Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

11477132 .. 11479608

Gene Structure 2477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1033000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGATGAGTTCAGTAGAACAAGCAACTAAAAAACGGCATGCAGTTTTTGTCCCATACCCATCACAAGGCCATGTAACCCCCATGATGCAATTAGCAAAGCTTCTTCACTCAAGGGGCTTCCACATAACCTTTGTCAACACCGAGTTCAACCACAACCGTTTAATCCGTTCAAAAGGTCCTGACTCCGTTAAGGGCCTACCGGACTTTGTGTTCGAGACCATTCCAGACGGGTTGCCTCCTTCGGATAAGGATGGAACCCAAGATATTCCAGATTTAAGTGACTCCGTTAAGAAAACTTGTCTTGGTCCATTTAAAGAGCTGGTGACTAAGATCAATTCCTCATCTGAAGTGCCACAAGTTACTTGCATAGTTGCAGATGGTACCATGACCTTTGGGAGCAAAGCTGCTAGAGAATTAGGCATTCCGGAGGTCACGTTATGGACTGCCTCTGCTTGTGGCTTCATGGGGTACTTGCAATTCAGCGAACTCGTCAAACGTGGCATTATTCCATTCAAAGATGAGAATTTCATGCATGATGGTACGCTCGATACACCAATTGACTGGATCCCAGGCATGAAAAATATTCGGCTCAAGGATATCCCAAGTCACATTAGACTTACTAATCTCAACGGCGTAATGTTTAATTTCATGGGATCCGAAGCACGGAACTGTTTGAACTCTTCTGCAATCATCTTCAACACTTTTGACGAATTTGAACACGAAGTTTTAGAGGTAATATTGACAATGTTCCCCAACATTTACACCATTGGCCCCCTTAATTTGCTTGGCAGGCATTTCCCTAAAAGCAAGTCACTTAACTCAAGCTTATGGAAAGAAGACAAAAAATGTTTGGAATGGCTTGATAAAAAGAAACCTAATTCAGTTGTGTACGTAAATTATGGTAGTGTAACGACGATGACAGACCAACATTTGATCGAGTTTGCATGGGGGCTGGCAAATAGCAAGCACCCATTTTTATGGATAGTTAGGGCTGACGTGGTAAAGGGTGACTCATCAATTTTACCCGACGAATTTTTTGAGGAGTTTAAGGATAGGGGTTATATTGCAGGTTGGTGTGCACAGGAGCAAGTGTTAGCTCATCCATCTATTGGGGTTTTCCTAACACACAGTGGTTGGAATTCTACCATTGAAACTATATCTCATGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCGGACCAGCAAACGAATTGTCGGTACTCATGCACAACTTGGGAGATTGGAATGGAGGTGAGCCCCGACGTGAGGCGCGACGAAATTGAAGCACTTGTTAAGGAAATGCTGGAAGGAAAAGGAGGGATGAAGATGAGGGAAAAGGCAAAGGAATGGAAGAAAAAAGCTGTTGAAGCTACCGATGTTGGAGGATCATCGTACAATAATTTTGGGAGATTGTTTAAGGAGGCACTCCAACTTGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

481

Amino Acids

54.03

Weight (kDa)

6.09

Isoelectric Point (pI)

