Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

24810455 .. 24811312

Gene Structure 858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g21770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAAAAATGTTCGACTCAAGGACATCCCGAGTTTCATTAGAGTTACTGATCTCAGCGACATATTGTTTAATTACTTGGGATCCGAGGCACGAAGCTGTTTGAACTCTTCTGCAATCCTCTTCAACACATTTGATGAATTTGAACACGAAGTGTTAGAGGGAATATCGATAATGTTTCCCAACATTTACACCATTGGCCCCCTTAATTTGCTGGGCAGGCATTTCCCTGAAAGCAAGTCACTTAACTCAAACTTATGGAAAGAAGATGCAAAATGTTCGGAATGGCTTGATAAAAAGAAACCCAATTCAGTTGTGTATGTAAATTATGGCAGCATAACGATGATGACAGACCAACATTTAGTCGAGTTTGCATGGGGGCTGGCAAATAGTAAGCAACCATTTTTATGGATAGTTAGGGCTGACGTGGTAAAAGGTGACTCACCAATTTTACCTGATGAATTTTTTGAGGAGATTAAGGATAGGGGTTATATTGCAGGTTGGTGTGCACAAGACCAAGTGTTAGCTCATCCATCTGTTGGGGTTTTCCTAACACATAGTGGTTGGAATTCTACCATTGAAAGTATATCTCACGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCGGAGCAACAAACAAATTGTCGGTACTCATGCACAACGTGGGAGATTGGAATGGAGGTGAGCCCCGATGTGAAGCGTGACGAAATAGAAGCACTTGTTAAGGAAATGATGGAAGGAGAAGGAGGGATAAAGAAGAGGGAAAAGGCAAAGGAATGGAAGAAAAAAGCTATTGAAGCTACTGATGTTGTAGGATCATCGTACAATAATTTTGAGAGATTGTTTAAGGAGGTACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

286

Amino Acids

32.53

Weight (kDa)

