Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002351.1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

328008 .. 328952

Gene Structure 945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002351.1_g000084.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgtatgcatttcgatcagatgaaagtttcatgcaagatggtacactggataagccaattgattggatcccaggcatgaagaatatgaggctcaaggacatccctagctttatcagagtcactgatgtcaacgacataatgttcgacttcttgggatccgaagcacaaaactgcttgaaatcctctgcaatcatcctcaacacgtttgacgaatttgagcatgaagtgttggaagaaatctcagccatgtttcctatcatttacacaataggtccacttgctttgcttggtaggcacgtgcctgaaaacaaattggtcaagtccctcacctcaggcttgtggaaagaagatgccaaatgcctcgaatggcttgacaaacagaaacccgattcggttgtatatgtgaattatgggagcataactatgatgacagatcaacatttgaaagaatttgcatgggggcttgcaaatagcaagcaccattttttgtggattgttaggcctgatgtgggaaaaggggattcagttgtcttgcccgaagaatttttccaggagattaaggataggggttatatagcaagttggtgtccacaggagcaagagctagcacatccatcagtcggggtttttctaactcattgtggttggaattctactattgaaactatatcagcgggggtgcctgtaatttgctggcctttctttgctgagcaacagacgaattgtcgtttcctgtgtaccaattggggaattggtatggaggtaaacaatgatgttaaacgcgatgagattgaagtgcttgtcaaggaaatgctggaaggggaaaaaggcatgaagatgaggcgaaaggcaaaggaatggaagaagaaagcaatagcagctactgacaccggaggatcatcgtacaataattttgaaagacttattaaggaggctcttcaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

314

Amino Acids

35.95

Weight (kDa)

5.23

Isoelectric Point (pI)

