Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

6051164 .. 6052042

Gene Structure 879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGAGAAATGTTCGGCTCAAGGACATCCCGAGTTTCATTAGAGTTACTGATCTCAACGACATAATGTTTAATTTGATGCGATCCGAAGTTTGGAGCTGTTTGAACTCTTCTGCAATCATCTTCAACACATTTGACGAATTTGAACACGAAGTGTTAGAGGTAATATTGACAATGTTCCCCAACATTTACACCATTGGCCCCCTTAATTTGCTTGGCAGGCATTTCTCGGAAAACAGTTTGGTTAAGTCAATGAACTCAAGCTTATGGAAAGAAGACACAGAATGTTTGGAATGGCTTGATAAACAAAAACCCAATTCAGTTGTGTATGCAAATTATGGATGCATAACGACGATGACTGACCAACATTTGATCGAGTTTGCCTGGGGGCTAGCAAATAGCAAGCACCCATTTTTGTGGCTAGTTAGGGCTGATGTGGTAAAGGGTGACTTACCAATTTTACCTGATGAATTTTTTGACGAGATTAAGCATAGGGGATATATTGCAAGTTGGTGTACACAGGAGCAAGTGTTAGCTCATCCATCTGTTGGGGTTTTCCTAACACACAGTGGTTGGAATTCTACCATTGAAACTATATCTCACGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCAGACCAACAAACGAATTGTCGGTACTCGTGTTCAACGTGGGAGATTGGAATGGAGGTGAGCCCCGATGTGAAGCGCCACGAAATTGAAGCACTTGTTAAGGAAATGCTAGAAGGAGAAGGAGGGATGAAGATGAGGGGAAAGGCAAAGGAATGGAAGAAAAAAGCTGTTGAAGCTACTGATGTTGGAGGATCATCGTACAATAATATTGAGAGATTGTTTAAGGAGGCACTCCAACTTGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

293

Amino Acids

33.49

Weight (kDa)

