Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

38664276 .. 38666266

Gene Structure 1991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52580.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGGTTCACCACAATTAGGAGCCAAAAAACTTCATGCAGTCTGTGTCCCTTTCCCATCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGTACTCCAGGGGATTCCACATAACCATTGTCAACACCGAGTTCAACCACCGGCGTTTGATCCGATCCAGAGGTTCCGACTCCGTCAAGGGACTACCGGACTTCCAGTTCGCAACCATACCGGACGGGCTGCCACCTTCAGATAAAGATGCAACCCAAGATGTTCCACCTCTCTGTGACTCCATTAGGAAAACATGTCGAGGCCCTTTTAAGGAGCTGGTGACTAAGCTCAATTCCTCGTCTGAAGTGCCACAGATTACTTGTATAGTTTCTGATGGTGTTACGGGATTTGGGAGGGAAGTTGCTAAGGAGCTAGGGATTCCGGAGGTTCAGTTTTGGACTGCTTCTGCTTGTGGCTTCATGGCATACTTGCAATACAGCGAACTTGTCAAACGAGGCATTGTTCCATTCAAAGATGAAAGTTTCATGGAAGATGGTACACTTGATAAGCCAGTTGATTGGATCCCAGGCATGAAGAATATGAGGCTCAAAGACATTCCTAGCTTCATCAGAGTCACTGACGTCAACGACGTAATGTTCGACTTCTTGGGATCAGAAGCACAAAACTGCTTGAAATCCTCTGCGATCATCTTCAACACGTTTGACGAATTGGAGCATGAAGTGTTGGAAGAAATCTCAGTCATGTTCCCCAACATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCATGTGCCTGAGAACAAATTGGTCAAGTCCCTCAGTTCAGGCTTATGGAAAGAAGACGTAAAATGCCTCAAATGGCTTGACAAACAGAAGCCCGATTCGGTTGTGTATGTGAACTATGGGAGCGTAACTATGATGACAGACCAACATTTGAGAGAATTTGCATGGGGGCTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTTAGGCCTGATGTGGTAAAAGGGGATTCTGTTGTCTTGCCTGAAGAATTTCTCAAGGAGATCAAGGATAGGGGTTACATAGCAAGTTGGTGTCCACAAGAGCAAGTGCTAGCACATCCATCAGTTGGGGTCTTTTTAACACACTGTGGTTGGAATTCTACTATTGAAACTATATCAGAGGGTGTGCCTGTAATCTGCTGGCCTTTCTTTTCTGAGCAGCAAACAAATTGCCGTTTCGCGTGTACTGAATGGGGAATTGGTATGGAGGTGAACAATGATGTTAAGCGCGATGAGATTGAAGAACTTGTCAAGGAAATGCTGGTGGGAGAGAAAGGCAGGAAGATGAGGCAAATGGCAAAGGAATGGAAGAAGAAAGTAATGGAAGCTGCTGATATTGGAGGATCATCATACAATAATTTTGATAGATTGATTGAGCAGTGTCTGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

480

Amino Acids

54.12

Weight (kDa)

