MD11G1246000.v1.1

Belongs to the UDP-glycosyltransferase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
Physical Location & Seq
Reverse (-)
35741749 .. 35743934
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1246000.v1.1.491

Sequence Viewer

Length: 1443 bp
ATGATGAGTTCAGTAGAAAAAGCAACCAAAAAAGGGCATGCAGTTTTTGTCCCATACCCAGCACAAGGCCATGTTAACCCCATGATGCAGTTAGCCAAGTTTCTTCACTCAAGGGGCTTCCACATAACCTTTGTCAACACCGAGTTCAACCACAACCGTTTAATCCGGTCAAAAGGTCTCGACTCCGTTAAGGGTCTGCCGGACTTTGTGTTCGAAACAATACCAGACGGGTTGCCTCCTTCGGATAAGGATGGGACCCAAGATATTCCAGCTTTATGTGACTCCATTAAGAAAACTTGTTTTGGTCCATTTAAAGAGCTGGTGGCTAAGATTAATTCCTCATCTCAAGTGCCACAAGTTACTTGCATTGTTGCAGATGGTGCCATGACCTTTGGGTGCAAAGCTGCTAGAGAATTAGGCATTCCGGAGGTTGTGTTATGGACTGCATCTGCTTGTGGCTTCATGGGGTACTTGCAATACAACGAACTCGTCAAACGTGGCATGATTCCCTTCAAAGATGAGAATTTCATGCATGATGGCACACTCGATACACCAATTGATTGGATCCCAGGCATGAAAAATGTTCGACTCAAGGACATCCCGAGTTTCGTTAGAGTTACTGATCTCAGCGACATAATGTTTAATTACTTGGGATCCGAAGCACGAAGCTGTTTAAACTCTTCTGCAATCCTCTTCAACACATTTGATGAATTTGAACACGAAGTGTTAGAGGCAATATCGATAATGTTTCCCAACATTTACACCATTGGCCCCTTTAATTTGCTGGGCAGGCATTTCCCCGAAAGCAAGTCACTTAACTCAAGCTTATGGAAAGAAGACGCAAAATGTTTGGAATGGCTTGATAAAAAGAAACCCAATTCAGTTGTGTATGTAAATTATGGTAGCATAACGATGATGACAGACCAACATTTGATCGAGTTTGCATGGGGGCTGGCAAATAGCAAGCACCCATTTTTATGGATAGTTAGGGCTGACGTGGTAAAGGGTGACTCACCAATTTTACCTGATGAATTTTTTGAGGAGATTAAGGATAGGGGTTATATTGCAGGTTGGTGTGCACAGGACCAAGTGTTAGCTCATCCATCTGTTGGGGTTTTCCTAACACACAGTGGTTGGAATTCTACAATTGAAAGTATATCTCATGGTGTGGCCGTAATTTGCTGGCCTTTCTTTGCGGAGCAACAAACGAATTGTCGGTACTCATGCACAACATGGGAGATTGGAATGGAGGTGAGCCCCGATGTGAAGCGTGACGAAATAGAAGCACTTGTTAAGGAAATGATGGAAGGTGAAGGAGGGATAAAGATGAGGGAAAAGGCAAGGGAATGGAAGAAAAAAGCTATTGAAGCTACTGATGTTGGAGGATCATCGTACAATAATTTTGAGAGATTGTTTAAGGAGGTACTCCAACTTGGTGAATGA

Protein Analysis

481

Amino Acids

54.02

Weight (kDa)

