Rw1G006460

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
13255679 .. 13271001
15323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G006460.1

Sequence Viewer

Length: 1440 bp
ATGGGTTCAACACAACCAGGAGCCAAAGAACTCCATGCAGTCTGTGTCCCTTTCCCAGCACAAGGCCATGTTAACCCTATGATGCAATTAGCCAAGCTTCTGTACTCCAGGGGATTCCACATAACCTTTGTCAACTCTGAGTTCAACCACCGGCGTTTAATCAGGTCCAAAGGGTCTGACTCCGTCAAGGGACTACCGGACTTCCAATTCGCGACCATACCAGATGGGCTGCCACCTTCAAATAAAGATGCAACCCAAGATGTTCCAACTCTATGCGACTCCATCAGGAAAACATGTCTAGGCCCTTTCAAGGAGCTGGTGACTAAACTCAATTCCTCGTCTGAAGTGCCACAGATTACTTGTATAGTTTCTGACGGGATCATGGGATTTGGGAGGGAAGTTGCTAAGGAACTGGGGATTCCTGGGGTTCAGCTTTGGACTTCTTCTGCTTGTGGCTTCATGGGGTACCTGCAATACGGCGAACTCGTCAAACGAGGCATTGTTCCATCCAAAGATGAAAGTTTCATGCAAGATGGTACACTCGATGAGCCAATTGATTGGATCCCAGGCATGAGGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTAATGTCAATGATATAATGTTCGACTACTTGAGATCTGAAGCACAACACTGCTTGAAATCCTCTGCAGTCATCTTCAACACGTTTGACGAATTGGAGCATGAAGTGTTAGAAGAAATCTCAGCCATGTTTCCCAACATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCATGGGCCCGAAAGCAAATTGGTCAAGTCCCTAAGCTCAGGCTTATGGAAAGAAGACGCAAAATGCATCGAATGGCTTGACAAACAGAAACCTGATTCGGTTGTGTATGTGAATTATGGGAGCATAGCTATGATGACAGACCAACATTTGAAAGAATTTGCATGGGGACTTGCAAATAGCCAGCACCATTTTTTGTGGATTGTCAGGCCTGATGTTGTAAAAGGTGATTCAGTAGTTTTACCCCAAGAATTTTTTGAGGAGATAAAGGATAGGGGTTACGTAACAAGTTGGTGCCCACAGGAGCAAGTGCTAGCACATCCATCAGTTGGGGTTTTTCTAACACATTGTGGTTGGAATTCTACGATTGAAACTATATCGGAGGGAGTGCCTGTACTTTGCTGGCCTTTCCATTCCGAGCAACTTACGAATTGCCGTTTCTTGTGTACTGATTGGGGAATTGGTATGGAGGTAAACAATGATTTTAAGTGCAATGAGATTGAAGCACTTGTTAAGGAAATGCTGGAAGGGGAGAAAGGCATGAAGATGAGGCGAAAGGCAGAGGAATGGAAGAAGAAAGCAATAGCAGCTATTGACACTGGAGGATCATCGTACAATAATTTTGAGAGACTGATTAAGGTGGCTCTTCAATAA

Protein Analysis

479

Amino Acids

53.81

Weight (kDa)

