Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

25885897 .. 25892317

Gene Structure 6421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG251400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1446 bp

ATGGGTTCGACACAGTTAGGAGCCAAAGAACTGCATGCAGTCTGCGTCCCTTTCCCAGCACAAGGCCATGTTAACCCCATGATGCAATTAGCCAAGCTTCTGCACTCCAGGGGATTCCGCATAACATTTGTCAACACTGAGTTCAACCACCGGCGTTTAATCCGATCCAGAGGTTCCGACTCTGTCAAGGGACTACCGGACTTCCAATTCGAGACCATACCGGACGGGTTGCCACCTTCAGATAAAGATGCAACACAAGATGTCCCAGCTATATGTGACTCCACCAGGAAAACATGTCAAGGCCCTTTCAAGGAGCTGGTGACTAAGCTCAATTCCTCATCTGAAGTGCCACAGATTACTTGTATAGTTTCTGATGGTCTCACGGGATTTGGGAGGGAAGTTGCTAAGGAACTAGGGATTCCTGAGGTTCAGTTTTGGACTGCTTCTGCTTGTGGCTTCATGGCGTACCTGCAATACAGCGAACTCGTCAAACGAGGCATTGTGCCATTTAAAGATGAAAATTTCATGCAAGATGGTTCACTCGACAAGCCAATTGATTGGATCCCAGGCATGAAGAATATGAGGCTCAAGGACATCCCTAGCTTTATCAGAGTCACTGATGTCAATGACATAATGTTCGACTTCCAGGGAACCGAAGCACAAAACTGTTTGAAATCCTCTGCAATCATCCTCAACACGTTTGACGAATTTGAGCATGATGTGTTAGAAGAAATCTTAGCCATGTTTCCCAACATTTACACAATTGGTCCACTTGCTTTGCTTGGTAGGCACGTGCTTGAAAACGAATTGGTCAAGTCCCTCAGCTCAGGCTTATGGAAAGAAGATACAAAATGCCTCGAATGGCTTGACAAACAGAAACCCGACTCGGTTGTGTATGTGAATTATGGGAGCGTAACTATGATGACAGACCAACATTTGAAAGAATTTGCATGGGGGCTTGCAAATAGCAAGAACCATTTTTTGTGGATTGTTAGGCCTGATGTGGTAAAAGGGGATTCGGTTCTCTTGTCCGAAGAATTTTTCGAGGAGATTAAGGATAGGGGTTACATAGCAAGTTGGTGTCCACAGGAGCAAGTTCTAGCACATCCATCGGTCGGGGTTTTTCTAACTCATTGCGGTTGGAATTCTACTATTGAATCTATATCAGAGGGTGTGCCTGTAATTTGCTGGCATTTCTTTGCTGAGCAACAGACGAATTGTCGTTTCCTGTGTACTGATTGGGGAATAGGTATGGAGGTGAACAACGATGTTAAACGCGACGAGATTAAAGCGCTTGTTAAGGAAATGCTGGAAGGGGAAAAAGGCGTGAAGATGAGGCAAAAGGCTAAGGAGTGGAAAAAGAAAGCAATTGAAGCTACTGCTATTGGAGGATCATCTTACAATAATTTTGACAAATTGATTAAGGAGGCTCTTCATAAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

481

Amino Acids

54.3

Weight (kDa)

5.51

Isoelectric Point (pI)

