RLG00000018020

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
24508718 .. 24511650
2933 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018020

Sequence Viewer

Length: 1440 bp
ATGGGTTCGACACAGTTAGGAGCCCAAGAACTGCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGCACTCCAGGGGATTCCGCATAACATTTGTCAACACTGAGTTCAACCACCGGCGTTTAATCCGATCCAGAGGTTCCGACTCTGTCAAGGGACTACCGGACTTCCAATTCGAGACCATACCGGACGGGTTGCCACCTTCAGATAAAGATGCAACTCAAGATGTCCCGGCTTTATGTGACTCCACCAGGAAAACATGTCTAGGCCCTTTTAAGGAGCTGGTGACTAAGCTCAATTCCTCATCTGAAGTGCCACAGATTACTTGTATAATTTCTGATGGCACGACGGGATTTGGGAGGGAAGTTGCTAAGGAACTAGGGATTCCTGAGGTGCAGCTTTGGACTGCTTCTGCTTGTGGCTTCATGGCGTACCTGCAATACAGCGAACTTGTTAAACGAGGCATTGTTCCATTCAAAGATGAAAGTTTCATGCAAGATGGTACACTGGATAAGCCAATTGATTGGATCCCAGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTGATGTCAACGACATAATGTTCGACTTCTTGGGATCCGAAGCACAAAACTGCTTGAAATCCTCTGCAATCATCCTCAACACGTTTGACGAATTTGAGCATGAAGTGTTAGAAGAAATCTCAGCCATGTTTCCTAACATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCACGTGCCTGAAAACAAATTGGTCAAGTCCCTCAGCTCAGGCTTGTGGAAAGAAGATGCAAAATGCCTCGAATGGCTTGACAAACAGAAACCCGATTCGGTTGTGTATGTGAATTATGGGAGCATAACTATGATGACAGACCAACATTTGAAAGAATTTGCATGGGGGCTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTTAGGCCAGATGTGGTAAAAGGGGATTCGGTTGTCTTGCCCGAAGAATTTTTCCAGGAGATTAAGGATAGGGGTTATATAGCAAGTTGGTGTCCACAGGAGCAAGTGCTAGCACATCCATCAGTCGGGGTTTTTCTAACTCATTGTGGTTGGAATTCTACTATTGAAACTATATCAGCGGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCTGAGCAACAGACGAATTGTCGTTTCCTGTGTACCAATTGGGGAATTGGTATGGAGGTAAACAATGATGTTAAACGCGATGAGATTGAAGTGCTTGTCAAGGAAATGCTGGATGGGGATAAAGGCATGAAGATGAGGCGAAAGGCAAGGGAATGGAAGAAGAAAGCAATAGCAGCTACTAACACCGGAGGATCATCGTACAATAATTTTGAAAGACTTATTAAGGAGTCTCTTCAATAA

Protein Analysis

480

Amino Acids

53.95

Weight (kDa)

