RchiOBHm_Chr2g0112891

Belongs to the UDP-glycosyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000867
Physical Location & Seq
Reverse (-)
24987242 .. 24989893
2652 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48630

Sequence Viewer

Length: 1440 bp
ATGGGTTCGACACAGTTAGGAGCCAAAGAACTCCATGCAGTCTGTGTCCCCTTCCCAACACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGCACTCCAGGGGATTCCGCATAACTTTTGTCAACACCGAGTTCAACCACCGGCGTTTAATCCGCTCCAGAGGTTCCGACTCTGTCAAGGGACTACCGGACTTCCAATTTGAGACCATACCGGACGGGTTGCCACCTTCAGAAAAAGATGCAACACAAGATATCCCGGCTTTGTGTGACTCCACTAGGAAAACATGTCTAGGCCCTTTCAAGGAGCTGGTGACTAAGCTCAATTCCTCATCTGAAGTGCCACAGATTACTTGTATAGTTTCTGATGGTCTCACGGGATTTGGGAGGGAAGTTGCTAAGGAACTAGGGATTCCTGAGGTTCAGTTTTGGACTGCTTCTGCTTGTGGCTTCATGGCGTACCTGCAATACAGCGAACTCGTCAAACGAGGCATTGTGCCATTTAAAGATGAAAATTTCATGCAAGATGGTACACTCGACAAGCCAATTGATTGGATCCCAGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTGATGTCAATGACATAATGTTCGACTTCCAGGGAACCGAAGCACAAAACTGTTTGAAATCCTCTGCAATCATCCTTAACACGTTTGATGAATTTGAGCATGATGTGTTAGAAGAAATCTTAGCCATGTTTCCCAACATTTACACAATAGGTCCACTTTCTTTGCTTGGTAGGCACGTGCTTGAAAACAAATTGGTCAAGTCCCTCAGCTCAGGCTTATGGAAAGAGGATGCAAAATGCCTCGAATGGCTTGACAAACAGAAACCCGATTCAGTTGTATATGTGAATTATGGGAGCATAACTATGATGACAGACCAACATTTAAAAGAATTTGCATGGGGGCTTGCAAATAGCAAGCACCATTTTTTGTGGATTGTTAGGCCTGATGTGGTAAAAGGGGATTCGGTTCTCTTGTCCGAAGAATTTTTCGAGGAGATTAAGGATAGGGGTTACATAGCAAGTTGGTGTCCACAGGAGCAAGTTCTAGCACATCCATCAGTCGGGGTTTTTCTAACTCATTGTGGTTGGAATTCTACTATTGAAACTATATCAGCGGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCTGAGCAACAGACGAATTGTCGTTTCCTGTGTACCAATTGGGGAATTGGTATGGAGGTAAACAATGATGTTATACGCGATGAGATTGAAGTGCTTGTCAAGGAAATACTGGAAGGGGAAAAAGGCATGCAGATGAGGCAAAAGGCAAAGGAATGGAAGAAGAAAGCAATAGCGGCTACTGACACTGAAGGATCATCATACAATAATTTTGAGAGACTGATTAAGGAGGCTCTTCAATAA

Protein Analysis

479

Amino Acids

54.15

Weight (kDa)