37.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	28 - 438	1.9e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1058
Acc65I	GGTACC	1 cut(s)	380
AccB1I	GGYRCC	1 cut(s)	380
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccII	CGCG	1 cut(s)	1272
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	1 cut(s)	1196
AclWI	GGATC	5 cut(s)	559, 572, 648, 661, 1393
AcsI	RAATTY	4 cut(s)	523, 710, 1031, 1138
AcuI	CTGAAG	1 cut(s)	366
AdeI	CACNNNGTG	1 cut(s)	1130
AfaI	GTAC	6 cut(s)	382, 470, 541, 890, 1220, 1394
AfiI	CCNNNNNNNGG	4 cut(s)	65, 663, 1109, 1266
AgsI	TTSAA	9 cut(s)	148, 171, 514, 676, 697, 716, 1151, 1283, 1367
AjiI	CACGTC	2 cut(s)	997, 1264
AjnI	CCWGG	1 cut(s)	568
AloI	GAACNNNNNNTCC	2 cut(s)	194, 226
AluBI	AGCT	7 cut(s)	100, 319, 404, 825, 1097, 1361, 1370
AluI	AGCT	7 cut(s)	100, 319, 404, 825, 1097, 1361, 1370
Alw21I	GWGCWC	1 cut(s)	1081
Alw26I	GTCTC	1 cut(s)	209
Alw44I	GTGCAC	1 cut(s)	1077
AlwI	GGATC	5 cut(s)	559, 572, 648, 661, 1393
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	4 cut(s)	67, 193, 769, 1184
ApaLI	GTGCAC	1 cut(s)	1077
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	4 cut(s)	523, 710, 1031, 1138
ArsI	GACNNNNNNTTYG	6 cut(s)	194, 226, 1019, 1051, 1198, 1230
Asp718I	GGTACC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	1272
AspS9I	GGNCC	5 cut(s)	176, 193, 305, 770, 1198
AsuHPI	GGTGA	3 cut(s)	334, 1019, 1264
AvaII	GGWCC	3 cut(s)	176, 305, 1198
BaeGI	GKGCMC	1 cut(s)	1081
BamHI	GGATCC	2 cut(s)	564, 653
BanI	GGYRCC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	1259
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	1081
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	67, 245, 371, 530, 1111
BceAI	ACGGC	2 cut(s)	50, 646
BciT130I	CCWGG	1 cut(s)	570
BcoDI	GTCTC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	1058
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	1 cut(s)	570
Bme18I	GGWCC	3 cut(s)	176, 305, 1198
BmgBI	CACGTC	2 cut(s)	997, 1264
BmgT120I	GGNCC	5 cut(s)	176, 193, 305, 770, 1198
BmiI	GGNNCC	5 cut(s)	256, 382, 566, 655, 772
BmrFI	CCNGG	1 cut(s)	570
BmsI	GCATC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	843
BpuEI	CTTGAG	3 cut(s)	94, 575, 805
BsaAI	YACGTR	1 cut(s)	892
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	568
BsaWI	WCCGGW	2 cut(s)	199, 424
BsaXI	ACNNNNNCTCC	4 cut(s)	419, 449, 1076, 1106
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 663, 1109, 1266
Bse1I	ACTGG	1 cut(s)	566
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	1 cut(s)	568
BseGI	GGATG	3 cut(s)	256, 1099, 1326
BseLI	CCNNNNNNNGG	4 cut(s)	65, 663, 1109, 1266
BseNI	ACTGG	1 cut(s)	566
BseRI	GAGGAG	1 cut(s)	1055
BseSI	GKGCMC	1 cut(s)	1081
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	1272
BshFI	GGCC	4 cut(s)	69, 195, 771, 1186
BshNI	GGYRCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	1081
BsiSI	CCGG	2 cut(s)	200, 425
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	4 cut(s)	65, 663, 1109, 1266
BsmAI	GTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	4 cut(s)	69, 195, 771, 1186
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	1081, 1259