34.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	13 - 133	2.7e-09	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	67 - 440	9.4e-25	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	477
AccII	CGCG	1 cut(s)	1278
AciI	CCGC	2 cut(s)	118, 1137
AclWI	GGATC	4 cut(s)	159, 556, 569, 1399
AcsI	RAATTY	5 cut(s)	520, 707, 944, 1037, 1144
AcuI	CTGAAG	2 cut(s)	222, 363
AcvI	CACGTG	1 cut(s)	793
AfaI	GTAC	2 cut(s)	467, 1234
AfeI	AGCGCT	1 cut(s)	1293
AfiI	CCNNNNNNNGG	3 cut(s)	62, 310, 1115
AflIII	ACRYGT	2 cut(s)	293, 696
AgsI	TTSAA	7 cut(s)	145, 310, 673, 800, 940, 1157, 1373
AhdI	GACNNNNNGTC	1 cut(s)	1218
AjnI	CCWGG	4 cut(s)	107, 284, 565, 645
AluBI	AGCT	7 cut(s)	97, 269, 316, 328, 603, 825, 1376
AluI	AGCT	7 cut(s)	97, 269, 316, 328, 603, 825, 1376
Alw26I	GTCTC	2 cut(s)	206, 383
AlwI	GGATC	4 cut(s)	159, 556, 569, 1399
Aor51HI	AGCGCT	1 cut(s)	1293
AoxI	GGCC	3 cut(s)	64, 301, 995
ApoI	RAATTY	5 cut(s)	520, 707, 944, 1037, 1144
ArsI	GACNNNNNNTTYG	4 cut(s)	191, 223, 620, 652
AspLEI	GCGC	1 cut(s)	1294
AspS9I	GGNCC	2 cut(s)	302, 767
AsuHPI	GGTGA	2 cut(s)	331, 1270
AvaII	GGWCC	1 cut(s)	767
AxyI	CCTNAGG	1 cut(s)	423
BamHI	GGATCC	1 cut(s)	561
BbrPI	CACGTG	1 cut(s)	793
BbvCI	CCTCAGC	1 cut(s)	821
BccI	CCATC	3 cut(s)	368, 527, 1117
BcgI	CGANNNNNNTGC	2 cut(s)	1092, 1126
BciT130I	CCWGG	4 cut(s)	109, 286, 567, 647
BcoDI	GTCTC	2 cut(s)	206, 383
BfaI	CTAG	3 cut(s)	413, 600, 1100
BfoI	RGCGCY	1 cut(s)	1295
BfuAI	ACCTGC	1 cut(s)	477
BlpI	GCTNAGC	1 cut(s)	1203
Bme1390I	CCNGG	4 cut(s)	109, 286, 567, 647
Bme18I	GGWCC	1 cut(s)	767
BmeRI	GACNNNNNGTC	1 cut(s)	1218
BmgT120I	GGNCC	2 cut(s)	302, 767
BmiI	GGNNCC	4 cut(s)	22, 175, 563, 652
BmrFI	CCNGG	4 cut(s)	109, 286, 567, 647
BmsI	GCATC	2 cut(s)	72, 238
BpmI	CTGGAG	1 cut(s)	91
Bpu10I	CCTNAGC	4 cut(s)	405, 821, 826, 1347
Bpu1102I	GCTNAGC	1 cut(s)	1203
BpuEI	CTTGAG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	793
BsaI	GGTCTC	2 cut(s)	206, 383
BsaJI	CCNNGG	3 cut(s)	108, 565, 646
BsaWI	WCCGGW	2 cut(s)	196, 220
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 310, 1115
Bse118I	RCCGGY	1 cut(s)	150
Bse21I	CCTNAGG	1 cut(s)	423
Bse3DI	GCAATG	1 cut(s)	1132
BseBI	CCWGG	4 cut(s)	109, 286, 567, 647
BseDI	CCNNGG	3 cut(s)	108, 565, 646
BseGI	GGATG	3 cut(s)	594, 687, 1105
BseLI	CCNNNNNNNGG	3 cut(s)	62, 310, 1115
