Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

35651755 .. 35653720

Gene Structure 1966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1245700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGATGAGTTCAGTAGAACAAACAACCAAAAAAGGGCATGCAGTTTTTGTCCCATACCCAGCACAAGGCCATGTTAACCCCATGATGCAGTTAGCCAAGTTTCTTCACTCAAGGGGCTTCCACATAACCTTTGTCAACACCGAGTTCAACCACAACCGTTTAATCCGGTCAAAAGGTCCCGACTCCGTTAAGGATGGTACCCAAGATATTCCAGCTTTATGTGACTCCATTAAGAAAACTTGTTTTGGTCCATTTAAAGAGCTGGTGGCTAAGATTAAATCCTCATCTCAAGTGCCACAAGTTACTTGCATAGTTGCAGATGGTGTCATGACCTTTGGGTGCAAAGCTGCTAGAGAATTAGGCATTCCGGAGGTTGTGTTATGGACTGCATCTGCTTGTGGCTTCATGGGGTACTTGCAATATAACGAACTCGTCAAACGTGGCATGATTCCGTTCAAAGATGAGAATTTCATGCATGATGGCACACTCGATACACCAATTGATTGGATCCCAGGCATGAAAAATGTTCGACTCAAGGACATCCCGAGTTTCATTAGAGTTACTGATCTCAGCGACATAATGTTTAATTACTTGGGATCCGAAGCACGAAGTTGTTTGAACTCTTCTGCAATCCTCTTCAACACATTTGATGAATTTGAACATGAAGTGTTAGAGGTAATATCGATAATGTTTCCCAACATTTACACCATTGGCCCCTTTAATTTGCTAGGCAGGCATTTCCCTGAAAGCAAGTCACTTAACTCAAGCTTATGGAAAGAAGACGCAAAATGTTCGGAATGGCTTGATAAAAAGAAACCCAATTCAGTTGTGTACGTAAATTATGGCAGCATAACGATGATGACAGACCAACATTTGATTGAGTTTGCATGGGGGCTGGCAAATAGCAAGCACCCATTTTTATGGATAGTTAGGGCTGACGTGGTAAAGGGTAACTCACCAATTTTACCTGATGAATTTTTTGAGGAGATTAAGGATAGGGGTTATATTGCAGGTTGGTGTGCACAGGACCAAGTGTTAGCTCATCCATCTGTTGGGGTTTTCCTAACACACAGTGGTTGGAATTCTACCATTGAAAGTATATCTCACGGTGTGCCTGTAATTTGCTGGCCTTTCTTCGCGGAGCAACAAACAAATTGTCGGTACTCATGCACAACATGGGAGATTGGAATGGAGGTGAGCCCCGATGTGAAGCGCAATGAAATAGAAGCACTTGTTAAGGAAATGATGGAAGGTGAAGGAGGGATAAAGACGAGGGAAAAGGCAAAGGAATGGAAGAAAAAAGCTGTTGAAGCTACTGATGTTGGAGGATCATCGTACAATAATTTTGAGAGATTGTTTAAGGAGGTACTCCAACTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

461

Amino Acids

52.02

Weight (kDa)