5.37

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 13 - 71 3.3e-08 Glycosyltransferase, N-terminal domain
UDPGT PF00201 68 - 440 2.4e-25 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 477
AccBSI CCGCTC 1 cut(s) 165
AccII CGCG 1 cut(s) 1278
AciI CCGC 4 cut(s) 118, 163, 1169, 1373
AclWI GGATC 3 cut(s) 556, 569, 1399
AcsI RAATTY 5 cut(s) 520, 707, 944, 1037, 1144
AcuI CTGAAG 3 cut(s) 222, 363, 1407
AcvI CACGTG 1 cut(s) 793
AfaI GTAC 3 cut(s) 467, 538, 1234
AfiI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
AflIII ACRYGT 2 cut(s) 293, 696
AgsI TTSAA 7 cut(s) 145, 310, 673, 800, 1157, 1289, 1436
AhdI GACNNNNNGTC 1 cut(s) 1218
AjnI CCWGG 3 cut(s) 107, 565, 645
AluBI AGCT 5 cut(s) 97, 316, 328, 603, 825
AluI AGCT 5 cut(s) 97, 316, 328, 603, 825
Alw26I GTCTC 3 cut(s) 206, 383, 1408
AlwI GGATC 3 cut(s) 556, 569, 1399
AoxI GGCC 4 cut(s) 64, 301, 995, 1190
ApoI RAATTY 5 cut(s) 520, 707, 944, 1037, 1144
ArsI GACNNNNNNTTYG 4 cut(s) 191, 223, 620, 652
AspS9I GGNCC 2 cut(s) 302, 767
AsuC2I CCSGG 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 331
AvaII GGWCC 1 cut(s) 767
AxyI CCTNAGG 1 cut(s) 423
BamHI GGATCC 1 cut(s) 561
BbrPI CACGTG 1 cut(s) 793
BbvCI CCTCAGC 1 cut(s) 821
BccI CCATC 3 cut(s) 368, 527, 1117
BciT130I CCWGG 3 cut(s) 109, 567, 647
BcnI CCSGG 1 cut(s) 266
BcoDI GTCTC 3 cut(s) 206, 383, 1408
BfaI CTAG 5 cut(s) 285, 299, 413, 600, 1100
BfuAI ACCTGC 1 cut(s) 477
BisI GCNGC 1 cut(s) 1374
BlpI GCTNAGC 1 cut(s) 1203
BlsI GCNGC 1 cut(s) 1375
Bme1390I CCNGG 4 cut(s) 109, 266, 567, 647
Bme18I GGWCC 1 cut(s) 767
BmeRI GACNNNNNGTC 1 cut(s) 1218
BmgT120I GGNCC 2 cut(s) 302, 767
BmiI GGNNCC 4 cut(s) 22, 175, 563, 652
BmrFI CCNGG 4 cut(s) 109, 266, 567, 647
BmsI GCATC 3 cut(s) 72, 238, 835
BpmI CTGGAG 2 cut(s) 91, 151
Bpu10I CCTNAGC 3 cut(s) 405, 821, 826
Bpu1102I GCTNAGC 1 cut(s) 1203
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 1 cut(s) 266
BsaAI YACGTR 1 cut(s) 793
BsaI GGTCTC 2 cut(s) 206, 383
BsaJI CCNNGG 3 cut(s) 108, 565, 646
BsaWI WCCGGW 2 cut(s) 196, 220
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 310, 1115
Bse118I RCCGGY 1 cut(s) 150
Bse1I ACTGG 1 cut(s) 1314
Bse21I CCTNAGG 1 cut(s) 423
BseBI CCWGG 3 cut(s) 109, 567, 647
BseDI CCNNGG 3 cut(s) 108, 565, 646
BseGI GGATG 4 cut(s) 594, 687, 850, 1105
BseLI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BseMII CTCAG 4 cut(s) 414, 835, 840, 1194
BseNI ACTGG 1 cut(s) 1314
BseRI GAGGAG 1 cut(s) 1061
BsgI GTGCAG 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 1278
BshFI GGCC 4 cut(s) 66, 303, 997, 1192
BsiSI CCGG 4 cut(s) 151, 197, 221, 266
BslFI GGGAC 3 cut(s) 32, 204, 802
BslI CCNNNNNNNGG 3 cut(s) 62, 310, 1115
BsmAI GTCTC 3 cut(s) 206, 383, 1408
BsmFI GGGAC 3 cut(s) 32, 204, 802
BsnI GGCC 4 cut(s) 66, 303, 997, 1192
Bso31I GGTCTC 2 cut(s) 206, 383
Bsp143I GATC 2 cut(s) 561, 1391
Bsp1720I GCTNAGC 1 cut(s) 1203
BspACI CCGC 4 cut(s) 118, 163, 1169, 1373
BspANI GGCC 4 cut(s) 66, 303, 997, 1192
BspCNI CTCAG 4 cut(s) 415, 834, 839, 1195
BspFNI CGCG 1 cut(s) 1278
BspLI GGNNCC 4 cut(s) 22, 175, 563, 652
