49, 194, 220, 429
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	4 cut(s)	45, 190, 216, 425
FauI	CCCGC	1 cut(s)	637
FokI	GGATG	3 cut(s)	56, 149, 567
FspBI	CTAG	2 cut(s)	75, 575
GsaI	CCCAGC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	667
Hin1II	CATG	4 cut(s)	49, 194, 220, 429
HinfI	GANTC	3 cut(s)	87, 359, 491
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	5 cut(s)	14, 245, 560, 708, 736
Hpy188I	TCNGA	1 cut(s)	86
Hpy8I	GTNNAC	5 cut(s)	14, 245, 560, 708, 736
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	2 cut(s)	173, 267
HpyCH4V	TGCA	4 cut(s)	4, 158, 425, 437
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpyF3I	CTNAG	4 cut(s)	211, 301, 544, 678
HpySE526I	ACGT	2 cut(s)	173, 267
Hsp92II	CATG	4 cut(s)	49, 194, 220, 429
Kzo9I	GATC	2 cut(s)	36, 403
LmnI	GCTCC	2 cut(s)	384, 565
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	2 cut(s)	75, 575
MaeII	ACGT	2 cut(s)	173, 267
MaeIII	GTNAC	2 cut(s)	88, 539
MalI	GATC	2 cut(s)	38, 405
MboI	GATC	2 cut(s)	36, 403
MboII	GAAGA	4 cut(s)	61, 215, 329, 521
MfeI	CAATTG	2 cut(s)	27, 712
MflI	RGATCY	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	1 cut(s)	596
MnlI	CCTC	7 cut(s)	51, 163, 176, 305, 310, 341, 724
MseI	TTAA	2 cut(s)	528, 747
MslI	CAYNNNNRTG	1 cut(s)	392
MspA1I	CMGCKG	1 cut(s)	644
MspR9I	CCNGG	2 cut(s)	42, 122
MunI	CAATTG	2 cut(s)	27, 712
MvaI	CCWGG	2 cut(s)	42, 122
MwoI	GCNNNNNNNGC	1 cut(s)	262
NdeII	GATC	2 cut(s)	36, 403
NheI	GCTAGC	1 cut(s)	574
NlaIII	CATG	4 cut(s)	49, 194, 220, 429
NlaIV	GGNNCC	2 cut(s)	38, 127
NmuCI	GTSAC	1 cut(s)	88
PfeI	GAWTC	2 cut(s)	359, 491
PleI	GAGTC	1 cut(s)	95
PmaCI	CACGTG	1 cut(s)	268
PmlI	CACGTG	1 cut(s)	268
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	268
Psp6I	CCWGG	2 cut(s)	40, 120
PspCI	CACGTG	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	40, 120
PspN4I	GGNNCC	2 cut(s)	38, 127
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	36
RsaI	GTAC	2 cut(s)	13, 709
RsaNI	GTAC	2 cut(s)	12, 708
RseI	CAYNNNNRTG	1 cut(s)	392
SaqAI	TTAA	2 cut(s)	528, 747
Sau3AI	GATC	2 cut(s)	36, 403
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	42, 122
SetI	ASST	7 cut(s)	80, 176, 244, 270, 302, 475, 735
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	392
SmlI	CTYRAG	1 cut(s)	62
SmoI	CTYRAG	1 cut(s)	62
SsiI	CCGC	2 cut(s)	488, 644
SspMI	CTAG	2 cut(s)	75, 575
StyD4I	CCNGG	2 cut(s)	40, 120
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	2 cut(s)	176, 270
TaqI	TCGA	4 cut(s)	18, 114, 333, 757
TfiI	GAWTC	2 cut(s)	359, 491
Tru1I	TTAA	2 cut(s)	528, 747
Tru9I	TTAA	2 cut(s)	528, 747
TscAI	CASTG	1 cut(s)	97
TseFI	GTSAC	1 cut(s)	88
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	62, 207
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	4 cut(s)	182, 419, 512, 619
XspI	CTAG	2 cut(s)	75, 575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.