5.55

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_N PF26168 15 - 62 1.5e-07 Glycosyltransferase, N-terminal domain
UDPGT PF00201 69 - 437 2.1e-24 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1058
AccB1I GGYRCC 1 cut(s) 380
AccB7I CCANNNNNTGG 1 cut(s) 1109
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 1 cut(s) 1196
AclWI GGATC 5 cut(s) 559, 572, 648, 661, 1393
AcoI YGGCCR 1 cut(s) 1170
AcsI RAATTY 4 cut(s) 523, 710, 1031, 1138
AdeI CACNNNGTG 2 cut(s) 724, 1130
AfaI GTAC 4 cut(s) 470, 1220, 1394, 1425
AfiI CCNNNNNNNGG 3 cut(s) 33, 65, 1109
AgsI TTSAA 6 cut(s) 148, 514, 697, 716, 1151, 1367
AjiI CACGTC 1 cut(s) 997
AjnI CCWGG 1 cut(s) 568
AloI GAACNNNNNNTCC 2 cut(s) 194, 226
AluBI AGCT 8 cut(s) 272, 319, 404, 669, 825, 1097, 1361, 1370
AluI AGCT 8 cut(s) 272, 319, 404, 669, 825, 1097, 1361, 1370
Alw21I GWGCWC 1 cut(s) 1081
Alw26I GTCTC 1 cut(s) 182
Alw44I GTGCAC 1 cut(s) 1077
AlwI GGATC 5 cut(s) 559, 572, 648, 661, 1393
Ama87I CYCGRG 1 cut(s) 601
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 4 cut(s) 67, 769, 1170, 1184
ApaLI GTGCAC 1 cut(s) 1077
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 4 cut(s) 523, 710, 1031, 1138
ArsI GACNNNNNNTTYG 4 cut(s) 194, 226, 1198, 1230
AseI ATTAAT 1 cut(s) 333
AspS9I GGNCC 4 cut(s) 255, 305, 770, 1084
AsuHPI GGTGA 4 cut(s) 1005, 1019, 1264, 1322
AsuII TTCGAA 1 cut(s) 213
AvaI CYCGRG 1 cut(s) 601
AvaII GGWCC 3 cut(s) 255, 305, 1084
BaeGI GKGCMC 1 cut(s) 1081
BamHI GGATCC 2 cut(s) 564, 653
BanI GGYRCC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 1259
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 1081
BbvI GCAGC 1 cut(s) 391
BccI CCATC 5 cut(s) 245, 371, 530, 1111, 1297
BceAI ACGGC 1 cut(s) 1157
BciT130I CCWGG 1 cut(s) 570
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 408
BfuAI ACCTGC 1 cut(s) 1058
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 570
Bme18I GGWCC 3 cut(s) 255, 305, 1084
BmeT110I CYCGRG 1 cut(s) 601
BmgBI CACGTC 1 cut(s) 997
BmgT120I GGNCC 4 cut(s) 255, 305, 770, 1084
BmiI GGNNCC 6 cut(s) 256, 257, 382, 566, 655, 772
BmrFI CCNGG 1 cut(s) 570
BmsI GCATC 2 cut(s) 75, 455
BpiI GAAGAC 1 cut(s) 843
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 4 cut(s) 94, 330, 575, 805
Bsa29I ATCGAT 1 cut(s) 740
BsaI GGTCTC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 568
BsaWI WCCGGW 2 cut(s) 165, 424
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bsc4I CCNNNNNNNGG 3 cut(s) 33, 65, 1109
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 570
BseCI ATCGAT 1 cut(s) 740
BseDI CCNNGG 1 cut(s) 568
BseGI GGATG 3 cut(s) 256, 597, 1099
BseLI CCNNNNNNNGG 3 cut(s) 33, 65, 1109
BseMII CTCAG 1 cut(s) 640
BseRI GAGGAG 1 cut(s) 1055
BseSI GKGCMC 1 cut(s) 1081
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 2 cut(s) 58, 784
BshFI GGCC 4 cut(s) 69, 771, 1172, 1186
BshNI GGYRCC 1 cut(s) 380
BshVI ATCGAT 1 cut(s) 740
BsiHKAI GWGCWC 1 cut(s) 1081
BsiHKCI CYCGRG 1 cut(s) 601
BsiSI CCGG 3 cut(s) 166, 200, 425
BslFI GGGAC 2 cut(s) 35, 268
BslI CCNNNNNNNGG 3 cut(s) 33, 65, 1109
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 35, 268
BsmI GAATGC 1 cut(s) 420
BsnI GGCC 4 cut(s) 69, 771, 1172, 1186
