Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Forward (+)

24607294 .. 24623273

Gene Structure 15980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1929 bp

ATGGGTTCAATAGATGTAGCAGGATCCAACAAACTGCATGCAGTTTGTGTCCCTTACCCAGCACAAGGCCATGTCAAACCCATGATGGAATTAGCCAAGCTTCTGCACTCGAGGGGATTCCACATTACCTTTGTCAACACCGAGTTCAATCACAGGCGCTTAGTTCGGTCCAAAGGTTCCGACTTATTCGTTGAGGGCCTAGTGGATTTCCAGTTTGAGACCATACCGGATGGGCTGCCACCTTCGGATAAAGACGCGACACAAGATGTCCCGACTTTATGTGACTCCACCAGGAAAACTTGTCTAGGTCCTTTTAAGGAGCTGGTGATGAAGATCAATTCATCACGTGAAGTGCCAAAAGTTAGTTGTGTAATCACAGATGGTGTGATGGGATTTGGGAGGGAAGCTGCTAAGGAATTAGGGATTCCTGAGGTTCAATTTTGGACCGCCTCTGCTTGTGGCTTCATGGCTTACCTGCACTATAGTGAACTAGCCAAACGAGGAATTGTTCCTTTTCAAGATGAAGAATACATGCATGGCGGTACACTGAATACACAAATTAACTGGATCCCAGGCATGAAAAATGTCAGGCTCAAGGACATTCCTAGTTTCATCAGAGTTACTAATGTCAATGATATAATGTTAGATTTCATGGGATCCGAAGCACAAAACTGTTTGACATCTTCAGCAATCATCTTCAACACATTCGATGAATTGGAACACGAAGTGTTAGAATCAATATCAGCCAAGTTTCCCAACTTTTACACGATTGGTCCACTCACTTTGCTTGGAAAGCAAGTTCCTGATGAGAGCAATTTGATCAAGTCACTTAGCTCAAGCTTATGGAAAGAAGACGCAAAATGTCTTGAGTGGCTTGATGAACAGAAACCCAACTCAGTTGTTTATGTGAATTATGGGAGCATAACATCAATGACAGACCAACATTTGAGAGAATTTGCTTGGGGGCTGGCAAATAGCAAGCACCCTTTTTTGTGGATACTGAGGCATGATGTGGTAAAGGGTGATTCGATCAAGGATAGGGGTTGCATTGCAAATTGGTGTCCCCAGGACCAAGTGCTAGCACATCCATCAGTTGGGGTTTTTCTAACACATTGTGGTTGGAATTCTACTATTGAAAGTATAGCTGAAGGTGTGCCTGTAATTTGTTGGCCTTTCTTTGCCGAACAGCAAACAAATTGCCCTTTCGCGTGTACTGATTGGGAAATTGGAATGGAGGTGAACAATGATGTTAAGCACGACGAGAGTGAAGAGCTTGTTGAGGAAATGCTGGAAGGGAAGGCAGTGATTGTTGATGATACACCTCCGGCAAGGGAGGACGTGAGAGAAGGACCTTCTTTTGTGCTCAAGTCGCCATCTCCGCCTCAAGTTACTTCCCCTAAAAGGAGTGAAGATGAGTTTAGAGAGGCAAAAGAGTTAGTTATTGAGAGGAATAGTGATGGGATTAGTGATGCACAGGTTGGTGATGGAATTATTCTTGCACACGTGGTTGATGGTGCTACTGGGGGAGTGAATGAGATTGAAAAGAATGATGTTTTTAATGCAAATGGTATGCATGTGGGTGAGACTTTGGGAGATAATTCTTTTAAGCAACGTGTTGCAGGTGAGCAATCCTACGACAACCTCACACCCAAATCAATCGACCTCTTCTCCGCCTCTTACCTCTCAATCCACTCACAGACCAAAGACCTCCTCACCTTCCTTGAGTCCACTCTCGAACCTGACTCCATCTTCGCCATCGAAATCGCCAGCGACCACAAGAACTGGAAATCCCGCGACTTCGGCCGCATCCAGTTCACCACCCTAGCCCACAAAGCTAGAGCTCAGTCTCTCTCCTCCTCCACCGATCTTGGGGCAAGAAGTCTACACCCTCTTCCAATTTCAACCAACCAGAGATCCAGATGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

643

Amino Acids

71.49

Weight (kDa)

5.13

Isoelectric Point (pI)

46.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 141	9.2e-08	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	68 - 410	1.1e-27	UDP-glucoronosyl and UDP-glucosyl transferase
RRM_RdRP1_2	PF26250	568 - 623	3.2e-16	RdRP1/2, RRM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1610
