MD13G1080500.v1.1

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000867
Physical Location & Seq
Reverse (-)
5641651 .. 5647395
5745 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1080500.v1.1.491

Sequence Viewer

Length: 945 bp
ATGGGGTCTGTTCCATCAGGCACACCTCATCTCGTGTGCATTCCATTCCCCGCCCAAGGCCATGTCAACCCATTTATGCACCTGGCCAAGCTTCTTCACTCAAGAGGCTTTCACATAACCATGGTGTATACAGAGTTCAGCCACAGCCGCTTGCTCCAGTCCAAAGGGCTAGATGCAGTGAAGAACTCCCTGGATTTTAGGTTCGAGACCATCCCTGACAGTGTCCCGCCTTCAAACCTGGATGCCACCAAGAGTGTCACTGAGCTTTTGTATTACACCAAGAAACACTTTGTGGTTCCGCTCCGGGATTTGATTGTGAAGCTCAATTCCACCGAGGGTTTGCCTAAGGTGAGTTGCATTATTTCAGATGGGATCATGAGGTTTGCAATAAAGGTGGCCCATGAGCTTAGAATTCTGGAGGTTCAGTTCTGGACTGCGTCATCTTGTGACGAATCGGATCTTAGAGAAAATCCCAACCGTAAGGATGTTCCTCTTTTGGTTACAGATGAGAAAGATGTCACAAATGGACATCTGGAAAAGACTACCCTAGAGTGGATACTCGGAATGAAACACATGCGACTCAAGGACATGCCCAACTTCGTCCGGAGCACCGACCTTGACGACATTGCCTTCAACCGGTGCCTTAAAGAAGCCCAAGACATCCTCACCACCGATGTCATTGTCTTCAACACCTTCTATGAGTTTGAATCTGAGGTCCTAGACACGGTCTCCGCCATGTTCTCCAACATCTACAACCTCAGTTTCCTCAACACCCTCTGCAGTAGCCTCCTTCAAACTGAAACAAACTCCCGAAGGCCGAGCCTGTGGGAGGAGAACACTGAGTGCCTCGCGTGGCTGGACACGCAAAAACCCAACTCCATCGTGTACTTGAACTTTGGTAGCATCGCCATGATGATAGAGGACAACCTCAAAGAGTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UDPGT

Protein Analysis

315

Amino Acids

35.77

Weight (kDa)

5.39

Isoelectric Point (pI)