5.76

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 137	5.1e-08	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	156 - 440	2.8e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
AccB7I	CCANNNNNTGG	1 cut(s)	1115
AccII	CGCG	2 cut(s)	1229, 1278
AccIII	TCCGGA	1 cut(s)	421
AclWI	GGATC	6 cut(s)	154, 159, 556, 569, 658, 1399
AcsI	RAATTY	3 cut(s)	944, 1037, 1144
AcuI	CTGAAG	3 cut(s)	222, 363, 1053
AcyI	GRCGYC	1 cut(s)	621
AdeI	CACNNNGTG	1 cut(s)	1136
AfaI	GTAC	3 cut(s)	104, 538, 1234
AfiI	CCNNNNNNNGG	4 cut(s)	17, 62, 310, 1115
AflIII	ACRYGT	2 cut(s)	293, 696
AgsI	TTSAA	6 cut(s)	145, 511, 673, 694, 1157, 1289
AjnI	CCWGG	2 cut(s)	107, 565
AjuI	GAANNNNNNNTTGG	2 cut(s)	1230, 1262
AloI	GAACNNNNNNTCC	2 cut(s)	191, 223
AluBI	AGCT	6 cut(s)	97, 316, 328, 412, 603, 1376
AluI	AGCT	6 cut(s)	97, 316, 328, 412, 603, 1376
AlwI	GGATC	6 cut(s)	154, 159, 556, 569, 658, 1399
AlwNI	CAGNNNCTG	1 cut(s)	1432
Aor13HI	TCCGGA	1 cut(s)	421
AoxI	GGCC	4 cut(s)	64, 301, 995, 1190
ApeKI	GCWGC	3 cut(s)	229, 1207, 1376
ApoI	RAATTY	3 cut(s)	944, 1037, 1144
ArsI	GACNNNNNNTTYG	4 cut(s)	191, 223, 620, 652
Asp700I	GAANNNNTTC	1 cut(s)	1038
AspLEI	GCGC	1 cut(s)	1278
AspS9I	GGNCC	2 cut(s)	302, 767
AsuHPI	GGTGA	2 cut(s)	331, 1270
AsuNHI	GCTAGC	1 cut(s)	1099
AvaII	GGWCC	1 cut(s)	767
BamHI	GGATCC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	849
BbvI	GCAGC	3 cut(s)	216, 1219, 1363
BccI	CCATC	4 cut(s)	64, 368, 527, 1117
BceAI	ACGGC	1 cut(s)	1206
BciT130I	CCWGG	2 cut(s)	109, 567
BfaI	CTAG	3 cut(s)	413, 600, 1100
BisI	GCNGC	3 cut(s)	230, 1208, 1377
BlsI	GCNGC	3 cut(s)	231, 1209, 1378
Bme1390I	CCNGG	2 cut(s)	109, 567
Bme18I	GGWCC	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	302, 767
BmiI	GGNNCC	3 cut(s)	22, 175, 563
BmrFI	CCNGG	2 cut(s)	109, 567
BmsI	GCATC	2 cut(s)	72, 238
BmtI	GCTAGC	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	849
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	1028
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	2 cut(s)	108, 565
BsaWI	WCCGGW	3 cut(s)	196, 220, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	416, 446
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 62, 310, 1115
Bse118I	RCCGGY	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	205, 551
BseAI	TCCGGA	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	109, 567
BseDI	CCNNGG	2 cut(s)	108, 565
BseGI	GGATG	1 cut(s)	1105
BseLI	CCNNNNNNNGG	4 cut(s)	17, 62, 310, 1115
BseMII	CTCAG	4 cut(s)	750, 789, 835, 1194
BseNI	ACTGG	2 cut(s)	205, 551
BseXI	GCAGC	3 cut(s)	216, 1219, 1363
Bsh1236I	CGCG	2 cut(s)	1229, 1278
BshFI	GGCC	4 cut(s)	66, 303, 997, 1192
BsiSI	CCGG	4 cut(s)	151, 197, 221, 422
BslFI	GGGAC	3 cut(s)	32, 204, 802
BslI	CCNNNNNNNGG	4 cut(s)	17, 62, 310, 1115
BsmFI	GGGAC	3 cut(s)	32, 204, 802
BsnI	GGCC	4 cut(s)	66, 303, 997, 1192
Bsp13I	TCCGGA	1 cut(s)	421
Bsp143I	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
BspANI	GGCC	4 cut(s)	66, 303, 997, 1192
BspCNI	CTCAG	4 cut(s)	749, 790, 834, 1195
BspEI	TCCGGA	1 cut(s)	421
BspFNI	CGCG	2 cut(s)	1229, 1278