6.04

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	15 - 58	5.1e-07	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	77 - 418	9.1e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1001
Acc65I	GGTACC	1 cut(s)	197
AccB1I	GGYRCC	1 cut(s)	197
AccB7I	CCANNNNNTGG	1 cut(s)	1052
AccII	CGCG	1 cut(s)	1139
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	1139
AclWI	GGATC	5 cut(s)	502, 515, 591, 604, 1336
AcsI	RAATTY	4 cut(s)	466, 653, 974, 1081
AdeI	CACNNNGTG	2 cut(s)	1073, 1111
AfaI	GTAC	6 cut(s)	199, 413, 833, 1163, 1337, 1368
AfiI	CCNNNNNNNGG	3 cut(s)	33, 65, 1052
AgsI	TTSAA	7 cut(s)	148, 457, 619, 640, 659, 1094, 1310
AjiI	CACGTC	1 cut(s)	940
AjnI	CCWGG	1 cut(s)	511
AluBI	AGCT	7 cut(s)	215, 262, 347, 768, 1040, 1304, 1313
AluI	AGCT	7 cut(s)	215, 262, 347, 768, 1040, 1304, 1313
Alw21I	GWGCWC	1 cut(s)	1024
Alw44I	GTGCAC	1 cut(s)	1020
AlwI	GGATC	5 cut(s)	502, 515, 591, 604, 1336
Ama87I	CYCGRG	1 cut(s)	544
Aor13HI	TCCGGA	1 cut(s)	367
AoxI	GGCC	3 cut(s)	67, 712, 1127
ApaLI	GTGCAC	1 cut(s)	1020
ApeKI	GCWGC	2 cut(s)	347, 846
ApoI	RAATTY	4 cut(s)	466, 653, 974, 1081
ArsI	GACNNNNNNTTYG	2 cut(s)	1141, 1173
Asp718I	GGTACC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	1215
AspS9I	GGNCC	4 cut(s)	176, 248, 713, 1027
AsuHPI	GGTGA	3 cut(s)	948, 1207, 1265
AvaI	CYCGRG	1 cut(s)	544
AvaII	GGWCC	3 cut(s)	176, 248, 1027
BaeGI	GKGCMC	1 cut(s)	1024
BamHI	GGATCC	2 cut(s)	507, 596
BanI	GGYRCC	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	1202
BbsI	GAAGAC	1 cut(s)	786
Bbv12I	GWGCWC	1 cut(s)	1024
BbvI	GCAGC	2 cut(s)	334, 858
BccI	CCATC	5 cut(s)	188, 314, 473, 1054, 1240
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BciT130I	CCWGG	1 cut(s)	513
BfaI	CTAG	2 cut(s)	351, 728
BfuAI	ACCTGC	1 cut(s)	1001
BisI	GCNGC	2 cut(s)	348, 847
BlsI	GCNGC	2 cut(s)	349, 848
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	176, 248, 1027
BmeT110I	CYCGRG	1 cut(s)	544
BmgBI	CACGTC	1 cut(s)	940
BmgT120I	GGNCC	4 cut(s)	176, 248, 713, 1027
BmiI	GGNNCC	5 cut(s)	178, 199, 509, 598, 715
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	75, 398
BpiI	GAAGAC	1 cut(s)	786
BpuEI	CTTGAG	4 cut(s)	94, 273, 518, 748
Bsa29I	ATCGAT	1 cut(s)	683
BsaAI	YACGTR	1 cut(s)	835
BsaJI	CCNNGG	1 cut(s)	511
BsaWI	WCCGGW	2 cut(s)	165, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 65, 1052
Bse3DI	GCAATG	1 cut(s)	1222
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	683
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	3 cut(s)	199, 540, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	33, 65, 1052
BseMI	GCAATG	1 cut(s)	1222
BseMII	CTCAG	1 cut(s)	583
BseRI	GAGGAG	1 cut(s)	998
BseSI	GKGCMC	1 cut(s)	1024
BseXI	GCAGC	2 cut(s)	334, 858
BseYI	CCCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	1139
BshFI	GGCC	3 cut(s)	69, 714, 1129
BshNI	GGYRCC	1 cut(s)	197
BshVI	ATCGAT	1 cut(s)	683
BsiHKAI	GWGCWC	1 cut(s)	1024
BsiHKCI	CYCGRG	1 cut(s)	544
BsiSI	CCGG	2 cut(s)	166, 368
BslFI	GGGAC	2 cut(s)	35, 162
BslI	CCNNNNNNNGG	3 cut(s)	33, 65, 1052
BsmFI	GGGAC	2 cut(s)	35, 162
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	69, 714, 1129
BsoBI	CYCGRG	1 cut(s)	544
Bsp1286I	GDGCHC	2 cut(s)	1024, 1202