41.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 11 - 139 9.8e-09 Glycosyltransferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 639
AccBSI CCGCTC 1 cut(s) 301
AccI GTMKAC 1 cut(s) 128
AccII CGCG 1 cut(s) 851
AccIII TCCGGA 1 cut(s) 603
AciI CCGC 5 cut(s) 51, 148, 227, 299, 732
AclWI GGATC 2 cut(s) 380, 465
AcoI YGGCCR 1 cut(s) 84
AcsI RAATTY 1 cut(s) 411
AdeI CACNNNGTG 2 cut(s) 292, 843
AfaI GTAC 1 cut(s) 887
AfiI CCNNNNNNNGG 5 cut(s) 56, 552, 636, 724, 829
AgeI ACCGGT 1 cut(s) 636
AgsI TTSAA 6 cut(s) 234, 634, 688, 707, 794, 892
AjnI CCWGG 3 cut(s) 81, 189, 237
AloI GAACNNNNNNTCC 4 cut(s) 185, 217, 410, 442
AluBI AGCT 4 cut(s) 91, 265, 322, 406
AluI AGCT 4 cut(s) 91, 265, 322, 406
Alw21I GWGCWC 1 cut(s) 611
Alw26I GTCTC 2 cut(s) 200, 733
AlwI GGATC 2 cut(s) 380, 465
Aor13HI TCCGGA 1 cut(s) 603
AoxI GGCC 4 cut(s) 58, 84, 396, 815
ApoI RAATTY 1 cut(s) 411
AsiGI ACCGGT 1 cut(s) 636
AspS9I GGNCC 2 cut(s) 397, 715
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 361, 658
AvaII GGWCC 1 cut(s) 715
AxyI CCTNAGG 1 cut(s) 345
BalI TGGCCA 1 cut(s) 86
BanI GGYRCC 1 cut(s) 639
BauI CACGAG 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 611
BccI CCATC 4 cut(s) 22, 218, 362, 887
BciT130I CCWGG 3 cut(s) 83, 191, 239
BciVI GTATCC 1 cut(s) 549
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 200, 733
BfaI CTAG 3 cut(s) 170, 548, 719
BfmI CTRYAG 1 cut(s) 778
BfuI GTATCC 1 cut(s) 549
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 4 cut(s) 83, 191, 239, 305
Bme18I GGWCC 1 cut(s) 715
BmgT120I GGNCC 2 cut(s) 397, 715
BmiI GGNNCC 2 cut(s) 297, 641
BmrFI CCNGG 4 cut(s) 83, 191, 239, 305
BmsI GCATC 3 cut(s) 163, 232, 912
BpiI GAAGAC 1 cut(s) 676
BpmI CTGGAG 2 cut(s) 140, 437
BpuEI CTTGAG 2 cut(s) 85, 566
BpuMI CCSGG 1 cut(s) 305
BsaI GGTCTC 2 cut(s) 200, 733
BsaJI CCNNGG 4 cut(s) 55, 120, 189, 333
BsaWI WCCGGW 2 cut(s) 603, 636
BsaXI ACNNNNNCTCC 4 cut(s) 410, 440, 713, 743
Bsc4I CCNNNNNNNGG 5 cut(s) 56, 552, 636, 724, 829
Bse118I RCCGGY 1 cut(s) 636
Bse1I ACTGG 1 cut(s) 157
Bse21I CCTNAGG 1 cut(s) 345
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 603
BseBI CCWGG 3 cut(s) 83, 191, 239
BseDI CCNNGG 4 cut(s) 55, 120, 189, 333
BseGI GGATG 4 cut(s) 210, 247, 490, 660
BseLI CCNNNNNNNGG 5 cut(s) 56, 552, 636, 724, 829
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 4 cut(s) 252, 702, 772, 831
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 845
Bsh1236I CGCG 1 cut(s) 851
BshFI GGCC 4 cut(s) 60, 86, 398, 817
BshNI GGYRCC 1 cut(s) 639
BshTI ACCGGT 1 cut(s) 636
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 3 cut(s) 304, 604, 637
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 5 cut(s) 56, 552, 636, 724, 829
BsmAI GTCTC 2 cut(s) 200, 733
BsmFI GGGAC 1 cut(s) 209
BsmI GAATGC 1 cut(s) 39
BsnI GGCC 4 cut(s) 60, 86, 398, 817
Bso31I GGTCTC 2 cut(s) 200, 733
Bsp1286I GDGCHC 1 cut(s) 611
Bsp13I TCCGGA 1 cut(s) 603
Bsp143I GATC 2 cut(s) 372, 457
Bsp19I CCATGG 1 cut(s) 120
BspACI CCGC 5 cut(s) 51, 148, 227, 299, 732
BspANI GGCC 4 cut(s) 60, 86, 398, 817
BspCNI CTCAG 4 cut(s) 253, 703, 771, 832
BspEI TCCGGA 1 cut(s) 603
BspFNI CGCG 1 cut(s) 851
BspHI TCATGA 1 cut(s) 375
BspLI GGNNCC 2 cut(s) 297, 641
BspMAI CTGCAG 1 cut(s) 782
BspPI GGATC 2 cut(s) 380, 465
BspT107I GGYRCC 1 cut(s) 639