BspLI	GGNNCC	3 cut(s)	22, 175, 563
BspOI	GCTAGC	1 cut(s)	1103
BspPI	GGATC	6 cut(s)	154, 159, 556, 569, 658, 1399
BsrFI	RCCGGY	1 cut(s)	150
BsrI	ACTGG	2 cut(s)	205, 551
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	2 cut(s)	108, 565
BssMI	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
BssNI	GRCGYC	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	109, 567
Bst4CI	ACNGT	1 cut(s)	1136
BstACI	GRCGYC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	1432
BstC8I	GCNNGC	4 cut(s)	960, 971, 1101, 1190
BstDEI	CTNAG	6 cut(s)	324, 405, 736, 798, 821, 1203
BstF5I	GGATG	1 cut(s)	1105
BstFNI	CGCG	2 cut(s)	1229, 1278
BstHHI	GCGC	1 cut(s)	1278
BstKTI	GATC	7 cut(s)	162, 167, 564, 653, 687, 1053, 1394
BstMBI	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
BstMWI	GCNNNNNNNGC	2 cut(s)	787, 1432
BstNI	CCWGG	2 cut(s)	109, 567
BstNSI	RCATGY	2 cut(s)	297, 794
BstSCI	CCNGG	2 cut(s)	107, 565
BstUI	CGCG	2 cut(s)	1229, 1278
BstV1I	GCAGC	3 cut(s)	216, 1219, 1363
BstV2I	GAAGAC	1 cut(s)	849
BstX2I	RGATCY	1 cut(s)	561
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	4 cut(s)	66, 303, 997, 1192
BtgZI	GCGATG	1 cut(s)	1293
BtsCI	GGATG	1 cut(s)	1105
BtsI	GCAGTG	1 cut(s)	1433
BtsIMutI	CAGTG	3 cut(s)	615, 1132, 1433
Cac8I	GCNNGC	4 cut(s)	960, 971, 1101, 1190
CaiI	CAGNNNCTG	1 cut(s)	1432
CfoI	GCGC	1 cut(s)	1278
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	302, 767
Csp6I	GTAC	3 cut(s)	103, 537, 1233
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviQI	GTAC	3 cut(s)	103, 537, 1233
DdeI	CTNAG	6 cut(s)	324, 405, 736, 798, 821, 1203
DpnI	GATC	7 cut(s)	161, 166, 563, 652, 686, 1052, 1393
DpnII	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
DraIII	CACNNNGTG	1 cut(s)	1136
Eco147I	AGGCCT	1 cut(s)	997
Eco47I	GGWCC	1 cut(s)	767
Eco57I	CTGAAG	3 cut(s)	222, 363, 1053
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	2 cut(s)	107, 565
FaqI	GGGAC	3 cut(s)	32, 204, 802
Fnu4HI	GCNGC	3 cut(s)	230, 1208, 1377
FokI	GGATG	1 cut(s)	1092
Fsp4HI	GCNGC	3 cut(s)	230, 1208, 1377
FspBI	CTAG	3 cut(s)	413, 600, 1100
GlaI	GCGC	1 cut(s)	1277
GluI	GCNGC	3 cut(s)	230, 1208, 1377
GsuI	CTGGAG	1 cut(s)	91
HaeIII	GGCC	4 cut(s)	66, 303, 997, 1192
HapII	CCGG	4 cut(s)	151, 197, 221, 422
HhaI	GCGC	1 cut(s)	1278
Hin1I	GRCGYC	1 cut(s)	621
Hin6I	GCGC	1 cut(s)	1276
HinP1I	GCGC	1 cut(s)	1276
HincII	GTYRAC	3 cut(s)	73, 133, 625
HindII	GTYRAC	3 cut(s)	73, 133, 625
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	7 cut(s)	114, 179, 278, 418, 612, 884, 1016
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	4 cut(s)	151, 197, 221, 422
HphI	GGTGA	2 cut(s)	331, 1270
Hpy188I	TCNGA	9 cut(s)	164, 178, 241, 343, 373, 611, 655, 1168, 1204
Hpy188III	TCNNGA	2 cut(s)	168, 422
Hpy99I	CGWCG	1 cut(s)	632
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	1 cut(s)	1136
HpyCH4IV	ACGT	4 cut(s)	621, 630, 698, 846
HpyCH4V	TGCA	7 cut(s)	38, 85, 251, 472, 950, 962, 1435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	787, 1432
HpyF3I	CTNAG	6 cut(s)	324, 405, 736, 798, 821, 1203
