Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

9794842 .. 9796734

Gene Structure 1893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGATGAGTTCGGTAGAAAAAGCAACCAAAAAACTGCATGCAGTTTTAGTCCCATTCCCAGCACAAGGCCATGTTCACCCCGTGATGCAATTAGCCAAGCTTCTTCACTCAAAGGGCTTCCACATAACCTTTATCAACACCGAGTTCAACCACAACCGTTTAATTCGATCTAAAGGTCCCGACTCCGTTAAGGGTCTTCCAGACTTTGTGTTCGAGACCATACCGGACGGGTTGCCCCCTTCGGATAAGGATGGAACCCAAGATATTCCAGCTTTATGTGACTCCATTAAGAAAATTTGTCTTGGCCCATTTAAAGAACTGGTGAAGAAGATCAACACCACATCTCAAGTGCCACAAGTTACGTGTATAATTGCAGATGGTGTCATGGGCTTTGGGAGACAAGCTGCTCAAGAATTAGGCATTCCAGAGGTTCAATTTTGGACTGCCTCTGCTTGTGGCTTCATGGGGTACTTGCAATACGGTGAACTCATCAAACGTGGCATCATTCCGTTCAAAGATGGGAATTTCATGCATGATGGCACACTCGATACACCAATTGATTGGATCCCAGGCATGAGAAATGTTCGGCTCAAGGACATCCCGAGTTTCATTAGAGTTACTGATCTCAACGACATAATGTTTAATTTCATGGGATCCGAAGTATGGAGCTGTTTGAACTCTTCTGCAATCATCTTCAACACATTTGACGAATTCGAACACGAAGTGTTAGAGGTAATATCGACAATGTTCCCCAACATTTACACCATTGGCCCCCTTAATTTGCTTGGTAGGCATTTCCCCGAAAACAGTTTGGTCAAGTCACTTAACTCAAGCTTATGGAAAGAAGACACAAAATGTTTGGAATGGCTTGATAAAAAGAAACCCAATTCAGTTGTGTACGCAAATTATGGATGCATAACGACGATGACTGACCAACATTTGATCGAGTTTGCCTGGGGGCTAGCAAATAGCAAGCACCCATTTTTGTGGATAGTTAGGGCTGATGTGTTAAAGGGTGACTTACCAATTTTACCCGATGAATTTTTTGACGAGATTAAGGATAGGGGTTATATTGCAAGTTGGTGTGCACAGGAGCAAGTGTTAGCTCATCCATCTGTTGGGGTTTTCCTAACACACAGTGGTTGGAATTCTACCATTGAAACTATATCTCATGGTGTGCCTGTAATTTGTTGGCCTTTCTTTGCAGAGCAACAAACGAATTGTCTGTACTCATGCACAACGTGGGAAATTGGAATGGAGCTGAGCCCCGATGTGAAGCGCCACGAAATTGAAGCACTTGTTAAGGAAATGCTAGAAGGAGAAGGGGGGATGAAGATTAGGGGAAAAGCAAAGGAATGGAAGAAAAAAGCCGTTGAAGCTACTGATGTTGGAGGATCATCGTACAATAATATTGAGAGATTGTTTAAGGAGGCACTCCAACTTGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

484

Amino Acids

54.3

Weight (kDa)