5.75

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 71 6e-09 Glycosyltransferase, N-terminal domain
UDPGT PF00201 67 - 440 3.8e-26 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccII CGCG 1 cut(s) 1278
AciI CCGC 2 cut(s) 118, 1169
AclWI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1399
AcsI RAATTY 4 cut(s) 707, 944, 1037, 1144
AcuI CTGAAG 2 cut(s) 222, 363
AcvI CACGTG 1 cut(s) 793
AfaI GTAC 4 cut(s) 467, 538, 1234, 1400
AfiI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
AflIII ACRYGT 2 cut(s) 293, 696
AgsI TTSAA 8 cut(s) 145, 511, 673, 940, 1157, 1289, 1412, 1436
AhdI GACNNNNNGTC 1 cut(s) 1218
AjnI CCWGG 4 cut(s) 107, 284, 565, 1044
AluBI AGCT 7 cut(s) 97, 316, 328, 433, 603, 825, 1376
AluI AGCT 7 cut(s) 97, 316, 328, 433, 603, 825, 1376
Alw26I GTCTC 2 cut(s) 206, 1434
AlwI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1399
AoxI GGCC 4 cut(s) 64, 301, 995, 1190
ApeKI GCWGC 2 cut(s) 430, 1373
ApoI RAATTY 4 cut(s) 707, 944, 1037, 1144
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 620, 652
AspS9I GGNCC 2 cut(s) 302, 767
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 331
AsuNHI GCTAGC 1 cut(s) 1099
AvaII GGWCC 1 cut(s) 767
AxyI CCTNAGG 1 cut(s) 423
BamHI GGATCC 2 cut(s) 561, 650
BanII GRGCYC 1 cut(s) 25
BbrPI CACGTG 1 cut(s) 793
BbvCI CCTCAGC 1 cut(s) 821
BbvI GCAGC 2 cut(s) 442, 1385
BccI CCATC 4 cut(s) 368, 527, 1117, 1307
BciT130I CCWGG 4 cut(s) 109, 286, 567, 1046
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 2 cut(s) 206, 1434
BfaI CTAG 4 cut(s) 299, 413, 600, 1100
BfuAI ACCTGC 1 cut(s) 477
BisI GCNGC 2 cut(s) 431, 1374
BlpI GCTNAGC 1 cut(s) 1203
BlsI GCNGC 2 cut(s) 432, 1375
Bme1390I CCNGG 5 cut(s) 109, 266, 286, 567, 1046
Bme18I GGWCC 1 cut(s) 767
BmeRI GACNNNNNGTC 1 cut(s) 1218
BmgT120I GGNCC 2 cut(s) 302, 767
BmiI GGNNCC 4 cut(s) 22, 175, 563, 652
BmrFI CCNGG 5 cut(s) 109, 266, 286, 567, 1046
BmsI GCATC 3 cut(s) 72, 238, 835
BmtI GCTAGC 1 cut(s) 1103
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 3 cut(s) 405, 821, 826
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 2 cut(s) 240, 572
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 793
BsaI GGTCTC 1 cut(s) 206
BsaJI CCNNGG 2 cut(s) 108, 565
BsaWI WCCGGW 3 cut(s) 196, 220, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 310, 1115
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 546
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 4 cut(s) 109, 286, 567, 1046
BseDI CCNNGG 2 cut(s) 108, 565
BseGI GGATG 4 cut(s) 594, 687, 1105, 1318
BseLI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BseMII CTCAG 6 cut(s) 129, 414, 750, 835, 840, 1194
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 2 cut(s) 442, 1385
BseYI CCCAGC 1 cut(s) 55
BsgI GTGCAG 2 cut(s) 86, 449
Bsh1236I CGCG 1 cut(s) 1278
BshFI GGCC 4 cut(s) 66, 303, 997, 1192
BsiSI CCGG 5 cut(s) 151, 197, 221, 266, 1386
BslFI GGGAC 4 cut(s) 32, 204, 248, 802
BslI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BsmAI GTCTC 2 cut(s) 206, 1434
BsmFI GGGAC 4 cut(s) 32, 204, 248, 802
BsnI GGCC 4 cut(s) 66, 303, 997, 1192
Bso31I GGTCTC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 164, 561, 650, 1391
Bsp1720I GCTNAGC 1 cut(s) 1203
BspACI CCGC 2 cut(s) 118, 1169
