Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

25045855 .. 25047742

Gene Structure 1888 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ48635

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGATTTGGGAGGGAAGCTGCAAAGGAACTAGGGATTCCTGAGGTTCAGTTTTGGACCGCTTCTGCTTGTGGCTTCATGGCGTACCTGCAATATAGAGAACTTGTTAAACGAGGCATTGTTCCATTCAAAGATAGAAGTTTCATGCAAGATGGTACACTGGATAAGCCAATTGATTGGATCCCGGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTGATGTCAACGACATAATGTTCGACTTCTTGAGATCCGAAGCACAAAACTGCTTGAAATCCTCTGCAATCATCCTCAACACGTTTGACGAATTTGAGCATGAAGTGTTAGAAGAAATCTCAGCCATGTTTCCCAGCATTTACACAATAGGTCCACTTGCTTTGCTTGGTAGGCACGTGCCTGAAAACAAATTGGTCAAGTCCCTCAGCTCAGGCTTATGGAAAGAAGATACAAAATGCCTTGAATGGCTTGACAAACAGAAACCAAATTCGGTTGTGTATGTGAATTATGGGTGCATAACTATGATGACAGACCAACATTTGAATGAATTTGCATGGGGGCTTGCAAATAGCAAGCACCACTTTTTGTGGATTGTTAGGCCTGATGTGGTAAAAGGGGATTCGGTTGTCTTGCCCGAAGAATGTTTCGAGATCAAGGATAGGGGTTACATAGCAAGTTGGTGTCCACAGGAGCAAGTGCTAGCGCATCCATCAGTCGGGGTTTTTCTAACTCATTGTGGTTGGAATTCTACTATTGAAACTATATCAGCGGGTGTGCCTGTAATTTGCTGGCCTTTCTTTGCTGAGCAACAGACGAATTGTCGTTTCCTGTGTACCAATTGGGGAATTGGTATGGAGGTAAACAATGATGTTAAACGCGATGAGATTGAAGTGCTTGTCAAGGAAATGCTGGAAGGGGAAAAAGGGATGCAGATGAGGCAAAAGGCAAAGGAATGGAAGAAGAAAGCAATAGCGGCTACTGACACTGGAGGATCATCATACAATAATTTTGAGAGACTGATTAAGGAGGCTCTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

351

Amino Acids

40.07

Weight (kDa)