BseMI	GCAATG	1 cut(s)	1132
BseMII	CTCAG	5 cut(s)	129, 414, 835, 840, 1194
BseRI	GAGGAG	1 cut(s)	1061
BseYI	CCCAGC	2 cut(s)	55, 265
BsgI	GTGCAG	1 cut(s)	86
Bsh1236I	CGCG	1 cut(s)	1278
Bsh1285I	CGRYCG	1 cut(s)	1116
BshFI	GGCC	3 cut(s)	66, 303, 997
BsiEI	CGRYCG	1 cut(s)	1116
BsiSI	CCGG	3 cut(s)	151, 197, 221
BslFI	GGGAC	4 cut(s)	32, 204, 248, 802
BslI	CCNNNNNNNGG	3 cut(s)	62, 310, 1115
BsmAI	GTCTC	2 cut(s)	206, 383
BsmFI	GGGAC	4 cut(s)	32, 204, 248, 802
BsnI	GGCC	3 cut(s)	66, 303, 997
Bso31I	GGTCTC	2 cut(s)	206, 383
Bsp143I	GATC	3 cut(s)	164, 561, 1391
Bsp1720I	GCTNAGC	1 cut(s)	1203
BspACI	CCGC	2 cut(s)	118, 1137
BspANI	GGCC	3 cut(s)	66, 303, 997
BspCNI	CTCAG	5 cut(s)	130, 415, 834, 839, 1195
BspFNI	CGCG	1 cut(s)	1278
BspLI	GGNNCC	4 cut(s)	22, 175, 563, 652
BspMI	ACCTGC	1 cut(s)	477
BspPI	GGATC	4 cut(s)	159, 556, 569, 1399
BspQI	GCTCTTC	1 cut(s)	1437
BspTNI	GGTCTC	2 cut(s)	206, 383
BsrDI	GCAATG	1 cut(s)	1132
BsrFI	RCCGGY	1 cut(s)	150
BssAI	RCCGGY	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	108, 565, 646
BssMI	GATC	3 cut(s)	164, 561, 1391
Bst2UI	CCWGG	4 cut(s)	109, 286, 567, 647
Bst4CI	ACNGT	2 cut(s)	15, 668
Bst6I	CTCTTC	1 cut(s)	1437
BstBAI	YACGTR	1 cut(s)	793
BstC8I	GCNNGC	3 cut(s)	36, 960, 1190
BstDEI	CTNAG	9 cut(s)	138, 324, 405, 423, 736, 821, 826, 1203, 1347
BstF5I	GGATG	3 cut(s)	594, 687, 1105
BstFNI	CGCG	1 cut(s)	1278
BstH2I	RGCGCY	1 cut(s)	1295
BstHHI	GCGC	1 cut(s)	1294
BstKTI	GATC	3 cut(s)	167, 564, 1394
BstMAI	GTCTC	2 cut(s)	206, 383
BstMBI	GATC	3 cut(s)	164, 561, 1391
BstMCI	CGRYCG	1 cut(s)	1116
BstMWI	GCNNNNNNNGC	2 cut(s)	787, 1373
BstNI	CCWGG	4 cut(s)	109, 286, 567, 647
BstNSI	RCATGY	2 cut(s)	38, 297
BstSCI	CCNGG	4 cut(s)	107, 284, 565, 645
BstUI	CGCG	1 cut(s)	1278
BstX2I	RGATCY	1 cut(s)	561
BstXI	CCANNNNNNTGG	1 cut(s)	558
BstYI	RGATCY	1 cut(s)	561
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	66, 303, 997
BtsCI	GGATG	3 cut(s)	594, 687, 1105
BtsIMutI	CAGTG	2 cut(s)	135, 615
BveI	ACCTGC	1 cut(s)	477
Cac8I	GCNNGC	3 cut(s)	36, 960, 1190
CfoI	GCGC	1 cut(s)	1294
Cfr10I	RCCGGY	1 cut(s)	150
Cfr13I	GGNCC	2 cut(s)	302, 767
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	2 cut(s)	466, 1233
CspCI	CAANNNNNGTGG	2 cut(s)	759, 794
CviQI	GTAC	2 cut(s)	466, 1233
DdeI	CTNAG	9 cut(s)	138, 324, 405, 423, 736, 821, 826, 1203, 1347
