Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000867

Physical Location & Seq

Genomic Coordinates Reverse (-)

67448612 .. 67452142

Gene Structure 3531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00130960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCTTACCTGCACTATTGTGAACTAGCCAAACGAGGAATTGTTCCTTTTCAAGATGAATTCATGCATGACAGTACACTAGATACACAAATTGACTGGATCCCAGGCATGAAAAATGTCAGGCTCAAGGACATTCCTAGTTTCATCAGAGTTACTGATGTCAATGATATAATGTTCGATTTCATGGGATCCGAAGCACAAAACTGTTTGACATCTTTAGCAATCATCTTCAACACATTCGATGAATTGGAACACGAAGTGTTAGAATCAATATCAGCCAAGTTTCCCAACTTTTACACGGTTGGTCCACTTACTTTGCTTGGAAAGCAAGTTCCTGATGAGAGCAATTTGATCAAGTCACTTGGCTCAAGCTTATGGAAAGAAGACACAAAATGTCTTGAGTGGCTTGATGAACAGAAACCCAACTCAGTTGTTTATCATAACATCAATGACAGACCAACATTAGAATTTGCTTGGGGGCTGGCAAATAGCAAGCACCCCTTTTTGTGGATACTGAAGCATGATGTGGTAAAGGGTGATTTGGTAGTATTACCTGATGATTTTTTCGAAGAGATCAAGGATAGGGGTTGCATTGCAAGTTGGTGTCCCCAGGACCAAGTGCTAGCACATCCTTCAGTTGCGGTTTTCCCAACACATTGCGGTTGGAATTCTACTATTGAAAGTATAGCTGAATGTGTGCCTGTAATTTGTTGGCCTTTCTTTGCCGAACAGCAAACAAATTGCCATTTTGCGTGTACTGATTGGGAAATTGGAATAGAGGTGAACAATGATGTTAAGCGCGACGAGATTGAAAAGCTCATTAAGGAAATGCTGGAAGGTGAAAAAGGCTTGAAAATGAGGGAAAAGGCAGAGCAATGGAAGCAAAAAGCTGTAGAAGCTACTGAGATAGGAGGGTCATCTCATATTAATTTTGGTAGATTGATCAAGGAGAGGCTCAAATATGGTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0008194 GO:0015020 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046527 GO:0050403 GO:0050502 GO:0080043 GO:0080044

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

323

Amino Acids

37.06

Weight (kDa)