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	5 cut(s)	330, 564, 653, 933, 1385
BspACI	CCGC	1 cut(s)	1196
BspANI	GGCC	4 cut(s)	69, 195, 771, 1186
BspEI	TCCGGA	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	1272
BspLI	GGNNCC	5 cut(s)	256, 382, 566, 655, 772
BspMI	ACCTGC	1 cut(s)	1058
BspPI	GGATC	5 cut(s)	559, 572, 648, 661, 1393
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	566
BssECI	CCNNGG	1 cut(s)	568
BssMI	GATC	5 cut(s)	330, 564, 653, 933, 1385
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	3 cut(s)	158, 671, 1130
Bst6I	CTCTTC	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	892
BstC8I	GCNNGC	5 cut(s)	39, 791, 954, 965, 1184
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	3 cut(s)	256, 1099, 1326
BstFNI	CGCG	1 cut(s)	1272
BstHHI	GCGC	1 cut(s)	1272
BstKTI	GATC	5 cut(s)	333, 567, 656, 936, 1388
BstMAI	GTCTC	1 cut(s)	209
BstMBI	GATC	5 cut(s)	330, 564, 653, 933, 1385
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 1367
BstNI	CCWGG	1 cut(s)	570
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	568
BstSLI	GKGCMC	1 cut(s)	1081
BstSNI	TACGTA	1 cut(s)	892
BstUI	CGCG	1 cut(s)	1272
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	2 cut(s)	564, 653
BstXI	CCANNNNNNTGG	2 cut(s)	561, 978
BstYI	RGATCY	2 cut(s)	564, 653
BsuRI	GGCC	4 cut(s)	69, 195, 771, 1186
BtrI	CACGTC	2 cut(s)	997, 1264
BtsCI	GGATG	3 cut(s)	256, 1099, 1326
BtsIMutI	CAGTG	1 cut(s)	1135
BveI	ACCTGC	1 cut(s)	1058
Cac8I	GCNNGC	5 cut(s)	39, 791, 954, 965, 1184
CfoI	GCGC	1 cut(s)	1272
Cfr13I	GGNCC	5 cut(s)	176, 193, 305, 770, 1198
Csp6I	GTAC	6 cut(s)	381, 469, 540, 889, 1219, 1393
CviQI	GTAC	6 cut(s)	381, 469, 540, 889, 1219, 1393
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	5 cut(s)	332, 566, 655, 935, 1387
DpnII	GATC	5 cut(s)	330, 564, 653, 933, 1385
DraI	TTTAAA	1 cut(s)	313
DraIII	CACNNNGTG	1 cut(s)	1130
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
Eco105I	TACGTA	1 cut(s)	892
Eco24I	GRGCYC	1 cut(s)	1259
Eco31I	GGTCTC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	598
Eco47I	GGWCC	3 cut(s)	176, 305, 1198
Eco57I	CTGAAG	1 cut(s)	366
EcoO109I	RGGNCCY	2 cut(s)	176, 193
EcoRI	GAATTC	1 cut(s)	1138
EcoRII	CCWGG	1 cut(s)	568
EcoRV	GATATC	1 cut(s)	598
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	1259
FaqI	GGGAC	1 cut(s)	35
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	3 cut(s)	263, 1086, 1333
FriOI	GRGCYC	1 cut(s)	1259
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	1 cut(s)	1271
GluI	GCNGC	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	69, 195, 771, 1186
HapII	CCGG	2 cut(s)	200, 425
HhaI	GCGC	1 cut(s)	1272
Hin6I	GCGC	1 cut(s)	1270
HinP1I	GCGC	1 cut(s)	1270
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	98, 823
HinfI	GANTC	3 cut(s)	182, 281, 1010
HpaII	CCGG	2 cut(s)	200, 425
HphI	GGTGA	3 cut(s)	334, 1019, 1264
Hpy166II	GTNNAC	3 cut(s)	136, 889, 1079
Hpy188I	TCNGA	3 cut(s)	244, 346, 658
Hpy188III	TCNNGA	5 cut(s)	179, 214, 224, 269, 425
Hpy8I	GTNNAC	3 cut(s)	136, 889, 1079
Hpy99I	CGWCG	4 cut(s)	916, 1031, 1265, 1277
HpyAV	CCTTC	2 cut(s)	249, 1301
HpyCH4III	ACNGT	3 cut(s)	158, 671, 1130