BspANI GGCC 4 cut(s) 66, 303, 997, 1192
BspCNI CTCAG 6 cut(s) 130, 415, 749, 834, 839, 1195
BspFNI CGCG 1 cut(s) 1278
BspLI GGNNCC 4 cut(s) 22, 175, 563, 652
BspMI ACCTGC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 6 cut(s) 159, 556, 569, 645, 658, 1399
BspTNI GGTCTC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 2 cut(s) 108, 565
BssMI GATC 4 cut(s) 164, 561, 650, 1391
Bst2UI CCWGG 4 cut(s) 109, 286, 567, 1046
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 1437
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 5 cut(s) 36, 960, 971, 1101, 1190
BstDEI CTNAG 8 cut(s) 138, 324, 405, 423, 736, 821, 826, 1203
BstF5I GGATG 4 cut(s) 594, 687, 1105, 1318
BstFNI CGCG 1 cut(s) 1278
BstKTI GATC 4 cut(s) 167, 564, 653, 1394
BstMAI GTCTC 2 cut(s) 206, 1434
BstMBI GATC 4 cut(s) 164, 561, 650, 1391
BstMWI GCNNNNNNNGC 2 cut(s) 787, 1373
BstNI CCWGG 4 cut(s) 109, 286, 567, 1046
BstNSI RCATGY 2 cut(s) 38, 297
BstSCI CCNGG 5 cut(s) 107, 264, 284, 565, 1044
BstUI CGCG 1 cut(s) 1278
BstV1I GCAGC 2 cut(s) 442, 1385
BstX2I RGATCY 2 cut(s) 561, 650
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 2 cut(s) 561, 650
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 4 cut(s) 66, 303, 997, 1192
BtgZI GCGATG 1 cut(s) 1293
BtsCI GGATG 4 cut(s) 594, 687, 1105, 1318
BtsIMutI CAGTG 3 cut(s) 135, 539, 615
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 5 cut(s) 36, 960, 971, 1101, 1190
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 302, 767
Csp6I GTAC 4 cut(s) 466, 537, 1233, 1399
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviQI GTAC 4 cut(s) 466, 537, 1233, 1399
DdeI CTNAG 8 cut(s) 138, 324, 405, 423, 736, 821, 826, 1203
DpnI GATC 4 cut(s) 166, 563, 652, 1393
DpnII GATC 4 cut(s) 164, 561, 650, 1391
DriI GACNNNNNGTC 1 cut(s) 1218
Eam1104I CTCTTC 1 cut(s) 1437
Eam1105I GACNNNNNGTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1437
Eco24I GRGCYC 1 cut(s) 25
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 222, 363
Eco72I CACGTG 1 cut(s) 793
Eco81I CCTNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 4 cut(s) 107, 284, 565, 1044
EcoT38I GRGCYC 1 cut(s) 25
FaqI GGGAC 4 cut(s) 32, 204, 248, 802
FauI CCCGC 1 cut(s) 1162
Fnu4HI GCNGC 2 cut(s) 431, 1374
FokI GGATG 4 cut(s) 581, 674, 1092, 1325
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 2 cut(s) 431, 1374
FspBI CTAG 4 cut(s) 299, 413, 600, 1100
GluI GCNGC 2 cut(s) 431, 1374
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 4 cut(s) 66, 303, 997, 1192
HapII CCGG 5 cut(s) 151, 197, 221, 266, 1386
HincII GTYRAC 3 cut(s) 73, 133, 625
HindII GTYRAC 3 cut(s) 73, 133, 625
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 8 cut(s) 114, 179, 278, 418, 612, 884, 1016, 1427
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 5 cut(s) 151, 197, 221, 266, 1386
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 8 cut(s) 73, 133, 539, 625, 770, 1085, 1233, 1261
Hpy188I TCNGA 7 cut(s) 164, 178, 241, 343, 373, 611, 655
Hpy188III TCNNGA 4 cut(s) 168, 211, 257, 422
Hpy8I GTNNAC 8 cut(s) 73, 133, 539, 625, 770, 1085, 1233, 1261
Hpy99I CGWCG 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4IV ACGT 2 cut(s) 698, 792
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 1373