5.21

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	101 - 246	4.5e-24	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB7I	CCANNNNNTGG	1 cut(s)	536
AciI	CCGC	1 cut(s)	623
AclWI	GGATC	3 cut(s)	75, 88, 820
AcsI	RAATTY	3 cut(s)	137, 458, 565
AdeI	CACNNNGTG	4 cut(s)	151, 557, 595, 660
AfaI	GTAC	3 cut(s)	647, 821, 852
AfiI	CCNNNNNNNGG	1 cut(s)	536
AgsI	TTSAA	5 cut(s)	103, 124, 143, 578, 794
AjiI	CACGTC	1 cut(s)	424
AluBI	AGCT	4 cut(s)	96, 524, 788, 797
AluI	AGCT	4 cut(s)	96, 524, 788, 797
Alw21I	GWGCWC	1 cut(s)	508
Alw44I	GTGCAC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	75, 88, 820
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	196, 611
ApaLI	GTGCAC	1 cut(s)	504
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	3 cut(s)	137, 458, 565
ArsI	GACNNNNNNTTYG	2 cut(s)	625, 657
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	3 cut(s)	432, 446, 691
AvaI	CYCGRG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	508
BamHI	GGATCC	1 cut(s)	80
BanII	GRGCYC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	538, 724
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BfuAI	ACCTGC	1 cut(s)	485
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	28
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	82, 199
BmsI	GCATC	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	167
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	536
BseCI	ATCGAT	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	2 cut(s)	24, 526
BseLI	CCNNNNNNNGG	1 cut(s)	536
BseMII	CTCAG	1 cut(s)	67
BseRI	GAGGAG	1 cut(s)	482
BseSI	GKGCMC	1 cut(s)	508
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	211
BshFI	GGCC	2 cut(s)	198, 613
BshVI	ATCGAT	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	508
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	1 cut(s)	536
BsnI	GGCC	2 cut(s)	198, 613
BsoBI	CYCGRG	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	508, 686
Bsp143I	GATC	3 cut(s)	49, 80, 812
BspACI	CCGC	1 cut(s)	623
BspANI	GGCC	2 cut(s)	198, 613
BspCNI	CTCAG	1 cut(s)	66
BspDI	ATCGAT	1 cut(s)	167
BspLI	GGNNCC	2 cut(s)	82, 199
BspMI	ACCTGC	1 cut(s)	485
BspPI	GGATC	3 cut(s)	75, 88, 820
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	49, 80, 812
Bst4CI	ACNGT	1 cut(s)	593
Bst6I	CTCTTC	3 cut(s)	112, 125, 749
BstC8I	GCNNGC	3 cut(s)	218, 381, 611
BstDEI	CTNAG	1 cut(s)	53
BstF5I	GGATG	2 cut(s)	24, 526
BstKTI	GATC	3 cut(s)	52, 83, 815
BstMBI	GATC	3 cut(s)	49, 80, 812
BstMWI	GCNNNNNNNGC	2 cut(s)	217, 794
BstSLI	GKGCMC	1 cut(s)	508
BstV1I	GCAGC	1 cut(s)	342
BstX2I	RGATCY	1 cut(s)	80
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	198, 613
BsuTUI	ATCGAT	1 cut(s)	167
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	24, 526
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	3 cut(s)	218, 381, 611
Cfr13I	GGNCC	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	646, 820, 851
CviAII	CATG	2 cut(s)	372, 651
CviQI	GTAC	3 cut(s)	646, 820, 851
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	3 cut(s)	51, 82, 814
DpnII	GATC	3 cut(s)	49, 80, 812
DraIII	CACNNNGTG	4 cut(s)	151, 557, 595, 660
Eam1104I	CTCTTC	3 cut(s)	112, 125, 749
EarI	CTCTTC	3 cut(s)	112, 125, 749
Eco24I	GRGCYC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	28
EcoRI	GAATTC	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	686
FaeI	CATG	2 cut(s)	375, 654
FatI	CATG	2 cut(s)	371, 650
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	2 cut(s)	11, 513
FriOI	GRGCYC	1 cut(s)	686
Fsp4HI	GCNGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	198, 613
Hin1II	CATG	2 cut(s)	375, 654
HinfI	GANTC	2 cut(s)	15, 437
HphI	GGTGA	3 cut(s)	432, 446, 691
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	2 cut(s)	85, 280
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	2 cut(s)	728, 734
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	2 cut(s)	423, 659
HpyCH4V	TGCA	6 cut(s)	113, 269, 371, 494, 506, 654
HpyF10VI	GCNNNNNNNGC	2 cut(s)	217, 794
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	423, 659
Hsp92II	CATG	2 cut(s)	375, 654
Kzo9I	GATC	3 cut(s)	49, 80, 812
LmnI	GCTCC	1 cut(s)	625
LpnPI	CCDG	8 cut(s)	197, 202, 240, 365, 465, 480, 595, 612
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	256
MaeII	ACGT	2 cut(s)	423, 659
MaeIII	GTNAC	4 cut(s)	43, 237, 434, 698
MalI	GATC	3 cut(s)	51, 82, 814
MboI	GATC	3 cut(s)	49, 80, 812
MboII	GAAGA	5 cut(s)	99, 112, 275, 766, 790
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	508, 686
MlyI	GAGTC	2 cut(s)	9, 431
MmeI	TCCRAC	1 cut(s)	542
MnlI	CCTC	8 cut(s)	79, 128, 151, 460, 670, 737, 750, 841
MseI	TTAA	6 cut(s)	69, 204, 243, 474, 720, 843
MslI	CAYNNNNRTG	2 cut(s)	338, 403
MwoI	GCNNNNNNNGC	2 cut(s)	217, 794
NdeII	GATC	3 cut(s)	49, 80, 812
NlaIII	CATG	2 cut(s)	375, 654
NlaIV	GGNNCC	2 cut(s)	82, 199
NmuCI	GTSAC	3 cut(s)	237, 434, 698
PflMI	CCANNNNNTGG	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	2 cut(s)	9, 431
PpsI	GAGTC	2 cut(s)	9, 431
PspFI	CCCAGC	1 cut(s)	211
PspN4I	GGNNCC	2 cut(s)	82, 199
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	3 cut(s)	647, 821, 852
RsaNI	GTAC	3 cut(s)	646, 820, 851
RseI	CAYNNNNRTG	2 cut(s)	338, 403
SaqAI	TTAA	6 cut(s)	69, 204, 243, 474, 720, 843
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	3 cut(s)	49, 80, 812
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	2 cut(s)	9, 431
SduI	GDGCHC	2 cut(s)	508, 686
SfaNI	GCATC	1 cut(s)	256
SmiMI	CAYNNNNRTG	2 cut(s)	338, 403
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SsiI	CCGC	1 cut(s)	623
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	2 cut(s)	426, 662
TaqI	TCGA	3 cut(s)	13, 167, 363
Tru1I	TTAA	6 cut(s)	69, 204, 243, 474, 720, 843
Tru9I	TTAA	6 cut(s)	69, 204, 243, 474, 720, 843
TseFI	GTSAC	3 cut(s)	237, 434, 698
TseI	GCWGC	1 cut(s)	330
Tsp45I	GTSAC	3 cut(s)	237, 434, 698
TspDTI	ATGAA	4 cut(s)	17, 25, 150, 471
Van91I	CCANNNNNTGG	1 cut(s)	536
VneI	GTGCAC	1 cut(s)	504
XapI	RAATTY	3 cut(s)	137, 458, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.