Acc36I	ACCTGC	2 cut(s)	483, 1610
AccB7I	CCANNNNNTGG	1 cut(s)	1094
AccI	GTMKAC	1 cut(s)	1882
AccII	CGCG	3 cut(s)	257, 1208, 1794
AciI	CCGC	6 cut(s)	447, 540, 1379, 1671, 1792, 1804
AclWI	GGATC	7 cut(s)	18, 31, 562, 575, 651, 664, 1908
AcoI	YGGCCR	1 cut(s)	1801
AcsI	RAATTY	2 cut(s)	953, 1123
AcuI	CTGAAG	2 cut(s)	669, 1167
AcvI	CACGTG	2 cut(s)	347, 1504
AdeI	CACNNNGTG	2 cut(s)	727, 1115
AfaI	GTAC	2 cut(s)	544, 1213
AfiI	CCNNNNNNNGG	4 cut(s)	65, 1094, 1401, 1869
AflIII	ACRYGT	2 cut(s)	1501, 1612
AgsI	TTSAA	8 cut(s)	9, 148, 437, 518, 700, 1136, 1541, 1902
AjiI	CACGTC	1 cut(s)	1339
AjnI	CCWGG	3 cut(s)	290, 571, 1065
AleI	CACNNNNGTG	1 cut(s)	483
AloI	GAACNNNNNNTCC	4 cut(s)	783, 815, 1772, 1804
AluBI	AGCT	9 cut(s)	100, 322, 407, 834, 840, 1145, 1273, 1835, 1841
AluI	AGCT	9 cut(s)	100, 322, 407, 834, 840, 1145, 1273, 1835, 1841
Alw21I	GWGCWC	2 cut(s)	1365, 1843
Alw26I	GTCTC	3 cut(s)	212, 1577, 1851
AlwI	GGATC	7 cut(s)	18, 31, 562, 575, 651, 664, 1908
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	4 cut(s)	67, 196, 1169, 1801
ApeKI	GCWGC	2 cut(s)	235, 407
ApoI	RAATTY	2 cut(s)	953, 1123
ArsI	GACNNNNNNTTYG	2 cut(s)	1733, 1765
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	7 cut(s)	168, 196, 308, 444, 773, 1069, 1349
AsuHPI	GGTGA	8 cut(s)	337, 1034, 1249, 1493, 1592, 1634, 1705, 1807
AsuNHI	GCTAGC	1 cut(s)	1078
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	6 cut(s)	168, 308, 444, 773, 1069, 1349
AxyI	CCTNAGG	1 cut(s)	429
BamHI	GGATCC	3 cut(s)	23, 567, 656
BanII	GRGCYC	1 cut(s)	1843
BbrPI	CACGTG	2 cut(s)	347, 1504
BbsI	GAAGAC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	1365, 1843
BbvI	GCAGC	2 cut(s)	222, 394
BciT130I	CCWGG	3 cut(s)	292, 573, 1067
BciVI	GTATCC	1 cut(s)	990
BclI	TGATCA	1 cut(s)	819
BcoDI	GTCTC	3 cut(s)	212, 1577, 1851
BfaI	CTAG	7 cut(s)	200, 305, 491, 606, 1079, 1823, 1836
BfmI	CTRYAG	1 cut(s)	481
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	2 cut(s)	483, 1610
BfuI	GTATCC	1 cut(s)	990
BisI	GCNGC	3 cut(s)	236, 408, 1804
BlsI	GCNGC	3 cut(s)	237, 409, 1805
Bme1390I	CCNGG	3 cut(s)	292, 573, 1067
Bme18I	GGWCC	6 cut(s)	168, 308, 444, 773, 1069, 1349
BmeT110I	CYCGRG	1 cut(s)	109
BmgBI	CACGTC	1 cut(s)	1339
BmgT120I	GGNCC	7 cut(s)	168, 196, 308, 444, 773, 1069, 1349
BmiI	GGNNCC	4 cut(s)	25, 178, 569, 658
BmrFI	CCNGG	3 cut(s)	292, 573, 1067
BmrI	ACTGGG	1 cut(s)	1530
BmsI	GCATC	2 cut(s)	1459, 1815
BmtI	GCTAGC	1 cut(s)	1082
BmuI	ACTGGG	1 cut(s)	1530