DpnI	GATC	3 cut(s)	166, 563, 1393
DpnII	GATC	3 cut(s)	164, 561, 1391
DraI	TTTAAA	1 cut(s)	511
DriI	GACNNNNNGTC	1 cut(s)	1218
Eam1104I	CTCTTC	1 cut(s)	1437
Eam1105I	GACNNNNNGTC	1 cut(s)	1218
EarI	CTCTTC	1 cut(s)	1437
Eco147I	AGGCCT	1 cut(s)	997
Eco31I	GGTCTC	2 cut(s)	206, 383
Eco47I	GGWCC	1 cut(s)	767
Eco47III	AGCGCT	1 cut(s)	1293
Eco57I	CTGAAG	2 cut(s)	222, 363
Eco72I	CACGTG	1 cut(s)	793
Eco81I	CCTNAGG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	1144
EcoRII	CCWGG	4 cut(s)	107, 284, 565, 645
FaqI	GGGAC	4 cut(s)	32, 204, 248, 802
FokI	GGATG	3 cut(s)	581, 674, 1092
FspBI	CTAG	3 cut(s)	413, 600, 1100
GlaI	GCGC	1 cut(s)	1293
GsaI	CCCAGC	2 cut(s)	59, 269
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	1295
HaeIII	GGCC	3 cut(s)	66, 303, 997
HapII	CCGG	3 cut(s)	151, 197, 221
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	1294
Hin6I	GCGC	1 cut(s)	1292
HinP1I	GCGC	1 cut(s)	1292
HincII	GTYRAC	2 cut(s)	73, 133
HindII	GTYRAC	2 cut(s)	73, 133
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	8 cut(s)	114, 179, 278, 418, 612, 884, 1016, 1157
HpaI	GTTAAC	1 cut(s)	73
HpaII	CCGG	3 cut(s)	151, 197, 221
HphI	GGTGA	2 cut(s)	331, 1270
Hpy166II	GTNNAC	7 cut(s)	73, 133, 539, 770, 1085, 1233, 1261
Hpy188I	TCNGA	8 cut(s)	164, 178, 241, 343, 373, 611, 1033, 1168
Hpy188III	TCNNGA	3 cut(s)	168, 211, 422
Hpy8I	GTNNAC	7 cut(s)	73, 133, 539, 770, 1085, 1233, 1261
Hpy99I	CGWCG	1 cut(s)	1283
HpyAV	CCTTC	2 cut(s)	246, 1307
HpyCH4III	ACNGT	2 cut(s)	15, 668
HpyCH4IV	ACGT	2 cut(s)	698, 792
HpyF10VI	GCNNNNNNNGC	2 cut(s)	787, 1373
HpyF3I	CTNAG	9 cut(s)	138, 324, 405, 423, 736, 821, 826, 1203, 1347
HpySE526I	ACGT	2 cut(s)	698, 792
HspAI	GCGC	1 cut(s)	1292
KspAI	GTTAAC	1 cut(s)	73
Kzo9I	GATC	3 cut(s)	164, 561, 1391
LguI	GCTCTTC	1 cut(s)	1437
LmnI	GCTCC	4 cut(s)	20, 313, 909, 1090
LweI	GCATC	2 cut(s)	72, 238
MaeI	CTAG	3 cut(s)	413, 600, 1100
MaeII	ACGT	2 cut(s)	698, 792
MaeIII	GTNAC	5 cut(s)	275, 319, 613, 913, 1064
MalI	GATC	3 cut(s)	166, 563, 1393
MboI	GATC	3 cut(s)	164, 561, 1391
MboII	GAAGA	6 cut(s)	586, 740, 854, 1046, 1342, 1424
MfeI	CAATTG	3 cut(s)	552, 762, 1368
MflI	RGATCY	1 cut(s)	561
MlyI	GAGTC	4 cut(s)	173, 272, 621, 878
MmeI	TCCRAC	2 cut(s)	201, 1121
MseI	TTAA	8 cut(s)	72, 158, 510, 1053, 1272, 1287, 1299, 1422
MspI	CCGG	3 cut(s)	151, 197, 221