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	507, 565, 596, 1328
BspACI	CCGC	1 cut(s)	1139
BspANI	GGCC	3 cut(s)	69, 714, 1129
BspCNI	CTCAG	1 cut(s)	582
BspDI	ATCGAT	1 cut(s)	683
BspEI	TCCGGA	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	1139
BspHI	TCATGA	1 cut(s)	327
BspLI	GGNNCC	5 cut(s)	178, 199, 509, 598, 715
BspMI	ACCTGC	1 cut(s)	1001
BspPI	GGATC	5 cut(s)	502, 515, 591, 604, 1336
BspT107I	GGYRCC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	1222
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	4 cut(s)	507, 565, 596, 1328
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	3 cut(s)	158, 1073, 1109
Bst6I	CTCTTC	2 cut(s)	628, 641
BstBAI	YACGTR	1 cut(s)	835
BstC8I	GCNNGC	5 cut(s)	39, 734, 897, 908, 1127
BstDEI	CTNAG	2 cut(s)	270, 569
BstF5I	GGATG	3 cut(s)	199, 540, 1042
BstFNI	CGCG	1 cut(s)	1139
BstHHI	GCGC	1 cut(s)	1215
BstKTI	GATC	4 cut(s)	510, 568, 599, 1331
BstMBI	GATC	4 cut(s)	507, 565, 596, 1328
BstMWI	GCNNNNNNNGC	2 cut(s)	733, 1310
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	511
BstSLI	GKGCMC	1 cut(s)	1024
BstSNI	TACGTA	1 cut(s)	835
BstUI	CGCG	1 cut(s)	1139
BstV1I	GCAGC	2 cut(s)	334, 858
BstV2I	GAAGAC	1 cut(s)	786
BstX2I	RGATCY	2 cut(s)	507, 596
BstXI	CCANNNNNNTGG	2 cut(s)	504, 921
BstYI	RGATCY	2 cut(s)	507, 596
Bsu15I	ATCGAT	1 cut(s)	683
BsuRI	GGCC	3 cut(s)	69, 714, 1129
BsuTUI	ATCGAT	1 cut(s)	683
BtrI	CACGTC	1 cut(s)	940
BtsCI	GGATG	3 cut(s)	199, 540, 1042
BtsIMutI	CAGTG	1 cut(s)	1078
BveI	ACCTGC	1 cut(s)	1001
Cac8I	GCNNGC	5 cut(s)	39, 734, 897, 908, 1127
CciI	TCATGA	1 cut(s)	327
CfoI	GCGC	1 cut(s)	1215
Cfr13I	GGNCC	4 cut(s)	176, 248, 713, 1027
ClaI	ATCGAT	1 cut(s)	683
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	6 cut(s)	198, 412, 832, 1162, 1336, 1367
CviQI	GTAC	6 cut(s)	198, 412, 832, 1162, 1336, 1367
DdeI	CTNAG	2 cut(s)	270, 569
DpnI	GATC	4 cut(s)	509, 567, 598, 1330
DpnII	GATC	4 cut(s)	507, 565, 596, 1328
DraI	TTTAAA	1 cut(s)	256
DraIII	CACNNNGTG	2 cut(s)	1073, 1111
Eam1104I	CTCTTC	2 cut(s)	628, 641
EarI	CTCTTC	2 cut(s)	628, 641
Eco105I	TACGTA	1 cut(s)	835
Eco24I	GRGCYC	1 cut(s)	1202
Eco47I	GGWCC	3 cut(s)	176, 248, 1027
Eco88I	CYCGRG	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	1 cut(s)	1081
EcoRII	CCWGG	1 cut(s)	511
EcoT22I	ATGCAT	1 cut(s)	477
EcoT38I	GRGCYC	1 cut(s)	1202
FaqI	GGGAC	2 cut(s)	35, 162
Fnu4HI	GCNGC	2 cut(s)	348, 847
FokI	GGATG	3 cut(s)	206, 527, 1029
FriOI	GRGCYC	1 cut(s)	1202
Fsp4HI	GCNGC	2 cut(s)	348, 847
FspBI	CTAG	2 cut(s)	351, 728
GlaI	GCGC	1 cut(s)	1214
GluI	GCNGC	2 cut(s)	348, 847
GsaI	CCCAGC	1 cut(s)	62
HaeIII	GGCC	3 cut(s)	69, 714, 1129
HapII	CCGG	2 cut(s)	166, 368
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	1 cut(s)	1215
Hin6I	GCGC	1 cut(s)	1213
HinP1I	GCGC	1 cut(s)	1213
HincII	GTYRAC	2 cut(s)	76, 136
HindII	GTYRAC	2 cut(s)	76, 136
HindIII	AAGCTT	1 cut(s)	766
HinfI	GANTC	4 cut(s)	182, 224, 448, 531
HpaI	GTTAAC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	166, 368
HphI	GGTGA	3 cut(s)	948, 1207, 1265
Hpy166II	GTNNAC	4 cut(s)	76, 136, 832, 1022
Hpy188I	TCNGA	2 cut(s)	601, 796
Hpy188III	TCNNGA	4 cut(s)	179, 328, 368, 544