BpiI	GAAGAC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	411
BpuEI	CTTGAG	6 cut(s)	578, 820, 887, 1349, 1368, 1742
BsaAI	YACGTR	2 cut(s)	347, 1504
BsaBI	GATNNNNATC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	2 cut(s)	571, 1065
BsaWI	WCCGGW	1 cut(s)	226
BsaXI	ACNNNNNCTCC	2 cut(s)	1652, 1682
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 1094, 1401, 1869
Bse1I	ACTGG	5 cut(s)	211, 569, 1525, 1787, 1810
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	1047
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	3 cut(s)	292, 573, 1067
BseDI	CCNNGG	2 cut(s)	571, 1065
BseGI	GGATG	3 cut(s)	235, 1084, 1806
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	4 cut(s)	65, 1094, 1401, 1869
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	4 cut(s)	420, 909, 992, 1856
BseNI	ACTGG	5 cut(s)	211, 569, 1525, 1787, 1810
BseRI	GAGGAG	3 cut(s)	1700, 1843, 1846
BseX3I	CGGCCG	1 cut(s)	1801
BseXI	GCAGC	2 cut(s)	222, 394
BseYI	CCCAGC	1 cut(s)	58
BsgI	GTGCAG	2 cut(s)	89, 461
Bsh1236I	CGCG	3 cut(s)	257, 1208, 1794
Bsh1285I	CGRYCG	1 cut(s)	1804
BshFI	GGCC	4 cut(s)	69, 198, 1171, 1803
BsiEI	CGRYCG	1 cut(s)	1804
BsiHKAI	GWGCWC	2 cut(s)	1365, 1843
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	2 cut(s)	227, 1325
BslFI	GGGAC	3 cut(s)	35, 254, 1047
BslI	CCNNNNNNNGG	4 cut(s)	65, 1094, 1401, 1869
BsmAI	GTCTC	3 cut(s)	212, 1577, 1851
BsmFI	GGGAC	3 cut(s)	35, 254, 1047
BsnI	GGCC	4 cut(s)	69, 198, 1171, 1803
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	1 cut(s)	109
Bsp1286I	GDGCHC	2 cut(s)	1365, 1843
Bsp143I	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
BspACI	CCGC	6 cut(s)	447, 540, 1379, 1671, 1792, 1804
BspANI	GGCC	4 cut(s)	69, 198, 1171, 1803
BspCNI	CTCAG	4 cut(s)	421, 908, 993, 1855
BspFNI	CGCG	3 cut(s)	257, 1208, 1794
BspLI	GGNNCC	4 cut(s)	25, 178, 569, 658
BspMI	ACCTGC	2 cut(s)	483, 1610
BspOI	GCTAGC	1 cut(s)	1082
BspPI	GGATC	7 cut(s)	18, 31, 562, 575, 651, 664, 1908
BspQI	GCTCTTC	1 cut(s)	1263
BspTNI	GGTCTC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	1047
BsrI	ACTGG	5 cut(s)	211, 569, 1525, 1787, 1810
BssECI	CCNNGG	2 cut(s)	571, 1065
BssMI	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
Bst2UI	CCWGG	3 cut(s)	292, 573, 1067
Bst4CI	ACNGT	1 cut(s)	674
Bst6I	CTCTTC	3 cut(s)	1263, 1670, 1896
BstBAI	YACGTR	2 cut(s)	347, 1504
BstC8I	GCNNGC	5 cut(s)	39, 969, 980, 1080, 1768
BstDEI	CTNAG	7 cut(s)	160, 411, 429, 830, 895, 1001, 1842
BstF5I	GGATG	3 cut(s)	235, 1084, 1806