5.27

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	97 - 249	2.3e-22	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	545
AclWI	GGATC	2 cut(s)	75, 829
AcsI	RAATTY	3 cut(s)	137, 467, 574
AdeI	CACNNNGTG	3 cut(s)	151, 566, 604
AfaI	GTAC	3 cut(s)	514, 656, 830
AfiI	CCNNNNNNNGG	2 cut(s)	90, 545
AgsI	TTSAA	7 cut(s)	103, 124, 143, 587, 666, 719, 803
AjnI	CCWGG	1 cut(s)	380
AluBI	AGCT	5 cut(s)	96, 261, 533, 797, 806
AluI	AGCT	5 cut(s)	96, 261, 533, 797, 806
AlwI	GGATC	2 cut(s)	75, 829
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	196, 620
ApoI	RAATTY	3 cut(s)	137, 467, 574
ArsI	GACNNNNNNTTYG	2 cut(s)	634, 666
AspLEI	GCGC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	455, 700
AsuNHI	GCTAGC	1 cut(s)	388
AvaI	CYCGRG	1 cut(s)	28
BaeI	ACNNNNGTAYC	2 cut(s)	646, 679
BanII	GRGCYC	1 cut(s)	695
BauI	CACGAG	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	382
BfaI	CTAG	3 cut(s)	389, 419, 740
BfoI	RGCGCY	1 cut(s)	709
Bme1390I	CCNGG	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	382
BmsI	GCATC	2 cut(s)	66, 329
BmtI	GCTAGC	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	241
BsaJI	CCNNGG	1 cut(s)	381
BsaXI	ACNNNNNCTCC	2 cut(s)	512, 542
Bsc4I	CCNNNNNNNGG	2 cut(s)	90, 545
BseBI	CCWGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	4 cut(s)	24, 344, 535, 762
BseLI	CCNNNNNNNGG	2 cut(s)	90, 545
BshFI	GGCC	2 cut(s)	198, 622
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	90, 545
BsnI	GGCC	2 cut(s)	198, 622
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	695
Bsp1407I	TGTACA	1 cut(s)	512
Bsp143I	GATC	4 cut(s)	49, 80, 369, 821
BspANI	GGCC	2 cut(s)	198, 622
BspLI	GGNNCC	1 cut(s)	199
BspOI	GCTAGC	1 cut(s)	392
BspPI	GGATC	2 cut(s)	75, 829
BsrGI	TGTACA	1 cut(s)	512
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	4 cut(s)	49, 80, 369, 821
BssSI	CACGAG	1 cut(s)	658
Bst2BI	CACGAG	1 cut(s)	658
Bst2UI	CCWGG	1 cut(s)	382
Bst4CI	ACNGT	3 cut(s)	236, 566, 602
Bst6I	CTCTTC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	512
BstC8I	GCNNGC	4 cut(s)	218, 390, 401, 620
BstF5I	GGATG	4 cut(s)	24, 344, 535, 762
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	4 cut(s)	52, 83, 372, 824
BstMBI	GATC	4 cut(s)	49, 80, 369, 821
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 803
BstNI	CCWGG	1 cut(s)	382
BstSCI	CCNGG	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	414
BsuRI	GGCC	2 cut(s)	198, 622
BtsCI	GGATG	4 cut(s)	24, 344, 535, 762
BtsIMutI	CAGTG	1 cut(s)	571
Cac8I	GCNNGC	4 cut(s)	218, 390, 401, 620
CfoI	GCGC	1 cut(s)	708
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	513, 655, 829
CviQI	GTAC	3 cut(s)	513, 655, 829
DpnI	GATC	4 cut(s)	51, 82, 371, 823
DpnII	GATC	4 cut(s)	49, 80, 369, 821
DraIII	CACNNNGTG	3 cut(s)	151, 566, 604
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco24I	GRGCYC	1 cut(s)	695
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	380
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	695
FaiI	YATR	8 cut(s)	62, 265, 327, 336, 344, 489, 498, 593
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FokI	GGATG	4 cut(s)	11, 351, 522, 769
FriOI	GRGCYC	1 cut(s)	695
FspBI	CTAG	3 cut(s)	389, 419, 740
GlaI	GCGC	1 cut(s)	707
HaeII	RGCGCY	1 cut(s)	709
HaeIII	GGCC	2 cut(s)	198, 622
HhaI	GCGC	1 cut(s)	708
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HindIII	AAGCTT	1 cut(s)	259
HphI	GGTGA	2 cut(s)	455, 700
Hpy166II	GTNNAC	2 cut(s)	513, 515
Hpy188I	TCNGA	2 cut(s)	85, 229
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	2 cut(s)	513, 515
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	737, 743
HpyCH4III	ACNGT	3 cut(s)	236, 566, 602
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	5 cut(s)	113, 329, 342, 503, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 803
HpySE526I	ACGT	1 cut(s)	668
HspAI	GCGC	1 cut(s)	706
Kzo9I	GATC	4 cut(s)	49, 80, 369, 821
LmnI	GCTCC	2 cut(s)	93, 520
LpnPI	CCDG	7 cut(s)	202, 367, 394, 474, 503, 604, 621
LweI	GCATC	2 cut(s)	66, 329
MaeI	CTAG	3 cut(s)	389, 419, 740
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	2 cut(s)	43, 443
MalI	GATC	4 cut(s)	51, 82, 371, 823
MboI	GATC	4 cut(s)	49, 80, 369, 821
MboII	GAAGA	5 cut(s)	99, 112, 284, 772, 799
MhlI	GDGCHC	1 cut(s)	695
MmeI	TCCRAC	2 cut(s)	551, 796
MnlI	CCTC	6 cut(s)	151, 679, 746, 759, 812, 850
Mph1103I	ATGCAT	1 cut(s)	344
MseI	TTAA	6 cut(s)	69, 204, 243, 483, 729, 852
MslI	CAYNNNNRTG	1 cut(s)	412
MspR9I	CCNGG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	382
MwoI	GCNNNNNNNGC	2 cut(s)	217, 803
NdeII	GATC	4 cut(s)	49, 80, 369, 821
NheI	GCTAGC	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	443
NsiI	ATGCAT	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	380
PspN4I	GGNNCC	1 cut(s)	199
PspPI	GGNCC	1 cut(s)	197
RsaI	GTAC	3 cut(s)	514, 656, 830
RsaNI	GTAC	3 cut(s)	513, 655, 829
RseI	CAYNNNNRTG	1 cut(s)	412
SaqAI	TTAA	6 cut(s)	69, 204, 243, 483, 729, 852
Sau3AI	GATC	4 cut(s)	49, 80, 369, 821
Sau96I	GGNCC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	382
SduI	GDGCHC	1 cut(s)	695
SetI	ASST	9 cut(s)	98, 162, 263, 463, 535, 671, 690, 799, 808
SfaNI	GCATC	2 cut(s)	66, 329
SmiMI	CAYNNNNRTG	1 cut(s)	412
SmlI	CTYRAG	2 cut(s)	17, 256
SmoI	CTYRAG	2 cut(s)	17, 256
SspI	AATATT	2 cut(s)	165, 838
SspMI	CTAG	3 cut(s)	389, 419, 740
StyD4I	CCNGG	1 cut(s)	380
TaaI	ACNGT	3 cut(s)	236, 566, 602
TaiI	ACGT	1 cut(s)	671
TaqI	TCGA	1 cut(s)	372
TatI	WGTACW	1 cut(s)	512
Tru1I	TTAA	6 cut(s)	69, 204, 243, 483, 729, 852
Tru9I	TTAA	6 cut(s)	69, 204, 243, 483, 729, 852
TscAI	CASTG	1 cut(s)	571
TseFI	GTSAC	1 cut(s)	443
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	4 cut(s)	25, 266, 480, 773
TspRI	CASTG	1 cut(s)	571
Van91I	CCANNNNNTGG	1 cut(s)	545
XapI	RAATTY	3 cut(s)	137, 467, 574
XspI	CTAG	3 cut(s)	389, 419, 740
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.