HpySE526I	ACGT	4 cut(s)	621, 630, 698, 846
Hsp92I	GRCGYC	1 cut(s)	621
HspAI	GCGC	1 cut(s)	1276
Kpn2I	TCCGGA	1 cut(s)	421
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
LmnI	GCTCC	5 cut(s)	20, 313, 409, 712, 909
Lsp1109I	GCAGC	3 cut(s)	216, 1219, 1363
LweI	GCATC	2 cut(s)	72, 238
MaeI	CTAG	3 cut(s)	413, 600, 1100
MaeII	ACGT	4 cut(s)	621, 630, 698, 846
MaeIII	GTNAC	6 cut(s)	275, 319, 379, 613, 913, 1064
MalI	GATC	7 cut(s)	161, 166, 563, 652, 686, 1052, 1393
MboI	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
MflI	RGATCY	1 cut(s)	561
MlyI	GAGTC	3 cut(s)	173, 272, 621
MmeI	TCCRAC	3 cut(s)	201, 705, 1121
MroI	TCCGGA	1 cut(s)	421
MroXI	GAANNNNTTC	1 cut(s)	1038
MseI	TTAA	4 cut(s)	72, 309, 1127, 1272
MspI	CCGG	4 cut(s)	151, 197, 221, 422
MspR9I	CCNGG	2 cut(s)	109, 567
MvaI	CCWGG	2 cut(s)	109, 567
MvnI	CGCG	2 cut(s)	1229, 1278
MwoI	GCNNNNNNNGC	2 cut(s)	787, 1432
NdeII	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
NheI	GCTAGC	1 cut(s)	1099
NlaIV	GGNNCC	3 cut(s)	22, 175, 563
NmuCI	GTSAC	3 cut(s)	275, 319, 613
NspI	RCATGY	2 cut(s)	297, 794
PceI	AGGCCT	1 cut(s)	997
PciI	ACATGT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	2 cut(s)	627, 636
PdmI	GAANNNNTTC	1 cut(s)	1038
PfeI	GAWTC	4 cut(s)	114, 418, 884, 1016
PflFI	GACNNNGTC	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	1115
PkrI	GCNGC	3 cut(s)	231, 1209, 1378
PleI	GAGTC	3 cut(s)	173, 272, 620
PpsI	GAGTC	3 cut(s)	173, 272, 620
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	2 cut(s)	107, 565
PspGI	CCWGG	2 cut(s)	107, 565
PspN4I	GGNNCC	3 cut(s)	22, 175, 563
PspPI	GGNCC	2 cut(s)	302, 767
PstNI	CAGNNNCTG	1 cut(s)	1432
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	3 cut(s)	104, 538, 1234
RsaNI	GTAC	3 cut(s)	103, 537, 1233
SaqAI	TTAA	4 cut(s)	72, 309, 1127, 1272
SatI	GCNGC	3 cut(s)	230, 1208, 1377
Sau3AI	GATC	7 cut(s)	159, 164, 561, 650, 684, 1050, 1391
Sau96I	GGNCC	2 cut(s)	302, 767
SchI	GAGTC	3 cut(s)	173, 272, 621
ScrFI	CCNGG	2 cut(s)	109, 567
SfaNI	GCATC	2 cut(s)	72, 238
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	1043
SmoI	CTYRAG	1 cut(s)	1043
SseBI	AGGCCT	1 cut(s)	997
SspMI	CTAG	3 cut(s)	413, 600, 1100
StuI	AGGCCT	1 cut(s)	997
StyD4I	CCNGG	2 cut(s)	107, 565
TaaI	ACNGT	1 cut(s)	1136
TaiI	ACGT	4 cut(s)	624, 633, 701, 849
TaqI	TCGA	2 cut(s)	298, 639
TatI	WGTACW	2 cut(s)	102, 1232
TfiI	GAWTC	4 cut(s)	114, 418, 884, 1016
Tru1I	TTAA	4 cut(s)	72, 309, 1127, 1272
Tru9I	TTAA	4 cut(s)	72, 309, 1127, 1272
TscAI	CASTG	3 cut(s)	622, 1139, 1433
TseFI	GTSAC	3 cut(s)	275, 319, 613
TseI	GCWGC	3 cut(s)	229, 1207, 1376
Tsp45I	GTSAC	3 cut(s)	275, 319, 613
TspDTI	ATGAA	7 cut(s)	23, 448, 514, 531, 587, 595, 732
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	3 cut(s)	622, 1139, 1433
Tth111I	GACNNNGTC	1 cut(s)	182
Van91I	CCANNNNNTGG	1 cut(s)	1115
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	3 cut(s)	944, 1037, 1144
XceI	RCATGY	2 cut(s)	297, 794
XmnI	GAANNNNTTC	1 cut(s)	1038
XspI	CTAG	3 cut(s)	413, 600, 1100
ZraI	GACGTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.