Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000795.1

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

531901 .. 534649

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000795.1_g000117.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgcaagatggtacactcgatgagccaattgattggatcccaggcatgaggaatatgaggctcaaggacatccctagctttatcagagtcacttctgaagcacaacactgcttgaaatcctctgcaatcatcctcaacacgtttgacgaattggagcatgaagtgttagaagaaatctcagccatgtttcccaacatttacacaataggtccacttgctttgcttggtaggcatgggcccgaaagcaaattggtcaagtccctaagctcaggcttatggaaagaagacgcaaaatgcatcgaatggcttgacaaacagaaacctgattcggttgtgtatgtgaattatgggagcatagctatgatgacagaccaacatttgaaagaatttgcatgggggcttgcaaatagcaagcaccattttttgtggattgtcaggcctgatgttgtaaaaggtgattcggtagttttaccccaagaattttttgaggagataaaggataggggttacgtaacaagttggtgcccacaggagcaagtgctagcacatccatcagttggggtttttctaacacattgtggttggaattctatgattgaaactatatcggagggcgtgcctgtactttgctggcctttccgttccgagcaacttacgaattgccatttcctgtgtactgattggggaattggtatggaggtaaacaatgatgttaagtgcaatgagattgaagcacttgttaaggaaatgctagaaggggagaaaggcatgaagatgaggcaaaaggcagaggaatggaagaagaaagcaatagcagctactgacactggaggatcatcgtacaataattttgagagactgattaagcactcggaaccttatgtggtggggaaaggaaattggtggacaagtatgaggaatggggctcatagtgatgctaataagatgttgagaccgagttttggagagcttgggcattgttttccactgaaagggagtagcgggtttggaggagctcggactgttgctagtattttttcagaagcactcgaagatctacggcgaccactcccctcttatttcacagcccacttctctctctcccactcaaaccccacttcctctatccacatcaagcccaaatttgaaaacttttcactgaaaaagacaaccttttcagaccttgaggtttctggctcaaatggtgatttggactctagttctggttcaaatggtggttttatggatgggtttatctctgaagattcgtcgacttggcattctcctgtggaaagtgatgcttctaggaggacagtgttaccagctctgaaatcaccagatctgtatccggcagcaaatcaacagcaccgtagccttctgcaacgcaactactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

464

Amino Acids

52.04

Weight (kDa)