BstFNI	CGCG	3 cut(s)	257, 1208, 1794
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	8 cut(s)	26, 336, 570, 659, 822, 1032, 1867, 1916
BstMAI	GTCTC	3 cut(s)	212, 1577, 1851
BstMBI	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
BstMCI	CGRYCG	1 cut(s)	1804
BstMWI	GCNNNNNNNGC	5 cut(s)	793, 1369, 1378, 1800, 1832
BstNI	CCWGG	3 cut(s)	292, 573, 1067
BstNSI	RCATGY	3 cut(s)	41, 535, 1577
BstSCI	CCNGG	3 cut(s)	290, 571, 1065
BstSFI	CTRYAG	1 cut(s)	481
BstUI	CGCG	3 cut(s)	257, 1208, 1794
BstV1I	GCAGC	2 cut(s)	222, 394
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	4 cut(s)	23, 567, 656, 1913
BstYI	RGATCY	4 cut(s)	23, 567, 656, 1913
BstZI	CGGCCG	1 cut(s)	1801
Bsu36I	CCTNAGG	1 cut(s)	429
BsuI	GTATCC	1 cut(s)	990
BsuRI	GGCC	4 cut(s)	69, 198, 1171, 1803
BtrI	CACGTC	1 cut(s)	1339
BtsCI	GGATG	3 cut(s)	235, 1084, 1806
BtsI	GCAGTG	1 cut(s)	1308
BtsIMutI	CAGTG	2 cut(s)	545, 1308
BveI	ACCTGC	2 cut(s)	483, 1610
Cac8I	GCNNGC	5 cut(s)	39, 969, 980, 1080, 1768
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	7 cut(s)	168, 196, 308, 444, 773, 1069, 1349
CseI	GACGC	2 cut(s)	263, 863
Csp6I	GTAC	2 cut(s)	543, 1212
CspCI	CAANNNNNGTGG	4 cut(s)	765, 800, 1849, 1884
CviQI	GTAC	2 cut(s)	543, 1212
DdeI	CTNAG	7 cut(s)	160, 411, 429, 830, 895, 1001, 1842
DpnI	GATC	8 cut(s)	25, 335, 569, 658, 821, 1031, 1866, 1915
DpnII	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
DraIII	CACNNNGTG	2 cut(s)	727, 1115
EaeI	YGGCCR	1 cut(s)	1801
EagI	CGGCCG	1 cut(s)	1801
Eam1104I	CTCTTC	3 cut(s)	1263, 1670, 1896
EarI	CTCTTC	3 cut(s)	1263, 1670, 1896
EciI	GGCGGA	2 cut(s)	1368, 1660
Ecl136II	GAGCTC	1 cut(s)	1841
EclXI	CGGCCG	1 cut(s)	1801
Eco24I	GRGCYC	1 cut(s)	1843
Eco31I	GGTCTC	1 cut(s)	212
Eco47I	GGWCC	6 cut(s)	168, 308, 444, 773, 1069, 1349
Eco52I	CGGCCG	1 cut(s)	1801
Eco53kI	GAGCTC	1 cut(s)	1841
Eco57I	CTGAAG	2 cut(s)	669, 1167
Eco72I	CACGTG	2 cut(s)	347, 1504
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	1841
EcoO109I	RGGNCCY	3 cut(s)	196, 308, 1349
EcoRI	GAATTC	1 cut(s)	1123
EcoRII	CCWGG	3 cut(s)	290, 571, 1065
EcoT22I	ATGCAT	2 cut(s)	537, 1575
EcoT38I	GRGCYC	1 cut(s)	1843
FaqI	GGGAC	3 cut(s)	35, 254, 1047
FauI	CCCGC	1 cut(s)	1799
FbaI	TGATCA	1 cut(s)	819
FblI	GTMKAC	1 cut(s)	1882
Fnu4HI	GCNGC	3 cut(s)	236, 408, 1804
FokI	GGATG	3 cut(s)	242, 1071, 1793
FriOI	GRGCYC	1 cut(s)	1843
Fsp4HI	GCNGC	3 cut(s)	236, 408, 1804
FspBI	CTAG	7 cut(s)	200, 305, 491, 606, 1079, 1823, 1836
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	3 cut(s)	236, 408, 1804