36.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	679
AccII	CGCG	1 cut(s)	783
AciI	CCGC	1 cut(s)	674
AclWI	GGATC	5 cut(s)	61, 74, 150, 163, 904
AcsI	RAATTY	4 cut(s)	212, 449, 542, 649
AcvI	CACGTG	1 cut(s)	298
AfaI	GTAC	3 cut(s)	43, 739, 905
AfiI	CCNNNNNNNGG	2 cut(s)	509, 620
AflIII	ACRYGT	1 cut(s)	201
AgsI	TTSAA	6 cut(s)	178, 445, 662, 794, 917, 941
AhdI	GACNNNNNGTC	1 cut(s)	723
AjnI	CCWGG	2 cut(s)	70, 549
AluBI	AGCT	3 cut(s)	108, 604, 881
AluI	AGCT	3 cut(s)	108, 604, 881
AlwI	GGATC	5 cut(s)	61, 74, 150, 163, 904
AlwNI	CAGNNNCTG	1 cut(s)	884
AoxI	GGCC	2 cut(s)	500, 695
ApeKI	GCWGC	1 cut(s)	878
ApoI	RAATTY	4 cut(s)	212, 449, 542, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspS9I	GGNCC	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	319
AsuNHI	GCTAGC	1 cut(s)	604
AvaII	GGWCC	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	331
BamHI	GGATCC	2 cut(s)	66, 155
BanI	GGYRCC	1 cut(s)	679
BbrPI	CACGTG	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	890
BccI	CCATC	2 cut(s)	32, 622
BciT130I	CCWGG	2 cut(s)	72, 551
BfaI	CTAG	2 cut(s)	105, 605
BisI	GCNGC	1 cut(s)	879
BlpI	GCTNAGC	1 cut(s)	708
BlsI	GCNGC	1 cut(s)	880
Bme1390I	CCNGG	2 cut(s)	72, 551
Bme18I	GGWCC	1 cut(s)	272
BmeRI	GACNNNNNGTC	1 cut(s)	723
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	68, 157, 681
BmrFI	CCNGG	2 cut(s)	72, 551
BmsI	GCATC	1 cut(s)	340
BmtI	GCTAGC	1 cut(s)	608
Bpu1102I	GCTNAGC	1 cut(s)	708
BpuEI	CTTGAG	1 cut(s)	77
BsaAI	YACGTR	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	70
BsaWI	WCCGGW	1 cut(s)	890
Bsc4I	CCNNNNNNNGG	2 cut(s)	509, 620
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	72, 551
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	3 cut(s)	99, 192, 610
BseLI	CCNNNNNNNGG	2 cut(s)	509, 620
BseMII	CTCAG	3 cut(s)	255, 345, 699
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	890
Bsh1236I	CGCG	1 cut(s)	783
BshFI	GGCC	2 cut(s)	502, 697
BshNI	GGYRCC	1 cut(s)	679
BsiSI	CCGG	1 cut(s)	891
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	2 cut(s)	509, 620
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	502, 697
Bsp143I	GATC	5 cut(s)	14, 66, 155, 433, 896
Bsp1720I	GCTNAGC	1 cut(s)	708
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	2 cut(s)	502, 697
BspCNI	CTCAG	3 cut(s)	254, 344, 700
BspFNI	CGCG	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	68, 157, 681
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	5 cut(s)	61, 74, 150, 163, 904
BspQI	GCTCTTC	1 cut(s)	942
BspT107I	GGYRCC	1 cut(s)	679
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	5 cut(s)	14, 66, 155, 433, 896
Bst2UI	CCWGG	2 cut(s)	72, 551
Bst6I	CTCTTC	1 cut(s)	942
BstBAI	YACGTR	1 cut(s)	298
BstC8I	GCNNGC	4 cut(s)	465, 476, 606, 695
BstDEI	CTNAG	3 cut(s)	241, 331, 708
BstF5I	GGATG	3 cut(s)	99, 192, 610
BstFNI	CGCG	1 cut(s)	783
BstKTI	GATC	5 cut(s)	17, 69, 158, 436, 899
BstMBI	GATC	5 cut(s)	14, 66, 155, 433, 896
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 878
BstNI	CCWGG	2 cut(s)	72, 551
BstSCI	CCNGG	2 cut(s)	70, 549
BstUI	CGCG	1 cut(s)	783
BstV1I	GCAGC	1 cut(s)	890
BstX2I	RGATCY	2 cut(s)	66, 155
BstXI	CCANNNNNNTGG	1 cut(s)	63
BstYI	RGATCY	2 cut(s)	66, 155
Bsu36I	CCTNAGG	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	502, 697
BtgZI	GCGATG	1 cut(s)	798
BtsCI	GGATG	3 cut(s)	99, 192, 610
BtsIMutI	CAGTG	2 cut(s)	44, 120
Cac8I	GCNNGC	4 cut(s)	465, 476, 606, 695
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	42, 738, 904
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	6 cut(s)	31, 76, 221, 247, 456, 832
CviQI	GTAC	3 cut(s)	42, 738, 904
DdeI	CTNAG	3 cut(s)	241, 331, 708
DpnI	GATC	5 cut(s)	16, 68, 157, 435, 898
DpnII	GATC	5 cut(s)	14, 66, 155, 433, 896
DriI	GACNNNNNGTC	1 cut(s)	723
Eam1104I	CTCTTC	1 cut(s)	942
Eam1105I	GACNNNNNGTC	1 cut(s)	723
EarI	CTCTTC	1 cut(s)	942