BspTNI GGTCTC 2 cut(s) 200, 733
BsrBI CCGCTC 1 cut(s) 301
BsrDI GCAATG 1 cut(s) 624
BsrFI RCCGGY 1 cut(s) 636
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 636
BssECI CCNNGG 4 cut(s) 55, 120, 189, 333
BssMI GATC 2 cut(s) 372, 457
BssNAI GTATAC 1 cut(s) 129
BssSI CACGAG 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 55, 120
Bst1107I GTATAC 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 32
Bst2UI CCWGG 3 cut(s) 83, 191, 239
Bst4CI ACNGT 3 cut(s) 221, 479, 727
BstC8I GCNNGC 1 cut(s) 152
BstDEI CTNAG 7 cut(s) 261, 345, 407, 461, 711, 758, 840
BstDSI CCRYGG 1 cut(s) 120
BstENI CCTNNNNNAGG 1 cut(s) 827
BstF5I GGATG 4 cut(s) 210, 247, 490, 660
BstFNI CGCG 1 cut(s) 851
BstKTI GATC 2 cut(s) 375, 460
BstMAI GTCTC 2 cut(s) 200, 733
BstMBI GATC 2 cut(s) 372, 457
BstMWI GCNNNNNNNGC 2 cut(s) 147, 862
BstNI CCWGG 3 cut(s) 83, 191, 239
BstNSI RCATGY 2 cut(s) 577, 592
BstSCI CCNGG 4 cut(s) 81, 189, 237, 303
BstSFI CTRYAG 1 cut(s) 778
BstUI CGCG 1 cut(s) 851
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 1 cut(s) 457
BstYI RGATCY 1 cut(s) 457
BstZ17I GTATAC 1 cut(s) 129
Bsu36I CCTNAGG 1 cut(s) 345
BsuI GTATCC 1 cut(s) 549
BsuRI GGCC 4 cut(s) 60, 86, 398, 817
BtgI CCRYGG 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 889
BtsCI GGATG 4 cut(s) 210, 247, 490, 660
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 4 cut(s) 183, 226, 258, 837
Cac8I GCNNGC 1 cut(s) 152
CciI TCATGA 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 636
Cfr13I GGNCC 2 cut(s) 397, 715
CseI GACGC 1 cut(s) 426
Csp6I GTAC 1 cut(s) 886
CspAI ACCGGT 1 cut(s) 636
CspCI CAANNNNNGTGG 2 cut(s) 375, 410
CviAII CATG 9 cut(s) 62, 121, 376, 401, 574, 589, 736, 910, 942
CviQI GTAC 1 cut(s) 886
DdeI CTNAG 7 cut(s) 261, 345, 407, 461, 711, 758, 840
DpnI GATC 2 cut(s) 374, 459
DpnII GATC 2 cut(s) 372, 457
DraIII CACNNNGTG 2 cut(s) 292, 843
EaeI YGGCCR 1 cut(s) 84
EciI GGCGGA 1 cut(s) 721
Eco130I CCWWGG 2 cut(s) 55, 120
Eco31I GGTCTC 2 cut(s) 200, 733
Eco47I GGWCC 1 cut(s) 715
Eco81I CCTNAGG 1 cut(s) 345
EcoNI CCTNNNNNAGG 1 cut(s) 827
EcoO109I RGGNCCY 1 cut(s) 715
EcoRI GAATTC 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 81, 189, 237
EcoT14I CCWWGG 2 cut(s) 55, 120
ErhI CCWWGG 2 cut(s) 55, 120
FaeI CATG 9 cut(s) 65, 124, 379, 404, 577, 592, 739, 913, 945
FalI AAGNNNNNCTT 2 cut(s) 272, 304
FaqI GGGAC 1 cut(s) 209
FatI CATG 9 cut(s) 61, 120, 375, 400, 573, 588, 735, 909, 941
FauI CCCGC 2 cut(s) 58, 234
FblI GTMKAC 1 cut(s) 128
Fnu4HI GCNGC 1 cut(s) 148
FokI GGATG 4 cut(s) 197, 254, 497, 647
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 3 cut(s) 170, 548, 719
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 2 cut(s) 140, 437
HaeIII GGCC 4 cut(s) 60, 86, 398, 817
HapII CCGG 3 cut(s) 304, 604, 637
HgaI GACGC 1 cut(s) 426
Hin1II CATG 9 cut(s) 65, 124, 379, 404, 577, 592, 739, 913, 945
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 89
HinfI GANTC 3 cut(s) 452, 579, 707
HpaII CCGG 3 cut(s) 304, 604, 637
HphI GGTGA 2 cut(s) 361, 658
Hpy166II GTNNAC 3 cut(s) 67, 129, 886
Hpy188I TCNGA 4 cut(s) 367, 457, 563, 712
Hpy188III TCNNGA 8 cut(s) 102, 205, 376, 416, 430, 533, 604, 810
Hpy8I GTNNAC 3 cut(s) 67, 129, 886
HpyAV CCTTC 5 cut(s) 240, 640, 703, 800, 807
HpyCH4III ACNGT 3 cut(s) 221, 479, 727