GsaI	CCCAGC	1 cut(s)	62
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	4 cut(s)	69, 198, 1171, 1803
HapII	CCGG	2 cut(s)	227, 1325
HgaI	GACGC	2 cut(s)	263, 863
HhaI	GCGC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	136
HindII	GTYRAC	1 cut(s)	136
HindIII	AAGCTT	2 cut(s)	98, 838
HinfI	GANTC	7 cut(s)	117, 284, 424, 734, 1025, 1724, 1742
HpaII	CCGG	2 cut(s)	227, 1325
HphI	GGTGA	8 cut(s)	337, 1034, 1249, 1493, 1592, 1634, 1705, 1807
Hpy166II	GTNNAC	9 cut(s)	136, 488, 545, 776, 1212, 1240, 1728, 1815, 1883
Hpy188I	TCNGA	4 cut(s)	181, 247, 617, 661
Hpy188III	TCNNGA	7 cut(s)	271, 428, 518, 803, 866, 1733, 1917
Hpy8I	GTNNAC	9 cut(s)	136, 488, 545, 776, 1212, 1240, 1728, 1815, 1883
Hpy99I	CGWCG	1 cut(s)	1262
HpyAV	CCTTC	7 cut(s)	252, 1142, 1286, 1291, 1340, 1362, 1726
HpyCH4III	ACNGT	1 cut(s)	674
HpyCH4IV	ACGT	4 cut(s)	346, 1338, 1503, 1612
HpyF10VI	GCNNNNNNNGC	5 cut(s)	793, 1369, 1378, 1800, 1832
HpyF3I	CTNAG	7 cut(s)	160, 411, 429, 830, 895, 1001, 1842
HpySE526I	ACGT	4 cut(s)	346, 1338, 1503, 1612
HspAI	GCGC	1 cut(s)	157
Ksp22I	TGATCA	1 cut(s)	819
Kzo9I	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
LguI	GCTCTTC	1 cut(s)	1263
LmnI	GCTCC	2 cut(s)	319, 918
Lsp1109I	GCAGC	2 cut(s)	222, 394
LweI	GCATC	2 cut(s)	1459, 1815
MaeI	CTAG	7 cut(s)	200, 305, 491, 606, 1079, 1823, 1836
MaeII	ACGT	4 cut(s)	346, 1338, 1503, 1612
MaeIII	GTNAC	4 cut(s)	281, 619, 825, 1387
MalI	GATC	8 cut(s)	25, 335, 569, 658, 821, 1031, 1866, 1915
MboI	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
MflI	RGATCY	4 cut(s)	23, 567, 656, 1913
MhlI	GDGCHC	2 cut(s)	1365, 1843
MlyI	GAGTC	3 cut(s)	278, 1733, 1736
MmeI	TCCRAC	3 cut(s)	51, 204, 1100
Mph1103I	ATGCAT	2 cut(s)	537, 1575
MseI	TTAA	5 cut(s)	315, 561, 1251, 1557, 1605
MslI	CAYNNNNRTG	2 cut(s)	483, 1578
MspI	CCGG	2 cut(s)	227, 1325
MspR9I	CCNGG	3 cut(s)	292, 573, 1067
MvaI	CCWGG	3 cut(s)	292, 573, 1067
MvnI	CGCG	3 cut(s)	257, 1208, 1794
MwoI	GCNNNNNNNGC	5 cut(s)	793, 1369, 1378, 1800, 1832
NdeII	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
NheI	GCTAGC	1 cut(s)	1078
NlaIV	GGNNCC	4 cut(s)	25, 178, 569, 658
NmuCI	GTSAC	2 cut(s)	281, 825
NsiI	ATGCAT	2 cut(s)	537, 1575
NspI	RCATGY	3 cut(s)	41, 535, 1577
OliI	CACNNNNGTG	1 cut(s)	483
PaeI	GCATGC	1 cut(s)	41
PaeR7I	CTCGAG	1 cut(s)	109
PaqCI	CACCTGC	1 cut(s)	1610
PciSI	GCTCTTC	1 cut(s)	1263
PfeI	GAWTC	4 cut(s)	117, 424, 734, 1025
PflMI	CCANNNNNTGG	1 cut(s)	1094
PkrI	GCNGC	3 cut(s)	237, 409, 1805
PleI	GAGTC	3 cut(s)	278, 1732, 1736