5.72

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	14 - 58	7.5e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	105 - 439	1.4e-21	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1118
AclWI	GGATC	5 cut(s)	559, 572, 648, 661, 1402
AcsI	RAATTY	5 cut(s)	294, 523, 710, 1040, 1147
AdeI	CACNNNGTG	4 cut(s)	82, 724, 1139, 1242
AfaI	GTAC	4 cut(s)	470, 899, 1229, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	65, 663, 1118
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	8 cut(s)	148, 434, 514, 676, 697, 1160, 1292, 1376
AjnI	CCWGG	2 cut(s)	568, 953
AluBI	AGCT	8 cut(s)	100, 272, 404, 669, 834, 1106, 1261, 1379
AluI	AGCT	8 cut(s)	100, 272, 404, 669, 834, 1106, 1261, 1379
Alw21I	GWGCWC	1 cut(s)	1090
Alw26I	GTCTC	2 cut(s)	209, 391
Alw44I	GTGCAC	1 cut(s)	1086
AlwI	GGATC	5 cut(s)	559, 572, 648, 661, 1402
Ama87I	CYCGRG	1 cut(s)	601
AoxI	GGCC	4 cut(s)	67, 304, 769, 1193
ApaLI	GTGCAC	1 cut(s)	1086
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	5 cut(s)	294, 523, 710, 1040, 1147
ArsI	GACNNNNNNTTYG	4 cut(s)	194, 226, 1207, 1239
AspLEI	GCGC	1 cut(s)	1281
AspS9I	GGNCC	3 cut(s)	176, 305, 770
AsuHPI	GGTGA	4 cut(s)	68, 334, 494, 1028
AsuII	TTCGAA	1 cut(s)	714
AsuNHI	GCTAGC	1 cut(s)	961
AvaI	CYCGRG	1 cut(s)	601
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	1090
BamHI	GGATCC	2 cut(s)	564, 653
BanII	GRGCYC	1 cut(s)	1268
BbsI	GAAGAC	2 cut(s)	188, 852
Bbv12I	GWGCWC	1 cut(s)	1090
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	245, 371, 512, 530, 1120
BceAI	ACGGC	1 cut(s)	1355
BciT130I	CCWGG	2 cut(s)	570, 955
BcoDI	GTCTC	2 cut(s)	209, 391
BfaI	CTAG	2 cut(s)	962, 1313
BfoI	RGCGCY	1 cut(s)	1282
BisI	GCNGC	1 cut(s)	405
BlpI	GCTNAGC	1 cut(s)	1262
BlsI	GCNGC	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	570, 955
Bme18I	GGWCC	1 cut(s)	176
BmeT110I	CYCGRG	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	176, 305, 770
BmiI	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
BmrFI	CCNGG	2 cut(s)	570, 955
BmsI	GCATC	3 cut(s)	75, 510, 902
BmtI	GCTAGC	1 cut(s)	965
BpiI	GAAGAC	2 cut(s)	188, 852
Bpu1102I	GCTNAGC	1 cut(s)	1262
Bpu14I	TTCGAA	1 cut(s)	714
BpuEI	CTTGAG	4 cut(s)	330, 393, 575, 814
BsaAI	YACGTR	1 cut(s)	363
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	568, 954
BsaWI	WCCGGW	1 cut(s)	223
BsaXI	ACNNNNNCTCC	2 cut(s)	1085, 1115
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 663, 1118
Bse1I	ACTGG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	570, 955
BseDI	CCNNGG	2 cut(s)	568, 954
BseGI	GGATG	5 cut(s)	256, 597, 917, 1108, 1335
BseLI	CCNNNNNNNGG	3 cut(s)	65, 663, 1118
BseMII	CTCAG	1 cut(s)	1253
BseNI	ACTGG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	1090
BseXI	GCAGC	1 cut(s)	391
BseYI	CCCAGC	1 cut(s)	58
BshFI	GGCC	4 cut(s)	69, 306, 771, 1195
BsiHKAI	GWGCWC	1 cut(s)	1090
BsiHKCI	CYCGRG	1 cut(s)	601
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	2 cut(s)	35, 162
BslI	CCNNNNNNNGG	3 cut(s)	65, 663, 1118
BsmAI	GTCTC	2 cut(s)	209, 391
BsmFI	GGGAC	2 cut(s)	35, 162
BsmI	GAATGC	1 cut(s)	420
BsnI	GGCC	4 cut(s)	69, 306, 771, 1195
Bso31I	GGTCTC	1 cut(s)	209
BsoBI	CYCGRG	1 cut(s)	601
Bsp119I	TTCGAA	1 cut(s)	714