5.52

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	48 - 312	4.5e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	96
AccII	CGCG	1 cut(s)	894
AciI	CCGC	3 cut(s)	60, 785, 989
AclWI	GGATC	4 cut(s)	175, 188, 264, 1015
AcsI	RAATTY	4 cut(s)	326, 502, 563, 760
AcvI	CACGTG	1 cut(s)	412
AfaI	GTAC	3 cut(s)	86, 157, 850
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	6 cut(s)	130, 292, 479, 559, 773, 905
AhdI	GACNNNNNGTC	1 cut(s)	834
AluBI	AGCT	3 cut(s)	20, 222, 444
AluI	AGCT	3 cut(s)	20, 222, 444
Alw26I	GTCTC	1 cut(s)	1024
AlwI	GGATC	4 cut(s)	175, 188, 264, 1015
Ama87I	CYCGRG	1 cut(s)	184
AoxI	GGCC	2 cut(s)	614, 806
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	4 cut(s)	326, 502, 563, 760
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	721
AspS9I	GGNCC	2 cut(s)	57, 386
AsuC2I	CCSGG	2 cut(s)	185, 186
AsuNHI	GCTAGC	1 cut(s)	715
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	2 cut(s)	57, 386
AxyI	CCTNAGG	1 cut(s)	42
BamHI	GGATCC	1 cut(s)	180
BbrPI	CACGTG	1 cut(s)	412
BbvCI	CCTCAGC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	146, 733
BcnI	CCSGG	2 cut(s)	185, 186
BcoDI	GTCTC	1 cut(s)	1024
BfaI	CTAG	3 cut(s)	32, 219, 716
BfuAI	ACCTGC	1 cut(s)	96
BisI	GCNGC	2 cut(s)	21, 990
BlpI	GCTNAGC	1 cut(s)	819
BlsI	GCNGC	2 cut(s)	22, 991
Bme1390I	CCNGG	2 cut(s)	185, 186
Bme18I	GGWCC	2 cut(s)	57, 386
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	2 cut(s)	57, 386
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	185, 186
BmsI	GCATC	2 cut(s)	730, 933
BmtI	GCTAGC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	1023
Bpu10I	CCTNAGC	2 cut(s)	440, 445
Bpu1102I	GCTNAGC	1 cut(s)	819
BpuEI	CTTGAG	2 cut(s)	191, 286
BpuMI	CCSGG	2 cut(s)	185, 186
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse1I	ACTGG	2 cut(s)	165, 1006
Bse21I	CCTNAGG	1 cut(s)	42
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	4 cut(s)	213, 306, 721, 948
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	5 cut(s)	33, 369, 454, 459, 810
BseNI	ACTGG	2 cut(s)	165, 1006
BseXI	GCAGC	1 cut(s)	7
BseYI	CCCAGC	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	894
BshFI	GGCC	2 cut(s)	616, 808
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	1 cut(s)	1024
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	616, 808
BsoBI	CYCGRG	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	180, 269, 666, 1007
Bsp1720I	GCTNAGC	1 cut(s)	819
BspACI	CCGC	3 cut(s)	60, 785, 989
BspANI	GGCC	2 cut(s)	616, 808
BspCNI	CTCAG	5 cut(s)	34, 368, 453, 458, 811
BspFNI	CGCG	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	182
BspMI	ACCTGC	1 cut(s)	96
BspOI	GCTAGC	1 cut(s)	719
BspPI	GGATC	4 cut(s)	175, 188, 264, 1015
BspQI	GCTCTTC	1 cut(s)	1053
BsrI	ACTGG	2 cut(s)	165, 1006
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	4 cut(s)	180, 269, 666, 1007
Bst6I	CTCTTC	1 cut(s)	1053
BstBAI	YACGTR	1 cut(s)	412
BstC8I	GCNNGC	4 cut(s)	579, 590, 717, 806
BstDEI	CTNAG	5 cut(s)	42, 355, 440, 445, 819
BstF5I	GGATG	4 cut(s)	213, 306, 721, 948
BstFNI	CGCG	1 cut(s)	894
BstHHI	GCGC	1 cut(s)	721
BstKTI	GATC	4 cut(s)	183, 272, 669, 1010
BstMAI	GTCTC	1 cut(s)	1024
BstMBI	GATC	4 cut(s)	180, 269, 666, 1007
BstMWI	GCNNNNNNNGC	3 cut(s)	406, 952, 989
BstSCI	CCNGG	2 cut(s)	183, 184
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	2 cut(s)	180, 269
BstXI	CCANNNNNNTGG	1 cut(s)	177
BstYI	RGATCY	2 cut(s)	180, 269
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	616, 808
BtgZI	GCGATG	1 cut(s)	909
BtsCI	GGATG	4 cut(s)	213, 306, 721, 948
BtsIMutI	CAGTG	3 cut(s)	158, 234, 999
BveI	ACCTGC	1 cut(s)	96
Cac8I	GCNNGC	4 cut(s)	579, 590, 717, 806
CfoI	GCGC	1 cut(s)	721
Cfr13I	GGNCC	2 cut(s)	57, 386
Cfr9I	CCCGGG	1 cut(s)	184
Csp6I	GTAC	3 cut(s)	85, 156, 849
CspCI	CAANNNNNGTGG	2 cut(s)	378, 413
CviAII	CATG	6 cut(s)	79, 145, 190, 335, 361, 570
CviQI	GTAC	3 cut(s)	85, 156, 849
DdeI	CTNAG	5 cut(s)	42, 355, 440, 445, 819
DpnI	GATC	4 cut(s)	182, 271, 668, 1009
DpnII	GATC	4 cut(s)	180, 269, 666, 1007
DriI	GACNNNNNGTC	1 cut(s)	834
Eam1104I	CTCTTC	1 cut(s)	1053
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	1 cut(s)	1053