5.81

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	522
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	1271
AciI	CCGC	1 cut(s)	1002
AclWI	GGATC	3 cut(s)	31, 44, 841
AcsI	RAATTY	4 cut(s)	386, 479, 586, 1142
AcuI	CTGAAG	2 cut(s)	117, 1281
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	4 cut(s)	13, 624, 676, 842
AfiI	CCNNNNNNNGG	3 cut(s)	557, 962, 992
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	6 cut(s)	115, 382, 599, 731, 1148, 1230
AjnI	CCWGG	1 cut(s)	40
AluBI	AGCT	7 cut(s)	78, 267, 359, 818, 970, 1016, 1325
AluI	AGCT	7 cut(s)	78, 267, 359, 818, 970, 1016, 1325
Alw21I	GWGCWC	1 cut(s)	1018
Alw26I	GTCTC	2 cut(s)	850, 946
AlwI	GGATC	3 cut(s)	31, 44, 841
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	3 cut(s)	236, 437, 632
ApaI	GGGCCC	1 cut(s)	240
ApeKI	GCWGC	2 cut(s)	815, 1352
ApoI	RAATTY	4 cut(s)	386, 479, 586, 1142
AspS9I	GGNCC	3 cut(s)	209, 236, 237
AsuHPI	GGTGA	3 cut(s)	467, 1217, 1326
AsuNHI	GCTAGC	1 cut(s)	541
AvaII	GGWCC	1 cut(s)	209
BaeGI	GKGCMC	2 cut(s)	240, 527
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	522
BanII	GRGCYC	3 cut(s)	240, 928, 1018
BbsI	GAAGAC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	1018
BbvI	GCAGC	2 cut(s)	827, 1364
BccI	CCATC	3 cut(s)	2, 559, 1241
BceAI	ACGGC	1 cut(s)	1076
BciT130I	CCWGG	1 cut(s)	42
BciVI	GTATCC	1 cut(s)	1356
BcoDI	GTCTC	2 cut(s)	850, 946
BfaI	CTAG	6 cut(s)	75, 542, 752, 1029, 1218, 1305
BfuI	GTATCC	1 cut(s)	1356
BglII	AGATCT	2 cut(s)	1054, 1339
BisI	GCNGC	2 cut(s)	816, 1353
BlsI	GCNGC	2 cut(s)	817, 1354
Bme1390I	CCNGG	1 cut(s)	42
Bme18I	GGWCC	1 cut(s)	209
BmgT120I	GGNCC	3 cut(s)	209, 236, 237
BmiI	GGNNCC	4 cut(s)	38, 238, 524, 876
BmrFI	CCNGG	1 cut(s)	42
BmsI	GCATC	3 cut(s)	306, 925, 1288
BmtI	GCTAGC	1 cut(s)	545
BpiI	GAAGAC	1 cut(s)	291
BpmI	CTGGAG	1 cut(s)	849
Bpu10I	CCTNAGC	2 cut(s)	263, 268
BpuEI	CTTGAG	2 cut(s)	47, 1205
BsaAI	YACGTR	1 cut(s)	511
BsaBI	GATNNNNATC	1 cut(s)	1344
BsaI	GGTCTC	1 cut(s)	946
BsaJI	CCNNGG	1 cut(s)	40
Bsc4I	CCNNNNNNNGG	3 cut(s)	557, 962, 992
Bse1I	ACTGG	1 cut(s)	832
Bse3DI	GCAATG	1 cut(s)	727
Bse8I	GATNNNNATC	1 cut(s)	1344
BseBI	CCWGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	40
BseGI	GGATG	4 cut(s)	69, 129, 547, 1252
BseJI	GATNNNNATC	1 cut(s)	1344
BseLI	CCNNNNNNNGG	3 cut(s)	557, 962, 992
BseMI	GCAATG	1 cut(s)	727
BseMII	CTCAG	2 cut(s)	192, 282
BseNI	ACTGG	1 cut(s)	832
BseRI	GAGGAG	2 cut(s)	503, 1026
BseSI	GKGCMC	2 cut(s)	240, 527
BseXI	GCAGC	2 cut(s)	827, 1364
BshFI	GGCC	3 cut(s)	238, 439, 634
BshNI	GGYRCC	1 cut(s)	522
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiSI	CCGG	1 cut(s)	1349
BslFI	GGGAC	1 cut(s)	244
BslI	CCNNNNNNNGG	3 cut(s)	557, 962, 992
BsmAI	GTCTC	2 cut(s)	850, 946
BsmFI	GGGAC	1 cut(s)	244
BsmI	GAATGC	1 cut(s)	1279
BsnI	GGCC	3 cut(s)	238, 439, 634
Bso31I	GGTCTC	1 cut(s)	946
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	240, 527, 928, 1018
Bsp143I	GATC	4 cut(s)	36, 833, 1054, 1339
BspACI	CCGC	1 cut(s)	1002
BspANI	GGCC	3 cut(s)	238, 439, 634
BspCNI	CTCAG	2 cut(s)	191, 281
BspLI	GGNNCC	4 cut(s)	38, 238, 524, 876
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	3 cut(s)	31, 44, 841
BspT107I	GGYRCC	1 cut(s)	522
BspTNI	GGTCTC	1 cut(s)	946