Bsp1286I	GDGCHC	2 cut(s)	1090, 1268
Bsp143I	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
Bsp1720I	GCTNAGC	1 cut(s)	1262
BspANI	GGCC	4 cut(s)	69, 306, 771, 1195
BspCNI	CTCAG	1 cut(s)	1254
BspLI	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
BspOI	GCTAGC	1 cut(s)	965
BspPI	GGATC	5 cut(s)	559, 572, 648, 661, 1402
BspT104I	TTCGAA	1 cut(s)	714
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	568, 954
BssMI	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
Bst2UI	CCWGG	2 cut(s)	570, 955
Bst4CI	ACNGT	4 cut(s)	158, 482, 809, 1139
Bst6I	CTCTTC	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	363
BstBI	TTCGAA	1 cut(s)	714
BstC8I	GCNNGC	3 cut(s)	39, 963, 974
BstDEI	CTNAG	1 cut(s)	1262
BstF5I	GGATG	5 cut(s)	256, 597, 917, 1108, 1335
BstH2I	RGCGCY	1 cut(s)	1282
BstHHI	GCGC	1 cut(s)	1281
BstKTI	GATC	7 cut(s)	170, 333, 567, 625, 656, 945, 1397
BstMAI	GTCTC	2 cut(s)	209, 391
BstMBI	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
BstMWI	GCNNNNNNNGC	2 cut(s)	790, 1376
BstNI	CCWGG	2 cut(s)	570, 955
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	2 cut(s)	568, 953
BstSLI	GKGCMC	1 cut(s)	1090
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	2 cut(s)	188, 852
BstX2I	RGATCY	2 cut(s)	564, 653
BstXI	CCANNNNNNTGG	2 cut(s)	561, 987
BstYI	RGATCY	2 cut(s)	564, 653
BsuRI	GGCC	4 cut(s)	69, 306, 771, 1195
BtsCI	GGATG	5 cut(s)	256, 597, 917, 1108, 1335
BtsIMutI	CAGTG	1 cut(s)	1144
Cac8I	GCNNGC	3 cut(s)	39, 963, 974
CfoI	GCGC	1 cut(s)	1281
Cfr13I	GGNCC	3 cut(s)	176, 305, 770
Csp6I	GTAC	4 cut(s)	469, 898, 1228, 1402
CviQI	GTAC	4 cut(s)	469, 898, 1228, 1402
DdeI	CTNAG	1 cut(s)	1262
DpnI	GATC	7 cut(s)	169, 332, 566, 624, 655, 944, 1396
DpnII	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
DraI	TTTAAA	1 cut(s)	313
DraIII	CACNNNGTG	4 cut(s)	82, 724, 1139, 1242
Eam1104I	CTCTTC	1 cut(s)	685
EarI	CTCTTC	1 cut(s)	685
Eco24I	GRGCYC	1 cut(s)	1268
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	176
Eco88I	CYCGRG	1 cut(s)	601
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	710, 1147
EcoRII	CCWGG	2 cut(s)	568, 953
EcoT22I	ATGCAT	2 cut(s)	534, 917
EcoT38I	GRGCYC	1 cut(s)	1268
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	2 cut(s)	35, 162
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	5 cut(s)	263, 584, 924, 1095, 1342
FriOI	GRGCYC	1 cut(s)	1268
Fsp4HI	GCNGC	1 cut(s)	405
FspBI	CTAG	2 cut(s)	962, 1313
GlaI	GCGC	1 cut(s)	1280
GluI	GCNGC	1 cut(s)	405
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	1282
HaeIII	GGCC	4 cut(s)	69, 306, 771, 1195
HapII	CCGG	1 cut(s)	224
HhaI	GCGC	1 cut(s)	1281
Hin6I	GCGC	1 cut(s)	1279
HinP1I	GCGC	1 cut(s)	1279
HindIII	AAGCTT	2 cut(s)	98, 832
HinfI	GANTC	2 cut(s)	182, 281
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	4 cut(s)	68, 334, 494, 1028
Hpy166II	GTNNAC	4 cut(s)	76, 485, 898, 1088
Hpy188I	TCNGA	2 cut(s)	244, 658
Hpy188III	TCNNGA	6 cut(s)	179, 200, 214, 410, 425, 601
Hpy8I	GTNNAC	4 cut(s)	76, 485, 898, 1088
Hpy99I	CGWCG	1 cut(s)	925
HpyAV	CCTTC	3 cut(s)	249, 1310, 1316
HpyCH4III	ACNGT	4 cut(s)	158, 482, 809, 1139
HpyCH4IV	ACGT	3 cut(s)	362, 496, 1241
HpyF10VI	GCNNNNNNNGC	2 cut(s)	790, 1376