PmaCI	CACGTG	2 cut(s)	347, 1504
PmlI	CACGTG	2 cut(s)	347, 1504
PpsI	GAGTC	3 cut(s)	278, 1732, 1736
Ppu21I	YACGTR	2 cut(s)	347, 1504
PpuMI	RGGWCCY	2 cut(s)	308, 1349
Psp124BI	GAGCTC	1 cut(s)	1843
Psp5II	RGGWCCY	2 cut(s)	308, 1349
Psp6I	CCWGG	3 cut(s)	290, 571, 1065
PspCI	CACGTG	2 cut(s)	347, 1504
PspFI	CCCAGC	1 cut(s)	58
PspGI	CCWGG	3 cut(s)	290, 571, 1065
PspN4I	GGNNCC	4 cut(s)	25, 178, 569, 658
PspPI	GGNCC	7 cut(s)	168, 196, 308, 444, 773, 1069, 1349
PspPPI	RGGWCCY	2 cut(s)	308, 1349
PspXI	VCTCGAGB	1 cut(s)	109
PsuI	RGATCY	4 cut(s)	23, 567, 656, 1913
RsaI	GTAC	2 cut(s)	544, 1213
RsaNI	GTAC	2 cut(s)	543, 1212
RseI	CAYNNNNRTG	2 cut(s)	483, 1578
SacI	GAGCTC	1 cut(s)	1843
SapI	GCTCTTC	1 cut(s)	1263
SaqAI	TTAA	5 cut(s)	315, 561, 1251, 1557, 1605
SatI	GCNGC	3 cut(s)	236, 408, 1804
Sau3AI	GATC	8 cut(s)	23, 333, 567, 656, 819, 1029, 1864, 1913
Sau96I	GGNCC	7 cut(s)	168, 196, 308, 444, 773, 1069, 1349
SchI	GAGTC	3 cut(s)	278, 1733, 1736
ScrFI	CCNGG	3 cut(s)	292, 573, 1067
SduI	GDGCHC	2 cut(s)	1365, 1843
SfaNI	GCATC	2 cut(s)	1459, 1815
SfcI	CTRYAG	1 cut(s)	481
Sfr274I	CTCGAG	1 cut(s)	109
SinI	GGWCC	6 cut(s)	168, 308, 444, 773, 1069, 1349
SlaI	CTCGAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	2 cut(s)	483, 1578
SmlI	CTYRAG	7 cut(s)	109, 593, 835, 866, 1364, 1383, 1721
SmoI	CTYRAG	7 cut(s)	109, 593, 835, 866, 1364, 1383, 1721
SphI	GCATGC	1 cut(s)	41
SsiI	CCGC	6 cut(s)	447, 540, 1379, 1671, 1792, 1804
SspMI	CTAG	7 cut(s)	200, 305, 491, 606, 1079, 1823, 1836
SstI	GAGCTC	1 cut(s)	1843
StyD4I	CCNGG	3 cut(s)	290, 571, 1065
TaaI	ACNGT	1 cut(s)	674
TaiI	ACGT	4 cut(s)	349, 1341, 1506, 1615
TaqI	TCGA	6 cut(s)	110, 708, 1028, 1659, 1734, 1758
TaqII	GACCGA	1 cut(s)	156
TatI	WGTACW	1 cut(s)	1211
TauI	GCSGC	1 cut(s)	1806
TfiI	GAWTC	4 cut(s)	117, 424, 734, 1025
Tru1I	TTAA	5 cut(s)	315, 561, 1251, 1557, 1605
Tru9I	TTAA	5 cut(s)	315, 561, 1251, 1557, 1605
TscAI	CASTG	2 cut(s)	552, 1308
TseFI	GTSAC	2 cut(s)	281, 825
TseI	GCWGC	2 cut(s)	235, 407
Tsp45I	GTSAC	2 cut(s)	281, 825
TspDTI	ATGAA	9 cut(s)	330, 344, 454, 537, 593, 601, 640, 726, 894
TspRI	CASTG	2 cut(s)	552, 1308
Van91I	CCANNNNNTGG	1 cut(s)	1094
VpaK11BI	GGWCC	6 cut(s)	168, 308, 444, 773, 1069, 1349
XapI	RAATTY	2 cut(s)	953, 1123
XceI	RCATGY	3 cut(s)	41, 535, 1577
XhoI	CTCGAG	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	1882
XspI	CTAG	7 cut(s)	200, 305, 491, 606, 1079, 1823, 1836
Zsp2I	ATGCAT	2 cut(s)	537, 1575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.