BsrDI	GCAATG	1 cut(s)	727
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	4 cut(s)	36, 833, 1054, 1339
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	3 cut(s)	1024, 1315, 1370
BstBAI	YACGTR	1 cut(s)	511
BstC8I	GCNNGC	5 cut(s)	402, 413, 543, 617, 632
BstDEI	CTNAG	3 cut(s)	178, 263, 268
BstF5I	GGATG	4 cut(s)	69, 129, 547, 1252
BstKTI	GATC	4 cut(s)	39, 836, 1057, 1342
BstMAI	GTCTC	2 cut(s)	850, 946
BstMBI	GATC	4 cut(s)	36, 833, 1054, 1339
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 815
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstSLI	GKGCMC	2 cut(s)	240, 527
BstSNI	TACGTA	1 cut(s)	511
BstV1I	GCAGC	2 cut(s)	827, 1364
BstV2I	GAAGAC	1 cut(s)	291
BstX2I	RGATCY	3 cut(s)	36, 1054, 1339
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	3 cut(s)	36, 1054, 1339
BsuI	GTATCC	1 cut(s)	1356
BsuRI	GGCC	3 cut(s)	238, 439, 634
BtsCI	GGATG	4 cut(s)	69, 129, 547, 1252
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	5 cut(s)	106, 825, 986, 1157, 1320
Cac8I	GCNNGC	5 cut(s)	402, 413, 543, 617, 632
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr13I	GGNCC	3 cut(s)	209, 236, 237
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	4 cut(s)	12, 623, 675, 841
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	6 cut(s)	46, 158, 184, 233, 393, 769
CviQI	GTAC	4 cut(s)	12, 623, 675, 841
DdeI	CTNAG	3 cut(s)	178, 263, 268
DpnI	GATC	4 cut(s)	38, 835, 1056, 1341
DpnII	GATC	4 cut(s)	36, 833, 1054, 1339
DraIII	CACNNNGTG	1 cut(s)	578
Ecl136II	GAGCTC	1 cut(s)	1016
Eco105I	TACGTA	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	3 cut(s)	240, 928, 1018
Eco31I	GGTCTC	1 cut(s)	946
Eco47I	GGWCC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	1016
Eco57I	CTGAAG	2 cut(s)	117, 1281
EcoICRI	GAGCTC	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	586
EcoRII	CCWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	299
EcoT38I	GRGCYC	3 cut(s)	240, 928, 1018
FaeI	CATG	6 cut(s)	49, 161, 187, 236, 396, 772
FalI	AAGNNNNNCTT	4 cut(s)	1157, 1189, 1285, 1317
FaqI	GGGAC	1 cut(s)	244
FatI	CATG	6 cut(s)	45, 157, 183, 232, 392, 768
FauI	CCCGC	1 cut(s)	995
FblI	GTMKAC	1 cut(s)	1271
Fnu4HI	GCNGC	2 cut(s)	816, 1353
FokI	GGATG	4 cut(s)	56, 116, 534, 1259
FriOI	GRGCYC	3 cut(s)	240, 928, 1018
Fsp4HI	GCNGC	2 cut(s)	816, 1353
FspBI	CTAG	6 cut(s)	75, 542, 752, 1029, 1218, 1305
GluI	GCNGC	2 cut(s)	816, 1353
GsuI	CTGGAG	1 cut(s)	849
HaeIII	GGCC	3 cut(s)	238, 439, 634
HapII	CCGG	1 cut(s)	1349
HgaI	GACGC	1 cut(s)	296
Hin1II	CATG	6 cut(s)	49, 161, 187, 236, 396, 772
HincII	GTYRAC	1 cut(s)	1272
HindII	GTYRAC	1 cut(s)	1272
HinfI	GANTC	5 cut(s)	87, 326, 458, 1214, 1265
HpaII	CCGG	1 cut(s)	1349
HphI	GGTGA	3 cut(s)	467, 1217, 1326
Hpy166II	GTNNAC	6 cut(s)	14, 212, 675, 703, 906, 1272
Hpy8I	GTNNAC	6 cut(s)	14, 212, 675, 703, 906, 1272
Hpy99I	CGWCG	1 cut(s)	1273
HpyAV	CCTTC	2 cut(s)	749, 1385
HpyCH4III	ACNGT	3 cut(s)	1024, 1315, 1370
HpyCH4IV	ACGT	2 cut(s)	140, 510
HpyCH4V	TGCA	7 cut(s)	4, 125, 297, 392, 404, 720, 1381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 815
HpyF3I	CTNAG	3 cut(s)	178, 263, 268
HpySE526I	ACGT	2 cut(s)	140, 510
Hsp92II	CATG	6 cut(s)	49, 161, 187, 236, 396, 772