HpyF3I	CTNAG	1 cut(s)	1262
HpySE526I	ACGT	3 cut(s)	362, 496, 1241
HspAI	GCGC	1 cut(s)	1279
Kzo9I	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
LmnI	GCTCC	3 cut(s)	666, 1093, 1258
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	3 cut(s)	75, 510, 902
MaeI	CTAG	2 cut(s)	962, 1313
MaeII	ACGT	3 cut(s)	362, 496, 1241
MaeIII	GTNAC	5 cut(s)	278, 358, 616, 819, 1016
MalI	GATC	7 cut(s)	169, 332, 566, 624, 655, 944, 1396
MboI	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
MboII	GAAGA	9 cut(s)	95, 188, 337, 340, 672, 685, 857, 1345, 1372
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	2 cut(s)	564, 653
MhlI	GDGCHC	2 cut(s)	1090, 1268
MlyI	GAGTC	2 cut(s)	176, 275
MmeI	TCCRAC	2 cut(s)	1124, 1369
MnlI	CCTC	5 cut(s)	421, 457, 724, 1385, 1423
Mph1103I	ATGCAT	2 cut(s)	534, 917
MslI	CAYNNNNRTG	1 cut(s)	985
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	2 cut(s)	570, 955
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	570, 955
MwoI	GCNNNNNNNGC	2 cut(s)	790, 1376
NdeII	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
NheI	GCTAGC	1 cut(s)	961
NlaIV	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
NmuCI	GTSAC	3 cut(s)	278, 819, 1016
NsiI	ATGCAT	2 cut(s)	534, 917
NspI	RCATGY	1 cut(s)	41
NspV	TTCGAA	1 cut(s)	714
PaeI	GCATGC	1 cut(s)	41
PctI	GAATGC	1 cut(s)	420
PflMI	CCANNNNNTGG	1 cut(s)	1118
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	2 cut(s)	176, 275
PpsI	GAGTC	2 cut(s)	176, 275
Ppu21I	YACGTR	1 cut(s)	363
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	2 cut(s)	568, 953
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	2 cut(s)	568, 953
PspN4I	GGNNCC	5 cut(s)	178, 256, 566, 655, 772
PspPI	GGNCC	3 cut(s)	176, 305, 770
PspPPI	RGGWCCY	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	564, 653
RsaI	GTAC	4 cut(s)	470, 899, 1229, 1403
RsaNI	GTAC	4 cut(s)	469, 898, 1228, 1402
RseI	CAYNNNNRTG	1 cut(s)	985
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	7 cut(s)	167, 330, 564, 622, 653, 942, 1394
Sau96I	GGNCC	3 cut(s)	176, 305, 770
SchI	GAGTC	2 cut(s)	176, 275
ScrFI	CCNGG	2 cut(s)	570, 955
SduI	GDGCHC	2 cut(s)	1090, 1268
SfaNI	GCATC	3 cut(s)	75, 510, 902
SfuI	TTCGAA	1 cut(s)	714
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	985
SmlI	CTYRAG	4 cut(s)	345, 408, 590, 829
SmoI	CTYRAG	4 cut(s)	345, 408, 590, 829
SphI	GCATGC	1 cut(s)	41
SspI	AATATT	1 cut(s)	1411
SspMI	CTAG	2 cut(s)	962, 1313
StyD4I	CCNGG	2 cut(s)	568, 953
TaaI	ACNGT	4 cut(s)	158, 482, 809, 1139
TaiI	ACGT	3 cut(s)	365, 499, 1244
TaqI	TCGA	6 cut(s)	166, 213, 546, 714, 740, 945
TatI	WGTACW	1 cut(s)	1227
TscAI	CASTG	1 cut(s)	1144
TseFI	GTSAC	3 cut(s)	278, 819, 1016
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	3 cut(s)	278, 819, 1016
TspDTI	ATGAA	6 cut(s)	451, 517, 598, 637, 1053, 1346
TspGWI	ACGGA	2 cut(s)	175, 498
TspRI	CASTG	1 cut(s)	1144
Van91I	CCANNNNNTGG	1 cut(s)	1118
VneI	GTGCAC	1 cut(s)	1086
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	5 cut(s)	294, 523, 710, 1040, 1147
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	2 cut(s)	962, 1313
Zsp2I	ATGCAT	2 cut(s)	534, 917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.