BspMI ACCTGC 1 cut(s) 477
BspPI GGATC 3 cut(s) 556, 569, 1399
BspQI GCTCTTC 1 cut(s) 1437
BspTNI GGTCTC 2 cut(s) 206, 383
BsrBI CCGCTC 1 cut(s) 165
BsrFI RCCGGY 1 cut(s) 150
BsrI ACTGG 1 cut(s) 1314
BssAI RCCGGY 1 cut(s) 150
BssECI CCNNGG 3 cut(s) 108, 565, 646
BssMI GATC 2 cut(s) 561, 1391
Bst2UI CCWGG 3 cut(s) 109, 567, 647
Bst4CI ACNGT 2 cut(s) 15, 668
Bst6I CTCTTC 1 cut(s) 1437
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 4 cut(s) 960, 971, 1190, 1328
BstDEI CTNAG 7 cut(s) 324, 405, 423, 736, 821, 826, 1203
BstF5I GGATG 4 cut(s) 594, 687, 850, 1105
BstFNI CGCG 1 cut(s) 1278
BstKTI GATC 2 cut(s) 564, 1394
BstMAI GTCTC 3 cut(s) 206, 383, 1408
BstMBI GATC 2 cut(s) 561, 1391
BstMWI GCNNNNNNNGC 3 cut(s) 787, 1336, 1373
BstNI CCWGG 3 cut(s) 109, 567, 647
BstNSI RCATGY 2 cut(s) 297, 1330
BstSCI CCNGG 4 cut(s) 107, 264, 565, 645
BstUI CGCG 1 cut(s) 1278
BstX2I RGATCY 1 cut(s) 561
BstXI CCANNNNNNTGG 1 cut(s) 558
BstYI RGATCY 1 cut(s) 561
Bsu36I CCTNAGG 1 cut(s) 423
BsuRI GGCC 4 cut(s) 66, 303, 997, 1192
BtgZI GCGATG 1 cut(s) 1293
BtsCI GGATG 4 cut(s) 594, 687, 850, 1105
BtsIMutI CAGTG 2 cut(s) 615, 1383
BveI ACCTGC 1 cut(s) 477
Cac8I GCNNGC 4 cut(s) 960, 971, 1190, 1328
Cfr10I RCCGGY 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 302, 767
Csp6I GTAC 3 cut(s) 466, 537, 1233
CspCI CAANNNNNGTGG 2 cut(s) 759, 794
CviQI GTAC 3 cut(s) 466, 537, 1233
DdeI CTNAG 7 cut(s) 324, 405, 423, 736, 821, 826, 1203
DpnI GATC 2 cut(s) 563, 1393
DpnII GATC 2 cut(s) 561, 1391
DraI TTTAAA 2 cut(s) 511, 939
DriI GACNNNNNGTC 1 cut(s) 1218
Eam1104I CTCTTC 1 cut(s) 1437
Eam1105I GACNNNNNGTC 1 cut(s) 1218
EarI CTCTTC 1 cut(s) 1437
Eco147I AGGCCT 1 cut(s) 997
Eco31I GGTCTC 2 cut(s) 206, 383
Eco32I GATATC 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 767
Eco57I CTGAAG 3 cut(s) 222, 363, 1407
Eco72I CACGTG 1 cut(s) 793
Eco81I CCTNAGG 1 cut(s) 423
EcoO109I RGGNCCY 1 cut(s) 302
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 3 cut(s) 107, 565, 645
EcoRV GATATC 1 cut(s) 262
FaqI GGGAC 3 cut(s) 32, 204, 802
FauI CCCGC 1 cut(s) 1162
Fnu4HI GCNGC 1 cut(s) 1374
FokI GGATG 4 cut(s) 581, 674, 857, 1092
Fsp4HI GCNGC 1 cut(s) 1374
FspBI CTAG 5 cut(s) 285, 299, 413, 600, 1100
GluI GCNGC 1 cut(s) 1374
GsuI CTGGAG 2 cut(s) 91, 151
HaeIII GGCC 4 cut(s) 66, 303, 997, 1192
HapII CCGG 4 cut(s) 151, 197, 221, 266
HincII GTYRAC 2 cut(s) 73, 133
HindII GTYRAC 2 cut(s) 73, 133
HindIII AAGCTT 1 cut(s) 95
HinfI GANTC 7 cut(s) 114, 179, 278, 418, 612, 884, 1016
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 4 cut(s) 151, 197, 221, 266
HphI GGTGA 1 cut(s) 331
Hpy166II GTNNAC 7 cut(s) 73, 133, 539, 770, 1085, 1233, 1261
Hpy188I TCNGA 6 cut(s) 178, 241, 343, 373, 611, 1033
Hpy188III TCNNGA 2 cut(s) 168, 422
Hpy8I GTNNAC 7 cut(s) 73, 133, 539, 770, 1085, 1233, 1261
HpyAV CCTTC 4 cut(s) 61, 246, 1307, 1382
HpyCH4III ACNGT 2 cut(s) 15, 668
HpyCH4IV ACGT 2 cut(s) 698, 792
HpyF10VI GCNNNNNNNGC 3 cut(s) 787, 1336, 1373
HpyF3I CTNAG 7 cut(s) 324, 405, 423, 736, 821, 826, 1203
HpySE526I ACGT 2 cut(s) 698, 792