Eco147I	AGGCCT	1 cut(s)	616
Eco47I	GGWCC	2 cut(s)	57, 386
Eco72I	CACGTG	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	42
Eco88I	CYCGRG	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	760
FaeI	CATG	6 cut(s)	82, 148, 193, 338, 364, 573
FalI	AAGNNNNNCTT	2 cut(s)	581, 613
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	6 cut(s)	78, 144, 189, 334, 360, 569
FauI	CCCGC	1 cut(s)	778
Fnu4HI	GCNGC	2 cut(s)	21, 990
FokI	GGATG	4 cut(s)	200, 293, 708, 955
Fsp4HI	GCNGC	2 cut(s)	21, 990
FspBI	CTAG	3 cut(s)	32, 219, 716
GlaI	GCGC	1 cut(s)	720
GluI	GCNGC	2 cut(s)	21, 990
GsaI	CCCAGC	1 cut(s)	372
GsuI	CTGGAG	1 cut(s)	1023
HaeIII	GGCC	2 cut(s)	616, 808
HapII	CCGG	1 cut(s)	185
HhaI	GCGC	1 cut(s)	721
Hin1II	CATG	6 cut(s)	82, 148, 193, 338, 364, 573
Hin6I	GCGC	1 cut(s)	719
HinP1I	GCGC	1 cut(s)	719
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	37, 231, 635
HpaII	CCGG	1 cut(s)	185
Hpy166II	GTNNAC	6 cut(s)	158, 244, 389, 701, 849, 877
Hpy188I	TCNGA	2 cut(s)	230, 274
Hpy188III	TCNNGA	3 cut(s)	41, 265, 664
Hpy8I	GTNNAC	6 cut(s)	158, 244, 389, 701, 849, 877
HpyAV	CCTTC	1 cut(s)	923
HpyCH4IV	ACGT	2 cut(s)	317, 411
HpyCH4V	TGCA	8 cut(s)	23, 91, 148, 302, 531, 569, 581, 946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	406, 952, 989
HpyF3I	CTNAG	5 cut(s)	42, 355, 440, 445, 819
HpySE526I	ACGT	2 cut(s)	317, 411
Hsp92II	CATG	6 cut(s)	82, 148, 193, 338, 364, 573
HspAI	GCGC	1 cut(s)	719
Kzo9I	GATC	4 cut(s)	180, 269, 666, 1007
LguI	GCTCTTC	1 cut(s)	1053
LmnI	GCTCC	1 cut(s)	706
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	2 cut(s)	730, 933
MaeI	CTAG	3 cut(s)	32, 219, 716
MaeII	ACGT	2 cut(s)	317, 411
MaeIII	GTNAC	2 cut(s)	232, 680
MalI	GATC	4 cut(s)	182, 271, 668, 1009
MboI	GATC	4 cut(s)	180, 269, 666, 1007
MboII	GAAGA	7 cut(s)	205, 359, 473, 665, 985, 988, 1040
MfeI	CAATTG	2 cut(s)	171, 853
MflI	RGATCY	2 cut(s)	180, 269
MlyI	GAGTC	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	737
MseI	TTAA	3 cut(s)	108, 888, 1038
MslI	CAYNNNNRTG	2 cut(s)	536, 558
MspA1I	CMGCKG	1 cut(s)	785
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	2 cut(s)	185, 186
MunI	CAATTG	2 cut(s)	171, 853
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	3 cut(s)	406, 952, 989
NciI	CCSGG	2 cut(s)	185, 186
NdeII	GATC	4 cut(s)	180, 269, 666, 1007
NheI	GCTAGC	1 cut(s)	715
NlaIII	CATG	6 cut(s)	82, 148, 193, 338, 364, 573
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	616
PciSI	GCTCTTC	1 cut(s)	1053
PfeI	GAWTC	2 cut(s)	37, 635
PkrI	GCNGC	2 cut(s)	22, 991
PleI	GAGTC	1 cut(s)	239
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	239
Ppu21I	YACGTR	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	368
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	2 cut(s)	57, 386
PsuI	RGATCY	2 cut(s)	180, 269
RsaI	GTAC	3 cut(s)	86, 157, 850
RsaNI	GTAC	3 cut(s)	85, 156, 849
RseI	CAYNNNNRTG	2 cut(s)	536, 558
SapI	GCTCTTC	1 cut(s)	1053
SaqAI	TTAA	3 cut(s)	108, 888, 1038
SatI	GCNGC	2 cut(s)	21, 990
Sau3AI	GATC	4 cut(s)	180, 269, 666, 1007
Sau96I	GGNCC	2 cut(s)	57, 386
SchI	GAGTC	1 cut(s)	240
ScrFI	CCNGG	2 cut(s)	185, 186
SetI	ASST	9 cut(s)	22, 48, 90, 224, 320, 388, 414, 446, 876
SfaNI	GCATC	2 cut(s)	730, 933
SinI	GGWCC	2 cut(s)	57, 386
SmaI	CCCGGG	1 cut(s)	186
SmiMI	CAYNNNNRTG	2 cut(s)	536, 558
SmlI	CTYRAG	2 cut(s)	206, 265
SmoI	CTYRAG	2 cut(s)	206, 265
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	3 cut(s)	60, 785, 989
SspMI	CTAG	3 cut(s)	32, 219, 716
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	2 cut(s)	183, 184
TaiI	ACGT	2 cut(s)	320, 414
TaqI	TCGA	2 cut(s)	258, 663
TauI	GCSGC	1 cut(s)	992
TfiI	GAWTC	2 cut(s)	37, 635
Tru1I	TTAA	3 cut(s)	108, 888, 1038
Tru9I	TTAA	3 cut(s)	108, 888, 1038
TscAI	CASTG	3 cut(s)	165, 241, 1006
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	5 cut(s)	67, 133, 206, 351, 576
TspMI	CCCGGG	1 cut(s)	184
TspRI	CASTG	3 cut(s)	165, 241, 1006
VpaK11BI	GGWCC	2 cut(s)	57, 386
XapI	RAATTY	4 cut(s)	326, 502, 563, 760
XmaI	CCCGGG	1 cut(s)	184
XspI	CTAG	3 cut(s)	32, 219, 716

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.