5.69

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 131 9.7e-09 Glycosyltransferase, N-terminal domain
UDPGT PF00201 156 - 440 5.4e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
Acc65I GGTACC 1 cut(s) 465
AccB1I GGYRCC 2 cut(s) 465, 1080
AccB7I CCANNNNNTGG 1 cut(s) 1115
AccII CGCG 1 cut(s) 212
AclWI GGATC 4 cut(s) 386, 556, 569, 1399
AcsI RAATTY 3 cut(s) 944, 1037, 1144
AcuI CTGAAG 2 cut(s) 363, 675
AdeI CACNNNGTG 1 cut(s) 1136
AfaI GTAC 6 cut(s) 104, 467, 538, 1182, 1234, 1400
AfiI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
AflIII ACRYGT 2 cut(s) 293, 696
AjnI CCWGG 4 cut(s) 16, 107, 421, 565
AluBI AGCT 7 cut(s) 97, 316, 433, 603, 825, 917, 1376
AluI AGCT 7 cut(s) 97, 316, 433, 603, 825, 917, 1376
Alw26I GTCTC 1 cut(s) 1408
AlwI GGATC 4 cut(s) 386, 556, 569, 1399
AoxI GGCC 5 cut(s) 64, 301, 794, 995, 1190
ApaI GGGCCC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 229, 1373
ApoI RAATTY 3 cut(s) 944, 1037, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
Asp718I GGTACC 1 cut(s) 465
AspS9I GGNCC 5 cut(s) 165, 302, 767, 794, 795
AsuHPI GGTGA 2 cut(s) 331, 1025
AsuNHI GCTAGC 1 cut(s) 1099
AvaII GGWCC 2 cut(s) 165, 767
BaeGI GKGCMC 2 cut(s) 798, 1085
BamHI GGATCC 1 cut(s) 561
BanI GGYRCC 2 cut(s) 465, 1080
BanII GRGCYC 1 cut(s) 798
BbsI GAAGAC 1 cut(s) 849
BbvI GCAGC 2 cut(s) 216, 1385
BccI CCATC 5 cut(s) 218, 290, 514, 527, 1117
BceAI ACGGC 2 cut(s) 493, 1206
BciT130I CCWGG 4 cut(s) 18, 109, 423, 567
BcoDI GTCTC 1 cut(s) 1408
BfaI CTAG 3 cut(s) 299, 600, 1100
BfmI CTRYAG 1 cut(s) 681
BfuAI ACCTGC 1 cut(s) 477
BglII AGATCT 1 cut(s) 650
BisI GCNGC 2 cut(s) 230, 1374
BlsI GCNGC 2 cut(s) 231, 1375
Bme1390I CCNGG 4 cut(s) 18, 109, 423, 567
Bme18I GGWCC 2 cut(s) 165, 767
BmgT120I GGNCC 5 cut(s) 165, 302, 767, 794, 795
BmiI GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
BmrFI CCNGG 4 cut(s) 18, 109, 423, 567
BmrI ACTGGG 1 cut(s) 422
BmsI GCATC 3 cut(s) 72, 238, 864
BmtI GCTAGC 1 cut(s) 1103
BmuI ACTGGG 1 cut(s) 422
BpiI GAAGAC 1 cut(s) 849
BpmI CTGGAG 2 cut(s) 91, 1407
Bpu10I CCTNAGC 3 cut(s) 405, 821, 826
BpuEI CTTGAG 2 cut(s) 572, 667
BsaAI YACGTR 1 cut(s) 1069
BsaJI CCNNGG 3 cut(s) 108, 422, 565
BsaWI WCCGGW 1 cut(s) 196
BsaXI ACNNNNNCTCC 2 cut(s) 1164, 1194
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 310, 1115
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 2 cut(s) 417, 1390
Bse3DI GCAATG 1 cut(s) 1285
BseBI CCWGG 4 cut(s) 18, 109, 423, 567
BseDI CCNNGG 3 cut(s) 108, 422, 565
BseGI GGATG 3 cut(s) 506, 594, 1105
BseLI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BseMI GCAATG 1 cut(s) 1285
BseMII CTCAG 3 cut(s) 129, 750, 840
BseNI ACTGG 2 cut(s) 417, 1390
BseRI GAGGAG 1 cut(s) 1061
BseSI GKGCMC 2 cut(s) 798, 1085
BseXI GCAGC 2 cut(s) 216, 1385
BseYI CCCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 212
BshFI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BshNI GGYRCC 2 cut(s) 465, 1080
BsiSI CCGG 2 cut(s) 151, 197
BslFI GGGAC 4 cut(s) 32, 204, 802, 969
BslI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BsmAI GTCTC 1 cut(s) 1408
BsmFI GGGAC 4 cut(s) 32, 204, 802, 969
BsnI GGCC 5 cut(s) 66, 303, 796, 997, 1192
Bsp120I GGGCCC 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 798, 1085
Bsp143I GATC 4 cut(s) 378, 561, 650, 1391
Bsp68I TCGCGA 1 cut(s) 212
BspANI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BspCNI CTCAG 3 cut(s) 130, 749, 839