HpyCH4V TGCA 7 cut(s) 39, 79, 176, 357, 386, 780, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 862
HpyF3I CTNAG 7 cut(s) 261, 345, 407, 461, 711, 758, 840
Hsp92II CATG 9 cut(s) 65, 124, 379, 404, 577, 592, 739, 913, 945
Kpn2I TCCGGA 1 cut(s) 603
Kzo9I GATC 2 cut(s) 372, 457
LmnI GCTCC 3 cut(s) 159, 306, 606
LweI GCATC 3 cut(s) 163, 232, 912
MaeI CTAG 3 cut(s) 170, 548, 719
MaeIII GTNAC 4 cut(s) 256, 446, 499, 517
MalI GATC 2 cut(s) 374, 459
MbiI CCGCTC 1 cut(s) 301
MboI GATC 2 cut(s) 372, 457
MboII GAAGA 3 cut(s) 86, 193, 676
MflI RGATCY 1 cut(s) 457
MhlI GDGCHC 1 cut(s) 611
MlsI TGGCCA 1 cut(s) 86
MluCI AATT 2 cut(s) 325, 411
MluNI TGGCCA 1 cut(s) 86
MlyI GAGTC 1 cut(s) 573
MmeI TCCRAC 1 cut(s) 768
Mox20I TGGCCA 1 cut(s) 86
MroI TCCGGA 1 cut(s) 603
MscI TGGCCA 1 cut(s) 86
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 2 cut(s) 119, 908
Msp20I TGGCCA 1 cut(s) 86
MspI CCGG 3 cut(s) 304, 604, 637
MspR9I CCNGG 4 cut(s) 83, 191, 239, 305
Mva1269I GAATGC 1 cut(s) 39
MvaI CCWGG 3 cut(s) 83, 191, 239
MvnI CGCG 1 cut(s) 851
MwoI GCNNNNNNNGC 2 cut(s) 147, 862
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 120
NdeII GATC 2 cut(s) 372, 457
NlaIII CATG 9 cut(s) 65, 124, 379, 404, 577, 592, 739, 913, 945
NlaIV GGNNCC 2 cut(s) 297, 641
NmeAIII GCCGAG 1 cut(s) 843
NmuCI GTSAC 3 cut(s) 256, 446, 517
NspI RCATGY 2 cut(s) 577, 592
PagI TCATGA 1 cut(s) 375
PctI GAATGC 1 cut(s) 39
PfeI GAWTC 2 cut(s) 452, 707
PflFI GACNNNGTC 3 cut(s) 221, 436, 725
PfoI TCCNGGA 1 cut(s) 303
PinAI ACCGGT 1 cut(s) 636
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 1 cut(s) 573
PpsI GAGTC 1 cut(s) 573
PpuMI RGGWCCY 1 cut(s) 715
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 81, 189, 237
PspGI CCWGG 3 cut(s) 81, 189, 237
PspN4I GGNNCC 2 cut(s) 297, 641
PspPI GGNCC 2 cut(s) 397, 715
PspPPI RGGWCCY 1 cut(s) 715
PsrI GAACNNNNNNTAC 2 cut(s) 119, 151
PstI CTGCAG 1 cut(s) 782
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 3 cut(s) 221, 436, 725
RsaI GTAC 1 cut(s) 887
RsaNI GTAC 1 cut(s) 886
RseI CAYNNNNRTG 2 cut(s) 119, 908
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 2 cut(s) 372, 457
Sau96I GGNCC 2 cut(s) 397, 715
SchI GAGTC 1 cut(s) 573
ScrFI CCNGG 4 cut(s) 83, 191, 239, 305
SduI GDGCHC 1 cut(s) 611
SfaNI GCATC 3 cut(s) 163, 232, 912
SfcI CTRYAG 1 cut(s) 778
SinI GGWCC 1 cut(s) 715
SmiMI CAYNNNNRTG 2 cut(s) 119, 908
SmlI CTYRAG 2 cut(s) 100, 581
SmoI CTYRAG 2 cut(s) 100, 581
Sse9I AATT 2 cut(s) 325, 411
SsiI CCGC 5 cut(s) 51, 148, 227, 299, 732
SspMI CTAG 3 cut(s) 170, 548, 719
StyD4I CCNGG 4 cut(s) 81, 189, 237, 303
StyI CCWWGG 2 cut(s) 55, 120
TaaI ACNGT 3 cut(s) 221, 479, 727
TaqI TCGA 1 cut(s) 204
TasI AATT 2 cut(s) 325, 411
TatI WGTACW 1 cut(s) 885
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 452, 707
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 4 cut(s) 183, 226, 265, 844
TseFI GTSAC 3 cut(s) 256, 446, 517
Tsp45I GTSAC 3 cut(s) 256, 446, 517
TspDTI ATGAA 1 cut(s) 581
TspRI CASTG 4 cut(s) 183, 226, 265, 844
Tth111I GACNNNGTC 3 cut(s) 221, 436, 725
VpaK11BI GGWCC 1 cut(s) 715
XagI CCTNNNNNAGG 1 cut(s) 827
XapI RAATTY 1 cut(s) 411
XceI RCATGY 2 cut(s) 577, 592
XmiI GTMKAC 1 cut(s) 128
XspI CTAG 3 cut(s) 170, 548, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.