4.91

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	147 - 281	4e-18	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000867)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35790 FvH4_6g52580 FvH4_7g03840
malus_domestica	MD00G1052900.v1.1 MD01G1029200.v1.1 MD01G1033000.v1.1 MD01G1033200.v1.1 MD11G1245400.v1.1 MD11G1245700.v1.1 MD11G1246000.v1.1 MD13G1080500.v1.1
prunus_persica	Prupe.1G266300_v2.0.a1 Prupe.6G189800_v2.0.a1 Prupe.6G189900_v2.0.a1 Prupe.6G190100_v2.0.a1 Prupe.6G190300_v2.0.a1 Prupe.6G190600_v2.0.a1
pyrus_communis	pycom01g05760 pycom01g06000 pycom11g21770
rosa_chinensis	RchiOBHm_Chr1g0327231 RchiOBHm_Chr2g0112881 RchiOBHm_Chr2g0112891 RchiOBHm_Chr2g0112921 RchiOBHm_Chr2g0112941 RchiOBHm_Chr2g0113001 RchiOBHm_Chr2g0113011 RchiOBHm_Chr4g0445311 RchiOBHm_Chr6g0267321
rosa_laevigata	RLG00000005749 RLG00000018018 RLG00000018020 RLG00000018023 RLG00000018027 RLG00000018029 RLG00000018030 RLG00000030033
rosa_multiflora	Rmu_sc0000050.1_g000021 Rmu_sc0000795.1_g000117 Rmu_sc0002351.1_g000078 Rmu_sc0002351.1_g000084 Rmu_sc0002351.1_g000093 Rmu_sc0002351.1_g000104 Rmu_sc0002418.1_g000002 Rmu_sc0014256.1_g000002 Rmu_sc0014256.1_g000005 Rmu_sc0024545.1_g000001
rosa_roxburghii	Rroxscaffold_2G00130960 Rroxscaffold_2G00131000 Rroxscaffold_2G00131090 Rroxscaffold_5G00385830
rosa_rugosa	Rorug01G0064700 Rorug02G0183200 Rorug02G0183200 Rorug04G0360300
rosa_samantha	Rh1AG081700 Rh2BG251400 Rh2BG251900 Rh4CG448400
rosa_wichuraiana	Rw0G006830 Rw1G006460 Rw1G015720 Rw2G018630 Rw2G018640 Rw2G018660 Rw2G018690 Rw4G036170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccII	CGCG	1 cut(s)	801
AciI	CCGC	2 cut(s)	641, 660
AclWI	GGATC	4 cut(s)	94, 107, 183, 196
AcsI	RAATTY	3 cut(s)	59, 467, 667
AcuI	CTGAAG	2 cut(s)	536, 618
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	2 cut(s)	76, 757
AfiI	CCNNNNNNNGG	1 cut(s)	507
AgsI	TTSAA	5 cut(s)	53, 232, 680, 812, 853
AjnI	CCWGG	2 cut(s)	103, 609
AleI	CACNNNNGTG	1 cut(s)	18
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	372, 689, 817, 890, 899
AluI	AGCT	5 cut(s)	372, 689, 817, 890, 899
AlwI	GGATC	4 cut(s)	94, 107, 183, 196
AoxI	GGCC	1 cut(s)	713
ApoI	RAATTY	3 cut(s)	59, 467, 667
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	305, 613
AsuHPI	GGTGA	3 cut(s)	548, 793, 851
AsuII	TTCGAA	1 cut(s)	567
AsuNHI	GCTAGC	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	305, 613
BamHI	GGATCC	2 cut(s)	99, 188
BbsI	GAAGAC	1 cut(s)	390
BciT130I	CCWGG	2 cut(s)	105, 611
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	2 cut(s)	351, 942
BfaI	CTAG	4 cut(s)	26, 80, 138, 623
BfmI	CTRYAG	1 cut(s)	891
BfuAI	ACCTGC	1 cut(s)	18
BfuI	GTATCC	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	105, 611
Bme18I	GGWCC	2 cut(s)	305, 613
BmgT120I	GGNCC	2 cut(s)	305, 613
BmiI	GGNNCC	2 cut(s)	101, 190
BmrFI	CCNGG	2 cut(s)	105, 611
BmtI	GCTAGC	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	567
BpuEI	CTTGAG	3 cut(s)	110, 352, 419
BsaJI	CCNNGG	2 cut(s)	103, 609
Bsc4I	CCNNNNNNNGG	1 cut(s)	507
Bse1I	ACTGG	1 cut(s)	101
Bse3DI	GCAATG	3 cut(s)	591, 655, 881
BseBI	CCWGG	2 cut(s)	105, 611
BseDI	CCNNGG	2 cut(s)	103, 609
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	1 cut(s)	507
BseMI	GCAATG	3 cut(s)	591, 655, 881
BseMII	CTCAG	2 cut(s)	441, 894
BseNI	ACTGG	1 cut(s)	101
Bsh1236I	CGCG	1 cut(s)	801
BshFI	GGCC	1 cut(s)	715
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	1 cut(s)	715
Bsp119I	TTCGAA	1 cut(s)	567
Bsp143I	GATC	5 cut(s)	99, 188, 351, 573, 942
BspACI	CCGC	2 cut(s)	641, 660
BspANI	GGCC	1 cut(s)	715
BspCNI	CTCAG	2 cut(s)	440, 895
BspFNI	CGCG	1 cut(s)	801
BspLI	GGNNCC	2 cut(s)	101, 190
BspMI	ACCTGC	1 cut(s)	18
BspOI	GCTAGC	1 cut(s)	626
BspPI	GGATC	4 cut(s)	94, 107, 183, 196
BspT104I	TTCGAA	1 cut(s)	567
BsrDI	GCAATG	3 cut(s)	591, 655, 881
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	103, 609
BssMI	GATC	5 cut(s)	99, 188, 351, 573, 942
Bst2UI	CCWGG	2 cut(s)	105, 611
Bst4CI	ACNGT	3 cut(s)	74, 206, 301
Bst6I	CTCTTC	1 cut(s)	564
BstBI	TTCGAA	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	483, 494, 624
BstDEI	CTNAG	2 cut(s)	427, 903
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	801
BstHHI	GCGC	1 cut(s)	801