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 2 cut(s) 561, 1391
LguI GCTCTTC 1 cut(s) 1437
LmnI GCTCC 5 cut(s) 20, 170, 313, 909, 1090
LweI GCATC 3 cut(s) 72, 238, 835
MaeI CTAG 5 cut(s) 285, 299, 413, 600, 1100
MaeII ACGT 2 cut(s) 698, 792
MaeIII GTNAC 4 cut(s) 275, 319, 613, 1064
MalI GATC 2 cut(s) 563, 1393
MbiI CCGCTC 1 cut(s) 165
MboI GATC 2 cut(s) 561, 1391
MboII GAAGA 6 cut(s) 586, 740, 1046, 1369, 1372, 1424
MfeI CAATTG 2 cut(s) 552, 1237
MflI RGATCY 1 cut(s) 561
MlyI GAGTC 3 cut(s) 173, 272, 621
MmeI TCCRAC 2 cut(s) 201, 1121
MseI TTAA 7 cut(s) 72, 158, 510, 693, 938, 1053, 1422
MslI CAYNNNNRTG 2 cut(s) 917, 1331
MspA1I CMGCKG 1 cut(s) 1169
MspI CCGG 4 cut(s) 151, 197, 221, 266
MspR9I CCNGG 4 cut(s) 109, 266, 567, 647
MunI CAATTG 2 cut(s) 552, 1237
MvaI CCWGG 3 cut(s) 109, 567, 647
MvnI CGCG 1 cut(s) 1278
MwoI GCNNNNNNNGC 3 cut(s) 787, 1336, 1373
NciI CCSGG 1 cut(s) 266
NdeII GATC 2 cut(s) 561, 1391
NlaIV GGNNCC 4 cut(s) 22, 175, 563, 652
NmuCI GTSAC 3 cut(s) 275, 319, 613
NspI RCATGY 2 cut(s) 297, 1330
PaeI GCATGC 1 cut(s) 1330
PceI AGGCCT 1 cut(s) 997
PciI ACATGT 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 1437
PfeI GAWTC 4 cut(s) 114, 418, 884, 1016
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 1 cut(s) 1375
PleI GAGTC 3 cut(s) 173, 272, 620
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 3 cut(s) 173, 272, 620
Ppu21I YACGTR 1 cut(s) 793
PscI ACATGT 1 cut(s) 293
Psp6I CCWGG 3 cut(s) 107, 565, 645
PspCI CACGTG 1 cut(s) 793
PspGI CCWGG 3 cut(s) 107, 565, 645
PspN4I GGNNCC 4 cut(s) 22, 175, 563, 652
PspPI GGNCC 2 cut(s) 302, 767
PsuI RGATCY 1 cut(s) 561
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 3 cut(s) 467, 538, 1234
RsaNI GTAC 3 cut(s) 466, 537, 1233
RseI CAYNNNNRTG 2 cut(s) 917, 1331
SapI GCTCTTC 1 cut(s) 1437
SaqAI TTAA 7 cut(s) 72, 158, 510, 693, 938, 1053, 1422
SatI GCNGC 1 cut(s) 1374
Sau3AI GATC 2 cut(s) 561, 1391
Sau96I GGNCC 2 cut(s) 302, 767
SchI GAGTC 3 cut(s) 173, 272, 621
ScrFI CCNGG 4 cut(s) 109, 266, 567, 647
SfaNI GCATC 3 cut(s) 72, 238, 835
SgrAI CRCCGGYG 1 cut(s) 150
SinI GGWCC 1 cut(s) 767
SmiMI CAYNNNNRTG 2 cut(s) 917, 1331
SmlI CTYRAG 1 cut(s) 587
SmoI CTYRAG 1 cut(s) 587
SphI GCATGC 1 cut(s) 1330
SseBI AGGCCT 1 cut(s) 997
SsiI CCGC 4 cut(s) 118, 163, 1169, 1373
SspMI CTAG 5 cut(s) 285, 299, 413, 600, 1100
StuI AGGCCT 1 cut(s) 997
StyD4I CCNGG 4 cut(s) 107, 264, 565, 645
TaaI ACNGT 2 cut(s) 15, 668
TaiI ACGT 2 cut(s) 701, 795
TaqI TCGA 5 cut(s) 8, 543, 639, 858, 1044
TauI GCSGC 1 cut(s) 1376
TfiI GAWTC 4 cut(s) 114, 418, 884, 1016
Tru1I TTAA 7 cut(s) 72, 158, 510, 693, 938, 1053, 1422
Tru9I TTAA 7 cut(s) 72, 158, 510, 693, 938, 1053, 1422
TscAI CASTG 2 cut(s) 622, 1390
TseFI GTSAC 3 cut(s) 275, 319, 613
Tsp45I GTSAC 3 cut(s) 275, 319, 613
TspDTI ATGAA 5 cut(s) 448, 514, 531, 587, 720
TspRI CASTG 2 cut(s) 622, 1390
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 1 cut(s) 767
XapI RAATTY 5 cut(s) 520, 707, 944, 1037, 1144
XceI RCATGY 2 cut(s) 297, 1330
XspI CTAG 5 cut(s) 285, 299, 413, 600, 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.