BspFNI CGCG 1 cut(s) 212
BspLI GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
BspMAI CTGCAG 1 cut(s) 685
BspMI ACCTGC 1 cut(s) 477
BspOI GCTAGC 1 cut(s) 1103
BspPI GGATC 4 cut(s) 386, 556, 569, 1399
BspQI GCTCTTC 1 cut(s) 1437
BspT107I GGYRCC 2 cut(s) 465, 1080
BsrDI GCAATG 1 cut(s) 1285
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 2 cut(s) 417, 1390
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 108, 422, 565
BssMI GATC 4 cut(s) 378, 561, 650, 1391
Bst2UI CCWGG 4 cut(s) 18, 109, 423, 567
Bst6I CTCTTC 1 cut(s) 1437
BstBAI YACGTR 1 cut(s) 1069
BstC8I GCNNGC 3 cut(s) 971, 1101, 1190
BstDEI CTNAG 5 cut(s) 138, 405, 736, 821, 826
BstF5I GGATG 3 cut(s) 506, 594, 1105
BstFNI CGCG 1 cut(s) 212
BstKTI GATC 4 cut(s) 381, 564, 653, 1394
BstMAI GTCTC 1 cut(s) 1408
BstMBI GATC 4 cut(s) 378, 561, 650, 1391
BstMWI GCNNNNNNNGC 2 cut(s) 787, 1373
BstNI CCWGG 4 cut(s) 18, 109, 423, 567
BstNSI RCATGY 1 cut(s) 297
BstSCI CCNGG 4 cut(s) 16, 107, 421, 565
BstSFI CTRYAG 1 cut(s) 681
BstSLI GKGCMC 2 cut(s) 798, 1085
BstSNI TACGTA 1 cut(s) 1069
BstUI CGCG 1 cut(s) 212
BstV1I GCAGC 2 cut(s) 216, 1385
BstV2I GAAGAC 1 cut(s) 849
BstX2I RGATCY 2 cut(s) 561, 650
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 2 cut(s) 561, 650
BsuRI GGCC 5 cut(s) 66, 303, 796, 997, 1192
BtsCI GGATG 3 cut(s) 506, 594, 1105
BtsI GCAGTG 1 cut(s) 664
BtsIMutI CAGTG 2 cut(s) 664, 1383
BtuMI TCGCGA 1 cut(s) 212
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 3 cut(s) 971, 1101, 1190
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 5 cut(s) 165, 302, 767, 794, 795
CseI GACGC 1 cut(s) 854
Csp6I GTAC 6 cut(s) 103, 466, 537, 1181, 1233, 1399
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviQI GTAC 6 cut(s) 103, 466, 537, 1181, 1233, 1399
DdeI CTNAG 5 cut(s) 138, 405, 736, 821, 826
DpnI GATC 4 cut(s) 380, 563, 652, 1393
DpnII GATC 4 cut(s) 378, 561, 650, 1391
DraIII CACNNNGTG 1 cut(s) 1136
Eam1104I CTCTTC 1 cut(s) 1437
EarI CTCTTC 1 cut(s) 1437
Eco105I TACGTA 1 cut(s) 1069
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 798
Eco47I GGWCC 2 cut(s) 165, 767
Eco57I CTGAAG 2 cut(s) 363, 675
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 4 cut(s) 16, 107, 421, 565
EcoT22I ATGCAT 1 cut(s) 857
EcoT38I GRGCYC 1 cut(s) 798
FaqI GGGAC 4 cut(s) 32, 204, 802, 969
Fnu4HI GCNGC 2 cut(s) 230, 1374
FokI GGATG 3 cut(s) 493, 581, 1092
FriOI GRGCYC 1 cut(s) 798
Fsp4HI GCNGC 2 cut(s) 230, 1374
FspBI CTAG 3 cut(s) 299, 600, 1100
GluI GCNGC 2 cut(s) 230, 1374
GsaI CCCAGC 1 cut(s) 59
GsuI CTGGAG 2 cut(s) 91, 1407
HaeIII GGCC 5 cut(s) 66, 303, 796, 997, 1192
HapII CCGG 2 cut(s) 151, 197
HgaI GACGC 1 cut(s) 854
HincII GTYRAC 2 cut(s) 73, 133
HindII GTYRAC 2 cut(s) 73, 133
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 114, 179, 278, 418, 612, 884, 1016
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 151, 197
HphI GGTGA 2 cut(s) 331, 1025
Hpy166II GTNNAC 6 cut(s) 73, 133, 539, 770, 1233, 1261
Hpy188I TCNGA 8 cut(s) 139, 178, 343, 373, 611, 655, 1168, 1204
Hpy188III TCNNGA 2 cut(s) 211, 286
Hpy8I GTNNAC 6 cut(s) 73, 133, 539, 770, 1233, 1261
HpyAV CCTTC 2 cut(s) 246, 1307
HpyCH4IV ACGT 2 cut(s) 698, 1068
HpyF10VI GCNNNNNNNGC 2 cut(s) 787, 1373
HpyF3I CTNAG 5 cut(s) 138, 405, 736, 821, 826
HpySE526I ACGT 2 cut(s) 698, 1068
KpnI GGTACC 1 cut(s) 469
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 4 cut(s) 378, 561, 650, 1391
LguI GCTCTTC 1 cut(s) 1437