Eco147I	AGGCCT	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	272
Eco72I	CACGTG	1 cut(s)	298
Eco81I	CCTNAGG	1 cut(s)	331
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	2 cut(s)	70, 549
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	6 cut(s)	34, 79, 224, 250, 459, 835
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	6 cut(s)	30, 75, 220, 246, 455, 831
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	1 cut(s)	879
FokI	GGATG	3 cut(s)	86, 179, 597
Fsp4HI	GCNGC	1 cut(s)	879
FspBI	CTAG	2 cut(s)	105, 605
GluI	GCNGC	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	502, 697
HapII	CCGG	1 cut(s)	891
Hin1II	CATG	6 cut(s)	34, 79, 224, 250, 459, 835
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	3 cut(s)	117, 389, 521
HpaII	CCGG	1 cut(s)	891
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	6 cut(s)	44, 130, 275, 590, 738, 766
Hpy188I	TCNGA	3 cut(s)	19, 116, 160
Hpy8I	GTNNAC	6 cut(s)	44, 130, 275, 590, 738, 766
HpyAV	CCTTC	1 cut(s)	812
HpyCH4IV	ACGT	2 cut(s)	203, 297
HpyCH4V	TGCA	5 cut(s)	8, 34, 188, 455, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 878
HpyF3I	CTNAG	3 cut(s)	241, 331, 708
HpySE526I	ACGT	2 cut(s)	203, 297
Hsp92II	CATG	6 cut(s)	34, 79, 224, 250, 459, 835
Kzo9I	GATC	5 cut(s)	14, 66, 155, 433, 896
LguI	GCTCTTC	1 cut(s)	942
LmnI	GCTCC	2 cut(s)	414, 595
Lsp1109I	GCAGC	1 cut(s)	890
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	105, 605
MaeII	ACGT	2 cut(s)	203, 297
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	5 cut(s)	16, 68, 157, 435, 898
MboI	GATC	5 cut(s)	14, 66, 155, 433, 896
MboII	GAAGA	8 cut(s)	91, 245, 359, 551, 847, 874, 877, 929
MfeI	CAATTG	2 cut(s)	57, 742
MflI	RGATCY	2 cut(s)	66, 155
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	210, 626
Mph1103I	ATGCAT	1 cut(s)	10
MseI	TTAA	3 cut(s)	558, 777, 927
MslI	CAYNNNNRTG	2 cut(s)	422, 836
MspA1I	CMGCKG	1 cut(s)	674
MspI	CCGG	1 cut(s)	891
MspR9I	CCNGG	2 cut(s)	72, 551
MunI	CAATTG	2 cut(s)	57, 742
MvaI	CCWGG	2 cut(s)	72, 551
MvnI	CGCG	1 cut(s)	783
MwoI	GCNNNNNNNGC	2 cut(s)	292, 878
NdeII	GATC	5 cut(s)	14, 66, 155, 433, 896
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	6 cut(s)	34, 79, 224, 250, 459, 835
NlaIV	GGNNCC	3 cut(s)	68, 157, 681
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	502
PciSI	GCTCTTC	1 cut(s)	942
PfeI	GAWTC	2 cut(s)	389, 521
PfoI	TCCNGGA	1 cut(s)	549
PkrI	GCNGC	1 cut(s)	880
PleI	GAGTC	1 cut(s)	125
PmaCI	CACGTG	1 cut(s)	298
PmlI	CACGTG	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	298
Psp6I	CCWGG	2 cut(s)	70, 549
PspCI	CACGTG	1 cut(s)	298
PspGI	CCWGG	2 cut(s)	70, 549
PspN4I	GGNNCC	3 cut(s)	68, 157, 681
PspPI	GGNCC	1 cut(s)	272
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	2 cut(s)	66, 155
RsaI	GTAC	3 cut(s)	43, 739, 905
RsaNI	GTAC	3 cut(s)	42, 738, 904
RseI	CAYNNNNRTG	2 cut(s)	422, 836
SapI	GCTCTTC	1 cut(s)	942
SaqAI	TTAA	3 cut(s)	558, 777, 927
SatI	GCNGC	1 cut(s)	879
Sau3AI	GATC	5 cut(s)	14, 66, 155, 433, 896
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	2 cut(s)	72, 551
SetI	ASST	8 cut(s)	110, 206, 274, 300, 332, 606, 765, 883
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	422, 836
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	1 cut(s)	674
SspMI	CTAG	2 cut(s)	105, 605
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	2 cut(s)	70, 549
TaiI	ACGT	2 cut(s)	206, 300
TaqI	TCGA	3 cut(s)	13, 144, 363
TfiI	GAWTC	2 cut(s)	389, 521
Tru1I	TTAA	3 cut(s)	558, 777, 927
Tru9I	TTAA	3 cut(s)	558, 777, 927
TscAI	CASTG	2 cut(s)	51, 127
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	878
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	5 cut(s)	19, 36, 92, 237, 848
TspRI	CASTG	2 cut(s)	51, 127
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	4 cut(s)	212, 449, 542, 649
XspI	CTAG	2 cut(s)	105, 605
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.