Bso31I GGTCTC 1 cut(s) 182
BsoBI CYCGRG 1 cut(s) 601
Bsp119I TTCGAA 1 cut(s) 213
Bsp1286I GDGCHC 2 cut(s) 1081, 1259
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 5 cut(s) 564, 622, 653, 933, 1385
BspACI CCGC 1 cut(s) 1196
BspANI GGCC 4 cut(s) 69, 771, 1172, 1186
BspCNI CTCAG 1 cut(s) 639
BspDI ATCGAT 1 cut(s) 740
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 6 cut(s) 256, 257, 382, 566, 655, 772
BspMI ACCTGC 1 cut(s) 1058
BspPI GGATC 5 cut(s) 559, 572, 648, 661, 1393
BspT104I TTCGAA 1 cut(s) 213
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 568
BssMI GATC 5 cut(s) 564, 622, 653, 933, 1385
Bst2UI CCWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 158, 1130
Bst6I CTCTTC 2 cut(s) 685, 698
BstAPI GCANNNNNTGC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 5 cut(s) 39, 791, 954, 965, 1184
BstDEI CTNAG 2 cut(s) 327, 626
BstF5I GGATG 3 cut(s) 256, 597, 1099
BstKTI GATC 5 cut(s) 567, 625, 656, 936, 1388
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 5 cut(s) 564, 622, 653, 933, 1385
BstMWI GCNNNNNNNGC 3 cut(s) 380, 790, 1367
BstNI CCWGG 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 1081
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 2 cut(s) 564, 653
BstXI CCANNNNNNTGG 2 cut(s) 561, 978
BstYI RGATCY 2 cut(s) 564, 653
Bsu15I ATCGAT 1 cut(s) 740
BsuRI GGCC 4 cut(s) 69, 771, 1172, 1186
BsuTUI ATCGAT 1 cut(s) 740
BtrI CACGTC 1 cut(s) 997
BtsCI GGATG 3 cut(s) 256, 597, 1099
BtsIMutI CAGTG 1 cut(s) 1135
BveI ACCTGC 1 cut(s) 1058
Cac8I GCNNGC 5 cut(s) 39, 791, 954, 965, 1184
Cfr13I GGNCC 4 cut(s) 255, 305, 770, 1084
ClaI ATCGAT 1 cut(s) 740
CseI GACGC 1 cut(s) 848
Csp6I GTAC 4 cut(s) 469, 1219, 1393, 1424
CviQI GTAC 4 cut(s) 469, 1219, 1393, 1424
DdeI CTNAG 2 cut(s) 327, 626
DpnI GATC 5 cut(s) 566, 624, 655, 935, 1387
DpnII GATC 5 cut(s) 564, 622, 653, 933, 1385
DraI TTTAAA 2 cut(s) 313, 675
DraIII CACNNNGTG 2 cut(s) 724, 1130
EaeI YGGCCR 1 cut(s) 1170
Eam1104I CTCTTC 2 cut(s) 685, 698
EarI CTCTTC 2 cut(s) 685, 698
Eco24I GRGCYC 1 cut(s) 1259
Eco31I GGTCTC 1 cut(s) 182
Eco47I GGWCC 3 cut(s) 255, 305, 1084
Eco88I CYCGRG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 255
EcoRI GAATTC 1 cut(s) 1138
EcoRII CCWGG 1 cut(s) 568
EcoT22I ATGCAT 1 cut(s) 534
EcoT38I GRGCYC 1 cut(s) 1259
FaqI GGGAC 2 cut(s) 35, 268
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 3 cut(s) 263, 584, 1086
FriOI GRGCYC 1 cut(s) 1259
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 408
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 2 cut(s) 62, 788
HaeIII GGCC 4 cut(s) 69, 771, 1172, 1186
HapII CCGG 3 cut(s) 166, 200, 425
HgaI GACGC 1 cut(s) 848
HincII GTYRAC 2 cut(s) 76, 136
HindII GTYRAC 2 cut(s) 76, 136
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 5 cut(s) 182, 281, 505, 588, 1010
HpaI GTTAAC 1 cut(s) 76
HpaII CCGG 3 cut(s) 166, 200, 425
HphI GGTGA 4 cut(s) 1005, 1019, 1264, 1322
Hpy166II GTNNAC 3 cut(s) 76, 136, 1079
Hpy188I TCNGA 2 cut(s) 244, 658
Hpy188III TCNNGA 3 cut(s) 179, 425, 601
Hpy8I GTNNAC 3 cut(s) 76, 136, 1079
HpyAV CCTTC 4 cut(s) 249, 520, 1301, 1307
HpyCH4III ACNGT 2 cut(s) 158, 1130
HpyCH4IV ACGT 2 cut(s) 496, 996