Kzo9I	GATC	4 cut(s)	36, 833, 1054, 1339
LmnI	GCTCC	4 cut(s)	154, 351, 532, 1013
Lsp1109I	GCAGC	2 cut(s)	827, 1364
LweI	GCATC	3 cut(s)	306, 925, 1288
MaeI	CTAG	6 cut(s)	75, 542, 752, 1029, 1218, 1305
MaeII	ACGT	2 cut(s)	140, 510
MaeIII	GTNAC	4 cut(s)	88, 506, 511, 1317
MalI	GATC	4 cut(s)	38, 835, 1056, 1341
MboI	GATC	4 cut(s)	36, 833, 1054, 1339
MboII	GAAGA	7 cut(s)	182, 296, 784, 811, 814, 1064, 1274
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	3 cut(s)	36, 1054, 1339
MhlI	GDGCHC	4 cut(s)	240, 527, 928, 1018
MlyI	GAGTC	2 cut(s)	96, 1208
MmeI	TCCRAC	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	299
MseI	TTAA	3 cut(s)	714, 741, 864
MslI	CAYNNNNRTG	3 cut(s)	359, 773, 933
MspI	CCGG	1 cut(s)	1349
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	1279
MvaI	CCWGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	229, 815
NdeII	GATC	4 cut(s)	36, 833, 1054, 1339
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	6 cut(s)	49, 161, 187, 236, 396, 772
NlaIV	GGNNCC	4 cut(s)	38, 238, 524, 876
NmuCI	GTSAC	1 cut(s)	88
NsiI	ATGCAT	1 cut(s)	299
PceI	AGGCCT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	1279
PfeI	GAWTC	3 cut(s)	326, 458, 1265
PflMI	CCANNNNNTGG	1 cut(s)	557
PkrI	GCNGC	2 cut(s)	817, 1354
PleI	GAGTC	2 cut(s)	95, 1208
PpsI	GAGTC	2 cut(s)	95, 1208
Ppu21I	YACGTR	1 cut(s)	511
Psp124BI	GAGCTC	1 cut(s)	1018
Psp6I	CCWGG	1 cut(s)	40
PspGI	CCWGG	1 cut(s)	40
PspN4I	GGNNCC	4 cut(s)	38, 238, 524, 876
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	3 cut(s)	209, 236, 237
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	3 cut(s)	36, 1054, 1339
RsaI	GTAC	4 cut(s)	13, 624, 676, 842
RsaNI	GTAC	4 cut(s)	12, 623, 675, 841
RseI	CAYNNNNRTG	3 cut(s)	359, 773, 933
SacI	GAGCTC	1 cut(s)	1018
SalI	GTCGAC	1 cut(s)	1270
SaqAI	TTAA	3 cut(s)	714, 741, 864
SatI	GCNGC	2 cut(s)	816, 1353
Sau3AI	GATC	4 cut(s)	36, 833, 1054, 1339
Sau96I	GGNCC	3 cut(s)	209, 236, 237
SchI	GAGTC	2 cut(s)	96, 1208
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	4 cut(s)	240, 527, 928, 1018
SfaNI	GCATC	3 cut(s)	306, 925, 1288
SinI	GGWCC	1 cut(s)	209
SmiMI	CAYNNNNRTG	3 cut(s)	359, 773, 933
SmlI	CTYRAG	2 cut(s)	62, 1184
SmoI	CTYRAG	2 cut(s)	62, 1184
SnaBI	TACGTA	1 cut(s)	511
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	1 cut(s)	1002
SspMI	CTAG	6 cut(s)	75, 542, 752, 1029, 1218, 1305
SstI	GAGCTC	1 cut(s)	1018
StuI	AGGCCT	1 cut(s)	439
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	3 cut(s)	1024, 1315, 1370
TaiI	ACGT	2 cut(s)	143, 513
TaqI	TCGA	4 cut(s)	18, 300, 1050, 1271
TaqII	GACCGA	1 cut(s)	970
TatI	WGTACW	2 cut(s)	622, 674
TfiI	GAWTC	3 cut(s)	326, 458, 1265
Tru1I	TTAA	3 cut(s)	714, 741, 864
Tru9I	TTAA	3 cut(s)	714, 741, 864
TscAI	CASTG	5 cut(s)	113, 832, 993, 1164, 1320
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	2 cut(s)	815, 1352
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	2 cut(s)	174, 785
TspGWI	ACGGA	1 cut(s)	629
TspRI	CASTG	5 cut(s)	113, 832, 993, 1164, 1320
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	209
XapI	RAATTY	4 cut(s)	386, 479, 586, 1142
XmiI	GTMKAC	1 cut(s)	1271
XspI	CTAG	6 cut(s)	75, 542, 752, 1029, 1218, 1305
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.