LmnI GCTCC 5 cut(s) 20, 313, 712, 909, 1090
Lsp1109I GCAGC 2 cut(s) 216, 1385
LweI GCATC 3 cut(s) 72, 238, 864
MaeI CTAG 3 cut(s) 299, 600, 1100
MaeII ACGT 2 cut(s) 698, 1068
MaeIII GTNAC 4 cut(s) 319, 613, 1064, 1069
MalI GATC 4 cut(s) 380, 563, 652, 1393
MboI GATC 4 cut(s) 378, 561, 650, 1391
MboII GAAGA 8 cut(s) 435, 682, 740, 854, 1342, 1369, 1372, 1424
MfeI CAATTG 1 cut(s) 552
MflI RGATCY 2 cut(s) 561, 650
MhlI GDGCHC 2 cut(s) 798, 1085
MlyI GAGTC 3 cut(s) 173, 272, 621
MmeI TCCRAC 2 cut(s) 290, 1121
Mph1103I ATGCAT 1 cut(s) 857
MseI TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
MslI CAYNNNNRTG 2 cut(s) 917, 1331
MspI CCGG 2 cut(s) 151, 197
MspR9I CCNGG 4 cut(s) 18, 109, 423, 567
MunI CAATTG 1 cut(s) 552
MvaI CCWGG 4 cut(s) 18, 109, 423, 567
MvnI CGCG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 787, 1373
NdeII GATC 4 cut(s) 378, 561, 650, 1391
NheI GCTAGC 1 cut(s) 1099
NlaIV GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
NmuCI GTSAC 2 cut(s) 319, 613
NruI TCGCGA 1 cut(s) 212
NsiI ATGCAT 1 cut(s) 857
NspI RCATGY 1 cut(s) 297
PceI AGGCCT 1 cut(s) 997
PciI ACATGT 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 1437
PcsI WCGNNNNNNNCGW 1 cut(s) 483
PfeI GAWTC 4 cut(s) 114, 418, 884, 1016
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 1115
PkrI GCNGC 2 cut(s) 231, 1375
PleI GAGTC 3 cut(s) 173, 272, 620
PpsI GAGTC 3 cut(s) 173, 272, 620
Ppu21I YACGTR 1 cut(s) 1069
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 4 cut(s) 16, 107, 421, 565
PspFI CCCAGC 1 cut(s) 55
PspGI CCWGG 4 cut(s) 16, 107, 421, 565
PspN4I GGNNCC 5 cut(s) 22, 467, 563, 796, 1082
PspOMI GGGCCC 1 cut(s) 794
PspPI GGNCC 5 cut(s) 165, 302, 767, 794, 795
PstI CTGCAG 1 cut(s) 685
PsuI RGATCY 2 cut(s) 561, 650
PsyI GACNNNGTC 1 cut(s) 182
RruI TCGCGA 1 cut(s) 212
RsaI GTAC 6 cut(s) 104, 467, 538, 1182, 1234, 1400
RsaNI GTAC 6 cut(s) 103, 466, 537, 1181, 1233, 1399
RseI CAYNNNNRTG 2 cut(s) 917, 1331
SapI GCTCTTC 1 cut(s) 1437
SaqAI TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
SatI GCNGC 2 cut(s) 230, 1374
Sau3AI GATC 4 cut(s) 378, 561, 650, 1391
Sau96I GGNCC 5 cut(s) 165, 302, 767, 794, 795
SchI GAGTC 3 cut(s) 173, 272, 621
ScrFI CCNGG 4 cut(s) 18, 109, 423, 567
SduI GDGCHC 2 cut(s) 798, 1085
SfaNI GCATC 3 cut(s) 72, 238, 864
SfcI CTRYAG 1 cut(s) 681
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 2 cut(s) 165, 767
SmiMI CAYNNNNRTG 2 cut(s) 917, 1331
SmlI CTYRAG 2 cut(s) 587, 646
SmoI CTYRAG 2 cut(s) 587, 646
SnaBI TACGTA 1 cut(s) 1069
SseBI AGGCCT 1 cut(s) 997
SspMI CTAG 3 cut(s) 299, 600, 1100
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 4 cut(s) 16, 107, 421, 565
TaiI ACGT 2 cut(s) 701, 1071
TaqI TCGA 3 cut(s) 543, 639, 858
TatI WGTACW 3 cut(s) 102, 1180, 1232
TfiI GAWTC 4 cut(s) 114, 418, 884, 1016
Tru1I TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
Tru9I TTAA 5 cut(s) 72, 158, 1272, 1299, 1422
TscAI CASTG 2 cut(s) 671, 1390
TseFI GTSAC 2 cut(s) 319, 613
TseI GCWGC 2 cut(s) 229, 1373
Tsp45I GTSAC 2 cut(s) 319, 613
TspDTI ATGAA 5 cut(s) 448, 514, 531, 732, 1343
TspGWI ACGGA 1 cut(s) 172
TspRI CASTG 2 cut(s) 671, 1390
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 1115
VpaK11BI GGWCC 2 cut(s) 165, 767
XapI RAATTY 3 cut(s) 944, 1037, 1144
XceI RCATGY 1 cut(s) 297
XspI CTAG 3 cut(s) 299, 600, 1100
Zsp2I ATGCAT 1 cut(s) 857
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.