BstKTI	GATC	5 cut(s)	102, 191, 354, 576, 945
BstMBI	GATC	5 cut(s)	99, 188, 351, 573, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 880, 896
BstNI	CCWGG	2 cut(s)	105, 611
BstSCI	CCNGG	2 cut(s)	103, 609
BstSFI	CTRYAG	1 cut(s)	891
BstUI	CGCG	1 cut(s)	801
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	99, 188
BstYI	RGATCY	2 cut(s)	99, 188
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	1 cut(s)	715
BtsCI	GGATG	1 cut(s)	628
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	3 cut(s)	483, 494, 624
CfoI	GCGC	1 cut(s)	801
Cfr13I	GGNCC	2 cut(s)	305, 613
Csp6I	GTAC	2 cut(s)	75, 756
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	5 cut(s)	64, 68, 109, 184, 521
CviQI	GTAC	2 cut(s)	75, 756
DdeI	CTNAG	2 cut(s)	427, 903
DpnI	GATC	5 cut(s)	101, 190, 353, 575, 944
DpnII	GATC	5 cut(s)	99, 188, 351, 573, 942
DraIII	CACNNNGTG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco47I	GGWCC	2 cut(s)	305, 613
Eco57I	CTGAAG	2 cut(s)	536, 618
EcoRI	GAATTC	2 cut(s)	59, 667
EcoRII	CCWGG	2 cut(s)	103, 609
EcoT22I	ATGCAT	1 cut(s)	69
FaeI	CATG	5 cut(s)	67, 71, 112, 187, 524
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	5 cut(s)	63, 67, 108, 183, 520
FbaI	TGATCA	2 cut(s)	351, 942
FokI	GGATG	1 cut(s)	615
FspBI	CTAG	4 cut(s)	26, 80, 138, 623
GlaI	GCGC	1 cut(s)	800
HaeIII	GGCC	1 cut(s)	715
HhaI	GCGC	1 cut(s)	801
Hin1II	CATG	5 cut(s)	67, 71, 112, 187, 524
Hin6I	GCGC	1 cut(s)	799
HinP1I	GCGC	1 cut(s)	799
HindIII	AAGCTT	1 cut(s)	370
HinfI	GANTC	1 cut(s)	266
HphI	GGTGA	3 cut(s)	548, 793, 851
Hpy166II	GTNNAC	5 cut(s)	23, 77, 308, 756, 784
Hpy188I	TCNGA	2 cut(s)	149, 193
Hpy188III	TCNNGA	3 cut(s)	53, 335, 398
Hpy8I	GTNNAC	5 cut(s)	23, 77, 308, 756, 784
Hpy99I	CGWCG	1 cut(s)	806
HpyAV	CCTTC	2 cut(s)	642, 830
HpyCH4III	ACNGT	3 cut(s)	74, 206, 301
HpyCH4V	TGCA	4 cut(s)	13, 67, 591, 596
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 880, 896
HpyF3I	CTNAG	2 cut(s)	427, 903
Hsp92II	CATG	5 cut(s)	67, 71, 112, 187, 524
HspAI	GCGC	1 cut(s)	799
Ksp22I	TGATCA	2 cut(s)	351, 942
Kzo9I	GATC	5 cut(s)	99, 188, 351, 573, 942
MaeI	CTAG	4 cut(s)	26, 80, 138, 623
MaeIII	GTNAC	2 cut(s)	151, 357
MalI	GATC	5 cut(s)	101, 190, 353, 575, 944
MboI	GATC	5 cut(s)	99, 188, 351, 573, 942
MboII	GAAGA	3 cut(s)	220, 395, 581
MflI	RGATCY	2 cut(s)	99, 188
MmeI	TCCRAC	1 cut(s)	644
MnlI	CCTC	5 cut(s)	29, 772, 852, 905, 945
Mph1103I	ATGCAT	1 cut(s)	69
MseI	TTAA	3 cut(s)	795, 822, 927
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	2 cut(s)	105, 611
MvaI	CCWGG	2 cut(s)	105, 611
MvnI	CGCG	1 cut(s)	801
MwoI	GCNNNNNNNGC	3 cut(s)	325, 880, 896
NdeII	GATC	5 cut(s)	99, 188, 351, 573, 942
NheI	GCTAGC	1 cut(s)	622
NlaIII	CATG	5 cut(s)	67, 71, 112, 187, 524
NlaIV	GGNNCC	2 cut(s)	101, 190
NmuCI	GTSAC	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	69
NspV	TTCGAA	1 cut(s)	567
OliI	CACNNNNGTG	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	266
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	2 cut(s)	103, 609
PspGI	CCWGG	2 cut(s)	103, 609
PspN4I	GGNNCC	2 cut(s)	101, 190
PspPI	GGNCC	2 cut(s)	305, 613
PsuI	RGATCY	2 cut(s)	99, 188
RsaI	GTAC	2 cut(s)	76, 757
RsaNI	GTAC	2 cut(s)	75, 756
RseI	CAYNNNNRTG	1 cut(s)	18
SaqAI	TTAA	3 cut(s)	795, 822, 927
Sau3AI	GATC	5 cut(s)	99, 188, 351, 573, 942
Sau96I	GGNCC	2 cut(s)	305, 613
ScrFI	CCNGG	2 cut(s)	105, 611
SetI	ASST	9 cut(s)	12, 374, 556, 691, 783, 819, 841, 892, 901
SfcI	CTRYAG	1 cut(s)	891
SfuI	TTCGAA	1 cut(s)	567
SinI	GGWCC	2 cut(s)	305, 613
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	3 cut(s)	125, 367, 398
SmoI	CTYRAG	3 cut(s)	125, 367, 398
SsiI	CCGC	2 cut(s)	641, 660
SspMI	CTAG	4 cut(s)	26, 80, 138, 623
StyD4I	CCNGG	2 cut(s)	103, 609
TaaI	ACNGT	3 cut(s)	74, 206, 301
TaqI	TCGA	3 cut(s)	177, 240, 567
TatI	WGTACW	2 cut(s)	74, 755
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	3 cut(s)	795, 822, 927
Tru9I	TTAA	3 cut(s)	795, 822, 927
TseFI	GTSAC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	7 cut(s)	52, 72, 125, 133, 172, 258, 426
VpaK11BI	GGWCC	2 cut(s)	305, 613
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	3 cut(s)	59, 467, 667
XspI	CTAG	4 cut(s)	26, 80, 138, 623
Zsp2I	ATGCAT	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.