HpyCH4IV	ACGT	5 cut(s)	434, 496, 891, 996, 1263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 1367
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	5 cut(s)	434, 496, 891, 996, 1263
HspAI	GCGC	1 cut(s)	1270
Kpn2I	TCCGGA	1 cut(s)	424
KpnI	GGTACC	1 cut(s)	384
Kzo9I	GATC	5 cut(s)	330, 564, 653, 933, 1385
LmnI	GCTCC	2 cut(s)	396, 1084
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	75
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	5 cut(s)	434, 496, 891, 996, 1263
MaeIII	GTNAC	9 cut(s)	73, 278, 322, 358, 430, 605, 810, 907, 1007
MalI	GATC	5 cut(s)	332, 566, 655, 935, 1387
MboI	GATC	5 cut(s)	330, 564, 653, 933, 1385
MboII	GAAGA	6 cut(s)	95, 672, 685, 848, 1336, 1363
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	564, 653
MhlI	GDGCHC	2 cut(s)	1081, 1259
MlyI	GAGTC	3 cut(s)	176, 275, 1004
MmeI	TCCRAC	2 cut(s)	1115, 1360
Mph1103I	ATGCAT	1 cut(s)	534
MroI	TCCGGA	1 cut(s)	424
MslI	CAYNNNNRTG	1 cut(s)	976
MspI	CCGG	2 cut(s)	200, 425
MspR9I	CCNGG	1 cut(s)	570
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	1 cut(s)	1272
MwoI	GCNNNNNNNGC	2 cut(s)	790, 1367
NdeII	GATC	5 cut(s)	330, 564, 653, 933, 1385
NlaIV	GGNNCC	5 cut(s)	256, 382, 566, 655, 772
NmuCI	GTSAC	6 cut(s)	278, 322, 430, 605, 810, 1007
NsiI	ATGCAT	1 cut(s)	534
NspI	RCATGY	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	41
PcsI	WCGNNNNNNNCGW	1 cut(s)	1269
PctI	GAATGC	1 cut(s)	420
PflMI	CCANNNNNTGG	1 cut(s)	1109
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	3 cut(s)	176, 275, 1004
PpsI	GAGTC	3 cut(s)	176, 275, 1004
Ppu21I	YACGTR	1 cut(s)	892
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PspN4I	GGNNCC	5 cut(s)	256, 382, 566, 655, 772
PspPI	GGNCC	5 cut(s)	176, 193, 305, 770, 1198
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	564, 653
RsaI	GTAC	6 cut(s)	382, 470, 541, 890, 1220, 1394
RsaNI	GTAC	6 cut(s)	381, 469, 540, 889, 1219, 1393
RseI	CAYNNNNRTG	1 cut(s)	976
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	5 cut(s)	330, 564, 653, 933, 1385
Sau96I	GGNCC	5 cut(s)	176, 193, 305, 770, 1198
SchI	GAGTC	3 cut(s)	176, 275, 1004
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	1081, 1259
SfaNI	GCATC	1 cut(s)	75
SinI	GGWCC	3 cut(s)	176, 305, 1198
SmiMI	CAYNNNNRTG	1 cut(s)	976
SmlI	CTYRAG	3 cut(s)	109, 590, 820
SmoI	CTYRAG	3 cut(s)	109, 590, 820
SnaBI	TACGTA	1 cut(s)	892
SphI	GCATGC	1 cut(s)	41
SsiI	CCGC	1 cut(s)	1196
SspI	AATATT	2 cut(s)	583, 738
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	3 cut(s)	158, 671, 1130
TaiI	ACGT	5 cut(s)	437, 499, 894, 999, 1266
TaqI	TCGA	3 cut(s)	213, 546, 936
TscAI	CASTG	1 cut(s)	1135
TseFI	GTSAC	6 cut(s)	278, 322, 430, 605, 810, 1007
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	6 cut(s)	278, 322, 430, 605, 810, 1007
TspDTI	ATGAA	5 cut(s)	451, 517, 590, 637, 1337
TspGWI	ACGGA	4 cut(s)	155, 175, 274, 679
TspRI	CASTG	1 cut(s)	1135
Van91I	CCANNNNNTGG	1 cut(s)	1109
VneI	GTGCAC	1 cut(s)	1077
VpaK11BI	GGWCC	3 cut(s)	176, 305, 1198
XapI	RAATTY	4 cut(s)	523, 710, 1031, 1138
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	408
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.