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 790, 1367
HpyF3I CTNAG 2 cut(s) 327, 626
HpySE526I ACGT 2 cut(s) 496, 996
KflI GGGWCCC 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 424
KspAI GTTAAC 1 cut(s) 76
Kzo9I GATC 5 cut(s) 564, 622, 653, 933, 1385
LmnI GCTCC 1 cut(s) 1198
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 2 cut(s) 75, 455
MaeI CTAG 1 cut(s) 408
MaeII ACGT 2 cut(s) 496, 996
MaeIII GTNAC 6 cut(s) 278, 358, 616, 810, 1007, 1271
MalI GATC 5 cut(s) 566, 624, 655, 935, 1387
MboI GATC 5 cut(s) 564, 622, 653, 933, 1385
MboII GAAGA 5 cut(s) 95, 672, 685, 848, 1363
MfeI CAATTG 2 cut(s) 555, 1146
MflI RGATCY 2 cut(s) 564, 653
MhlI GDGCHC 2 cut(s) 1081, 1259
MlyI GAGTC 4 cut(s) 176, 275, 582, 1004
MmeI TCCRAC 2 cut(s) 1115, 1360
Mph1103I ATGCAT 1 cut(s) 534
MroI TCCGGA 1 cut(s) 424
MslI CAYNNNNRTG 2 cut(s) 911, 976
MspI CCGG 3 cut(s) 166, 200, 425
MspR9I CCNGG 1 cut(s) 570
MssI GTTTAAAC 1 cut(s) 675
MunI CAATTG 2 cut(s) 555, 1146
Mva1269I GAATGC 1 cut(s) 420
MvaI CCWGG 1 cut(s) 570
MwoI GCNNNNNNNGC 3 cut(s) 380, 790, 1367
NdeII GATC 5 cut(s) 564, 622, 653, 933, 1385
NlaIV GGNNCC 6 cut(s) 256, 257, 382, 566, 655, 772
NmuCI GTSAC 4 cut(s) 278, 810, 1007, 1271
NsiI ATGCAT 1 cut(s) 534
NspI RCATGY 1 cut(s) 41
NspV TTCGAA 1 cut(s) 213
PaeI GCATGC 1 cut(s) 41
PctI GAATGC 1 cut(s) 420
PfeI GAWTC 1 cut(s) 505
PflMI CCANNNNNTGG 1 cut(s) 1109
PkrI GCNGC 1 cut(s) 406
PleI GAGTC 4 cut(s) 176, 275, 582, 1004
PmeI GTTTAAAC 1 cut(s) 675
PpsI GAGTC 4 cut(s) 176, 275, 582, 1004
PpuMI RGGWCCY 1 cut(s) 255
PshBI ATTAAT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 568
PspFI CCCAGC 2 cut(s) 58, 784
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 6 cut(s) 256, 257, 382, 566, 655, 772
PspPI GGNCC 4 cut(s) 255, 305, 770, 1084
PspPPI RGGWCCY 1 cut(s) 255
PsuI RGATCY 2 cut(s) 564, 653
RsaI GTAC 4 cut(s) 470, 1220, 1394, 1425
RsaNI GTAC 4 cut(s) 469, 1219, 1393, 1424
RseI CAYNNNNRTG 2 cut(s) 911, 976
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 5 cut(s) 564, 622, 653, 933, 1385
Sau96I GGNCC 4 cut(s) 255, 305, 770, 1084
SchI GAGTC 4 cut(s) 176, 275, 582, 1004
ScrFI CCNGG 1 cut(s) 570
SduI GDGCHC 2 cut(s) 1081, 1259
SfaNI GCATC 2 cut(s) 75, 455
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 3 cut(s) 255, 305, 1084
SmiMI CAYNNNNRTG 2 cut(s) 911, 976
SmlI CTYRAG 4 cut(s) 109, 345, 590, 820
SmoI CTYRAG 4 cut(s) 109, 345, 590, 820
SphI GCATGC 1 cut(s) 41
SsiI CCGC 1 cut(s) 1196
SspMI CTAG 1 cut(s) 408
StyD4I CCNGG 1 cut(s) 568
TaaI ACNGT 2 cut(s) 158, 1130
TaiI ACGT 2 cut(s) 499, 999
TaqI TCGA 6 cut(s) 180, 213, 546, 586, 740, 936
TfiI GAWTC 1 cut(s) 505
TscAI CASTG 1 cut(s) 1135
TseFI GTSAC 4 cut(s) 278, 810, 1007, 1271
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 4 cut(s) 278, 810, 1007, 1271
TspDTI ATGAA 5 cut(s) 451, 517, 590, 723, 1044
TspGWI ACGGA 1 cut(s) 175
TspRI CASTG 1 cut(s) 1135
Van91I CCANNNNNTGG 1 cut(s) 1109
VneI GTGCAC 1 cut(s) 1077
VpaK11BI GGWCC 3 cut(s) 255, 305, 1084
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 4 cut(s) 523, 710, 1031, 1138
XceI RCATGY 1 cut(s) 41
XspI CTAG 1 cut(s) 408
Zsp2I ATGCAT 1 cut(s) 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.