Hpy8I	GTNNAC	4 cut(s)	76, 136, 832, 1022
HpyAV	CCTTC	2 cut(s)	1244, 1250
HpyCH4III	ACNGT	3 cut(s)	158, 1073, 1109
HpyCH4IV	ACGT	3 cut(s)	439, 834, 939
HpyF10VI	GCNNNNNNNGC	2 cut(s)	733, 1310
HpyF3I	CTNAG	2 cut(s)	270, 569
HpySE526I	ACGT	3 cut(s)	439, 834, 939
HspAI	GCGC	1 cut(s)	1213
Kpn2I	TCCGGA	1 cut(s)	367
KpnI	GGTACC	1 cut(s)	201
KspAI	GTTAAC	1 cut(s)	76
Kzo9I	GATC	4 cut(s)	507, 565, 596, 1328
LmnI	GCTCC	1 cut(s)	1141
Lsp1109I	GCAGC	2 cut(s)	334, 858
LweI	GCATC	2 cut(s)	75, 398
MaeI	CTAG	2 cut(s)	351, 728
MaeII	ACGT	3 cut(s)	439, 834, 939
MaeIII	GTNAC	5 cut(s)	221, 301, 559, 753, 950
MalI	GATC	4 cut(s)	509, 567, 598, 1330
MboI	GATC	4 cut(s)	507, 565, 596, 1328
MboII	GAAGA	6 cut(s)	95, 615, 628, 791, 1126, 1306
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	507, 596
MhlI	GDGCHC	2 cut(s)	1024, 1202
MlyI	GAGTC	3 cut(s)	176, 218, 525
MmeI	TCCRAC	2 cut(s)	1058, 1303
Mph1103I	ATGCAT	1 cut(s)	477
MroI	TCCGGA	1 cut(s)	367
MslI	CAYNNNNRTG	2 cut(s)	854, 919
MspI	CCGG	2 cut(s)	166, 368
MspR9I	CCNGG	1 cut(s)	513
MunI	CAATTG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	1 cut(s)	513
MvnI	CGCG	1 cut(s)	1139
MwoI	GCNNNNNNNGC	2 cut(s)	733, 1310
NdeII	GATC	4 cut(s)	507, 565, 596, 1328
NlaIV	GGNNCC	5 cut(s)	178, 199, 509, 598, 715
NmuCI	GTSAC	2 cut(s)	221, 753
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PagI	TCATGA	1 cut(s)	327
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	1 cut(s)	448
PflMI	CCANNNNNTGG	1 cut(s)	1052
PkrI	GCNGC	2 cut(s)	349, 848
PleI	GAGTC	3 cut(s)	176, 218, 525
PpsI	GAGTC	3 cut(s)	176, 218, 525
Ppu21I	YACGTR	1 cut(s)	835
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	511
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	5 cut(s)	178, 199, 509, 598, 715
PspPI	GGNCC	4 cut(s)	176, 248, 713, 1027
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	507, 596
RsaI	GTAC	6 cut(s)	199, 413, 833, 1163, 1337, 1368
RsaNI	GTAC	6 cut(s)	198, 412, 832, 1162, 1336, 1367
RseI	CAYNNNNRTG	2 cut(s)	854, 919
SatI	GCNGC	2 cut(s)	348, 847
Sau3AI	GATC	4 cut(s)	507, 565, 596, 1328
Sau96I	GGNCC	4 cut(s)	176, 248, 713, 1027
SchI	GAGTC	3 cut(s)	176, 218, 525
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	1024, 1202
SfaNI	GCATC	2 cut(s)	75, 398
SinI	GGWCC	3 cut(s)	176, 248, 1027
SmiMI	CAYNNNNRTG	2 cut(s)	854, 919
SmlI	CTYRAG	4 cut(s)	109, 288, 533, 763
SmoI	CTYRAG	4 cut(s)	109, 288, 533, 763
SnaBI	TACGTA	1 cut(s)	835
SphI	GCATGC	1 cut(s)	41
SsiI	CCGC	1 cut(s)	1139
SspMI	CTAG	2 cut(s)	351, 728
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	3 cut(s)	158, 1073, 1109
TaiI	ACGT	3 cut(s)	442, 837, 942
TaqI	TCGA	3 cut(s)	489, 529, 683
TfiI	GAWTC	1 cut(s)	448
TscAI	CASTG	1 cut(s)	1078
TseFI	GTSAC	2 cut(s)	221, 753
TseI	GCWGC	2 cut(s)	347, 846
Tsp45I	GTSAC	2 cut(s)	221, 753
TspDTI	ATGAA	8 cut(s)	394, 460, 533, 541, 666, 678, 987, 1233
TspGWI	ACGGA	2 cut(s)	175, 441
TspRI	CASTG	1 cut(s)	1078
Van91I	CCANNNNNTGG	1 cut(s)	1052
VneI	GTGCAC	1 cut(s)	1020
VpaK11BI	GGWCC	3 cut(s)	176, 248, 1027
XapI	RAATTY	4 cut(s)	466, 653, 974, 1081
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	2 cut(s)	351, 728
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.