HpyF3I CTNAG 8 cut(s) 138, 324, 405, 423, 736, 821, 826, 1203
HpySE526I ACGT 2 cut(s) 698, 792
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 164, 561, 650, 1391
LmnI GCTCC 4 cut(s) 20, 313, 909, 1090
Lsp1109I GCAGC 2 cut(s) 442, 1385
LweI GCATC 3 cut(s) 72, 238, 835
MaeI CTAG 4 cut(s) 299, 413, 600, 1100
MaeII ACGT 2 cut(s) 698, 792
MaeIII GTNAC 3 cut(s) 275, 319, 613
MalI GATC 4 cut(s) 166, 563, 652, 1393
MboI GATC 4 cut(s) 164, 561, 650, 1391
MboII GAAGA 8 cut(s) 586, 740, 854, 1046, 1342, 1369, 1372, 1424
MfeI CAATTG 2 cut(s) 552, 1237
MflI RGATCY 2 cut(s) 561, 650
MhlI GDGCHC 1 cut(s) 25
MlyI GAGTC 4 cut(s) 173, 272, 621, 1436
MmeI TCCRAC 2 cut(s) 201, 1121
MseI TTAA 7 cut(s) 72, 158, 309, 489, 1053, 1272, 1422
MslI CAYNNNNRTG 2 cut(s) 917, 1331
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 5 cut(s) 151, 197, 221, 266, 1386
MspR9I CCNGG 5 cut(s) 109, 266, 286, 567, 1046
MunI CAATTG 2 cut(s) 552, 1237
MvaI CCWGG 4 cut(s) 109, 286, 567, 1046
MvnI CGCG 1 cut(s) 1278
MwoI GCNNNNNNNGC 2 cut(s) 787, 1373
NciI CCSGG 1 cut(s) 266
NdeII GATC 4 cut(s) 164, 561, 650, 1391
NheI GCTAGC 1 cut(s) 1099
NlaIV GGNNCC 4 cut(s) 22, 175, 563, 652
NmuCI GTSAC 3 cut(s) 275, 319, 613
NspI RCATGY 2 cut(s) 38, 297
PaeI GCATGC 1 cut(s) 38
PciI ACATGT 1 cut(s) 293
PfeI GAWTC 4 cut(s) 114, 418, 884, 1016
PflFI GACNNNGTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 1044
PkrI GCNGC 2 cut(s) 432, 1375
PleI GAGTC 4 cut(s) 173, 272, 620, 1435
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 4 cut(s) 173, 272, 620, 1435
Ppu21I YACGTR 1 cut(s) 793
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 4 cut(s) 107, 284, 565, 1044
PspCI CACGTG 1 cut(s) 793
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 4 cut(s) 107, 284, 565, 1044
PspN4I GGNNCC 4 cut(s) 22, 175, 563, 652
PspPI GGNCC 2 cut(s) 302, 767
PsuI RGATCY 2 cut(s) 561, 650
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 4 cut(s) 467, 538, 1234, 1400
RsaNI GTAC 4 cut(s) 466, 537, 1233, 1399
RseI CAYNNNNRTG 2 cut(s) 917, 1331
SaqAI TTAA 7 cut(s) 72, 158, 309, 489, 1053, 1272, 1422
SatI GCNGC 2 cut(s) 431, 1374
Sau3AI GATC 4 cut(s) 164, 561, 650, 1391
Sau96I GGNCC 2 cut(s) 302, 767
SchI GAGTC 4 cut(s) 173, 272, 621, 1436
ScrFI CCNGG 5 cut(s) 109, 266, 286, 567, 1046
SduI GDGCHC 1 cut(s) 25
SfaNI GCATC 3 cut(s) 72, 238, 835
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 917, 1331
SmlI CTYRAG 2 cut(s) 255, 587
SmoI CTYRAG 2 cut(s) 255, 587
SphI GCATGC 1 cut(s) 38
SsiI CCGC 2 cut(s) 118, 1169
SspMI CTAG 4 cut(s) 299, 413, 600, 1100
StyD4I CCNGG 5 cut(s) 107, 264, 284, 565, 1044
TaaI ACNGT 1 cut(s) 15
TaiI ACGT 2 cut(s) 701, 795
TaqI TCGA 4 cut(s) 8, 210, 639, 858
TfiI GAWTC 4 cut(s) 114, 418, 884, 1016
Tru1I TTAA 7 cut(s) 72, 158, 309, 489, 1053, 1272, 1422
Tru9I TTAA 7 cut(s) 72, 158, 309, 489, 1053, 1272, 1422
TscAI CASTG 3 cut(s) 142, 546, 622
TseFI GTSAC 3 cut(s) 275, 319, 613
TseI GCWGC 2 cut(s) 430, 1373
Tsp45I GTSAC 3 cut(s) 275, 319, 613
TspDTI ATGAA 6 cut(s) 448, 514, 531, 587, 732, 1343
TspRI CASTG 3 cut(s) 142, 546, 622
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 4 cut(s) 707, 944, 1037, 1144
XceI RCATGY 2 cut(s) 38, 297
XspI CTAG 4 cut(s) 299, 413, 600, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.