MspR9I	CCNGG	4 cut(s)	109, 286, 567, 647
MunI	CAATTG	3 cut(s)	552, 762, 1368
MvaI	CCWGG	4 cut(s)	109, 286, 567, 647
MvnI	CGCG	1 cut(s)	1278
MwoI	GCNNNNNNNGC	2 cut(s)	787, 1373
NdeII	GATC	3 cut(s)	164, 561, 1391
NlaIV	GGNNCC	4 cut(s)	22, 175, 563, 652
NmuCI	GTSAC	3 cut(s)	275, 319, 613
NspI	RCATGY	2 cut(s)	38, 297
PaeI	GCATGC	1 cut(s)	38
PceI	AGGCCT	1 cut(s)	997
PciI	ACATGT	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	1437
PfeI	GAWTC	4 cut(s)	114, 418, 1016, 1157
PflFI	GACNNNGTC	1 cut(s)	182
PleI	GAGTC	4 cut(s)	173, 272, 620, 878
PmaCI	CACGTG	1 cut(s)	793
PmlI	CACGTG	1 cut(s)	793
PpsI	GAGTC	4 cut(s)	173, 272, 620, 878
Ppu21I	YACGTR	1 cut(s)	793
PscI	ACATGT	1 cut(s)	293
Psp6I	CCWGG	4 cut(s)	107, 284, 565, 645
PspCI	CACGTG	1 cut(s)	793
PspFI	CCCAGC	2 cut(s)	55, 265
PspGI	CCWGG	4 cut(s)	107, 284, 565, 645
PspN4I	GGNNCC	4 cut(s)	22, 175, 563, 652
PspPI	GGNCC	2 cut(s)	302, 767
PsuI	RGATCY	1 cut(s)	561
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	467, 1234
RsaNI	GTAC	2 cut(s)	466, 1233
SapI	GCTCTTC	1 cut(s)	1437
SaqAI	TTAA	8 cut(s)	72, 158, 510, 1053, 1272, 1287, 1299, 1422
Sau3AI	GATC	3 cut(s)	164, 561, 1391
Sau96I	GGNCC	2 cut(s)	302, 767
SchI	GAGTC	4 cut(s)	173, 272, 621, 878
ScrFI	CCNGG	4 cut(s)	109, 286, 567, 647
SfaNI	GCATC	2 cut(s)	72, 238
SgrAI	CRCCGGYG	1 cut(s)	150
SinI	GGWCC	1 cut(s)	767
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
SphI	GCATGC	1 cut(s)	38
SseBI	AGGCCT	1 cut(s)	997
SsiI	CCGC	2 cut(s)	118, 1137
SspMI	CTAG	3 cut(s)	413, 600, 1100
StuI	AGGCCT	1 cut(s)	997
StyD4I	CCNGG	4 cut(s)	107, 284, 565, 645
TaaI	ACNGT	2 cut(s)	15, 668
TaiI	ACGT	2 cut(s)	701, 795
TaqI	TCGA	6 cut(s)	8, 210, 543, 639, 858, 1044
TaqII	GACCGA	1 cut(s)	1102
TatI	WGTACW	1 cut(s)	1232
TfiI	GAWTC	4 cut(s)	114, 418, 1016, 1157
Tru1I	TTAA	8 cut(s)	72, 158, 510, 1053, 1272, 1287, 1299, 1422
Tru9I	TTAA	8 cut(s)	72, 158, 510, 1053, 1272, 1287, 1299, 1422
TscAI	CASTG	2 cut(s)	142, 622
TseFI	GTSAC	3 cut(s)	275, 319, 613
Tsp45I	GTSAC	3 cut(s)	275, 319, 613
TspDTI	ATGAA	5 cut(s)	448, 514, 531, 587, 1424
TspRI	CASTG	2 cut(s)	142, 622
Tth111I	GACNNNGTC	1 cut(s)	182
VpaK11BI	GGWCC	1 cut(s)	767
XapI	RAATTY	5 cut(s)	520, 707, 944, 1037, 1144
XceI	RCATGY	2 cut(s)	38, 297
XspI	CTAG	3 cut(s)	413, 600, 1100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.